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DotHelix: Motifs' Collection Map Results

References:



Contents:


Parameters

Name Value
Motif's power threshold - DotHelix0
Motif's power threshold - noise upper bound6
Motif's length threshold7
Maximum number of motifs to plot1000
Maximum number of motifs to output50
Threshold of motif's homology percentage_0.01
Accurate DothelixON
Motif frequences recalcON
Normalize weight matrixON
Weight matricesBLOSUM62

Sequences

>Q9GRX3

MMTTTTSQHH QHHPIMPPAM RPAPVQESPV SRPRAVYSID QILGNQHQIK RMYTPSEVLI THPHHGHPHH IHHLHSSNSN GSNHLSHQQQ QQHSQQQHHS QQQQQQQQLQ VQAKREDSPT NTDGGLDVDN DDELSSSLNN GHDLSDMERP RKVRRSRTTF TTFQLHQLER AFEKTQYPDV FTREDLAMRL DLSEARVQVW FQNRRAKWRK REKFMNQDKA GYLLPEQGLP EFPLGIPLPP HGLPGHPGSM QSEFWPPHFA LHQHFNPAAA AAAGLLPQHL MAPHYKLPNF HTLLSQYMGL SNLNGIFGAG AAAAAAAASA GYPQNLSLHA GLSAMSQVSP PCSNSSPRES PKLVPHPTPP HATPPASGNG GGGLLTGGLI STAAQSPNSA AGASSNASTP VSVVTKGED

>Q9GRX3_AG

KREGSPVEVHDNGVDVDNDDELPIMGDIDPMDNDPNDMGRPRKIRRSRTTFTTYQLHQLE RAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNRRAKWRKREKAMGRDTSAFLHHEQGM PEFPLALPLTHNIPHPALPTEFWPPNFGLHPSLLPGAHGLLHPNVMPNYKIPNFHAILSQ YMGLNNLFG


Weight Matrix of BLOSUM62

BLOSUM62 AMINO ACIDS DISTANCE MATRIX
     A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y
A    8
C    4 13
D    2  1 10
E    3  0  6  9
F    2  2  1  1 10
G    4  1  3  2  1 10
H    2  1  3  4  3  2 12
I    3  3  1  1  4  0  1  8
K    3  1  3  5  1  2  3  1  9
L    3  3  0  1  4  0  1  6  2  8
M    3  3  1  2  4  1  2  5  3  6  9
N    2  1  5  4  1  4  5  1  4  1  2 10
P    3  1  3  3  0  2  2  1  3  1  2  2 11
Q    3  1  4  6  1  2  4  1  5  2  4  4  3  9
R    3  1  2  4  1  2  4  1  6  2  3  4  2  5  9
S    5  3  4  4  2  4  3  2  4  2  3  5  3  4  3  8
T    4  3  3  3  2  2  2  3  3  3  3  4  3  3  3  5  9
V    4  3  1  2  3  1  1  7  2  5  5  1  2  2  1  2  4  8
W    1  2  0  1  5  2  2  1  1  2  3  0  0  2  1  1  2  1 15
Y    2  2  1  2  7  1  6  3  2  3  3  2  1  3  2  2  2  3  6 11



BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix



BLOSUM62: List of Motifs

  

Motif 1-1, Power 16.3 Homology percent 81.9 Length 94

+DM RPRK*RRSRTTFTT*QLHQLERAFEKTQYPDVFTRE*LAMRLDLSEARVQVWFQNR >Q9GRX3 ( 145) SDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNR >Q9GRX3_AG ( 36) NDMGRPRKIRRSRTTFTTYQLHQLERAFEKTQYPDVFTREELAMRLDLSEARVQVWFQNR RAKWRKREK M++D ++*L EQG*PEFPL+*PL >Q9GRX3 ( 205) RAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPL >Q9GRX3_AG ( 96) RAKWRKREKAMGRDTSAFLHHEQGMPEFPLALPL

Motif 1-2, Power 7.7 Homology percent 76.2 Length 21

P+YK*PNFH+*LSQYMGL+NL >Q9GRX3 ( 283) PHYKLPNFHTLLSQYMGLSNL >Q9GRX3_AG ( 167) PNYKIPNFHAILSQYMGLNNL
TopParametersSequences Matrix of BLOSUM62Collection MapMotifs


Designed by Valeri Kazatchenko. Last updated: April 20, 2001.
Comments and bug-reports send to Vladimir Nikolaev
Created: Monday, Nov-10-2003 18:53:12.