DotHelix: Motifs' Collection Map Results

References:

• Leontovich A.M.,Brodsky L.I., Gorbalenya A.E. Construction of the full local similarity map for two biopolymers, 1993, Biosystems, 30,57-63.[Word97 doc]
• Brodsky L.I., Ivanov V.V., Kalaidzidis Ya.L., Leontovich A.M., Nikolaev V.K., Feranchuk S.I., Drachev V.A. GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60, 8, 923-928. [Word97 doc]

Name	Value
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	4
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	BLOSUM62

Sequences

>AL_DROME 


MGISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPSGASGAS
GGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAM
KIGLTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHL
GFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSF
QSLLANMTAVPRGPPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPP
PPQAPPQMPVGVQPAQLSPQQLVGIALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQ
APPPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQNGHGNDVVS

>AL_AG


YRFKIYNIARLANLDQPSRPMGISDEGSRLEDIGPHEARPPQGSPLERSASTGQLMGSSG
GDPNSPLSDPHSDDGGDDFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAM
KIGLTEARIQVWFQNRRAKWRKQEKVGPQGHPYNPYLASAGQVPSATVVAPSLPPNPFSH
LGFNLRKPFDAASLAAFRYPSLGGSHMLPSAYFNQFHRAPPPPLLPPGVGTFYTPSASFQ
TLLANISAAQRAPPAMPSKPPTSGVDYMPPGPPGIPPPPPPGSQVPTSPASPPISPTALP
PVVPVPQAALPAPPQPPPGSASPPQADRRSSSIAALRLKAREHELRLEMLRQNGHSDILS

BLOSUM62 AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 8 C 4 13 D 2 1 10 E 3 0 6 9 F 2 2 1 1 10 G 4 1 3 2 1 10 H 2 1 3 4 3 2 12 I 3 3 1 1 4 0 1 8 K 3 1 3 5 1 2 3 1 9 L 3 3 0 1 4 0 1 6 2 8 M 3 3 1 2 4 1 2 5 3 6 9 N 2 1 5 4 1 4 5 1 4 1 2 10 P 3 1 3 3 0 2 2 1 3 1 2 2 11 Q 3 1 4 6 1 2 4 1 5 2 4 4 3 9 R 3 1 2 4 1 2 4 1 6 2 3 4 2 5 9 S 5 3 4 4 2 4 3 2 4 2 3 5 3 4 3 8 T 4 3 3 3 2 2 2 3 3 3 3 4 3 3 3 5 9 V 4 3 1 2 3 1 1 7 2 5 5 1 2 2 1 2 4 8 W 1 2 0 1 5 2 2 1 1 2 3 0 0 2 1 1 2 1 15 Y 2 2 1 2 7 1 6 3 2 3 3 2 1 3 2 2 2 3 6 11

BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif   1-1,    Power   18.7  Homology percent  90.4  Length     94
                      NSP+SD +SD  .D**APKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG
>AL_DROME    (  64)   NSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG
>AL_AG       (  64)   NSPLSDPHSDDGGDDFAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIG

                      LTEARIQVWFQNRRAKWRKQEKVGPQ.HPYNPYL
>AL_DROME    ( 124)   LTEARIQVWFQNRRAKWRKQEKVGPQSHPYNPYL
>AL_AG       ( 124)   LTEARIQVWFQNRRAKWRKQEKVGPQGHPYNPYL


  
Motif   1-2,    Power   10.2  Homology percent  73.8  Length     42
                      PPP  A+ P  DRR+SSIAALRLKAREHEL*LE*LRQNGH.+
>AL_DROME    ( 363)   PPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQNGHGN
>AL_AG       ( 316)   PPPGSASPPQADRRSSSIAALRLKAREHELRLEMLRQNGHSD


  
Motif   1-3,    Power    8.5  Homology percent  71.0  Length     31
                      AA+LAAFRYP L..+ M*PS.YFNQF.RAPP
>AL_DROME    ( 193)   AANLAAFRYPHLSAAPMIPSGYFNQFQRAPP
>AL_AG       ( 191)   AASLAAFRYPSLGGSHMLPSAYFNQFHRAPP


  
Motif   1-4,    Power    8.5  Homology percent  80.0  Length     25
                      TVV. +LPPNPF+HLGF.LRKPFDA
>AL_DROME    ( 166)   TVVGAALPPNPFTHLGFQLRKPFDA
>AL_AG       ( 167)   TVVAPSLPPNPFSHLGFNLRKPFDA


  
Motif   1-5,    Power    7.3  Homology percent  55.9  Length     34
                      PP *LP G+. .Y+PS+SFQ+LLAN++A. R.PP
>AL_DROME    ( 222)   PPHMLPHGMAGMYSPSSSFQSLLANMTAVPRGPP
>AL_AG       ( 221)   PPPLLPPGVGTFYTPSASFQTLLANISAAQRAPP


  
Motif   1-6,    Power    4.0  Homology percent  24.2  Length     66
                      .S.+  + .SP     +  P   +P  +  APP PP .+. P .    S +   L* * .
>AL_DROME    ( 331)   ASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKAREH
>AL_AG       ( 282)   GSQVPTSPASPPISPTALPPVVPVPQAALPAPPQPPPGSASPPQADRRSSSIAALRLKAR

                      E +L.L
>AL_DROME    ( 391)   ELKLEL
>AL_AG       ( 342)   EHELRL