Processing your request...

Estimated time before completing your request is approximately 5 minutes...



DotHelix: Motifs' Collection Map Results

References:



Contents:


Parameters

Name Value
Motif's power threshold - DotHelix0
Motif's power threshold - noise upper bound6
Motif's length threshold7
Maximum number of motifs to plot1000
Maximum number of motifs to output50
Threshold of motif's homology percentage_0.01
Accurate DothelixON
Motif frequences recalcON
Normalize weight matrixON
Weight matricesBLOSUM62

Sequences

>Q9W1U7

MLNYQQQLHSLPVGNPGNFYYGPTVSGEIYSSHQSHNLESEDKLEDREESGRNLDKIHRF SVDNIMEMKHDAYSKGKMAMELSSNFGPTGAGCGGADRPAPCSGNLPAGGGHHSRKPRRN RTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRRNERSVG SRTLLDTAPQLVPAPISNNMHKYANMPHPHPQPPPPPGAYALNFGPLELRSCQNYTNCYG GFGSSGASGSGVCSFFGATNYCVAANYAKNAYPPL

>Q9W1U7_AG

LEDTPTHKSDLSMRTKSCTLKKPRRNRTTFTTNQLTALEKIFEKTHYPDAFVREELANKV GLSEARVQVWFQNRRAKFRRNERSAQSSGGGGSASKGEDFFHPGAIPPSATSGGLAGFAG


Weight Matrix of BLOSUM62

BLOSUM62 AMINO ACIDS DISTANCE MATRIX
     A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y
A    8
C    4 13
D    2  1 10
E    3  0  6  9
F    2  2  1  1 10
G    4  1  3  2  1 10
H    2  1  3  4  3  2 12
I    3  3  1  1  4  0  1  8
K    3  1  3  5  1  2  3  1  9
L    3  3  0  1  4  0  1  6  2  8
M    3  3  1  2  4  1  2  5  3  6  9
N    2  1  5  4  1  4  5  1  4  1  2 10
P    3  1  3  3  0  2  2  1  3  1  2  2 11
Q    3  1  4  6  1  2  4  1  5  2  4  4  3  9
R    3  1  2  4  1  2  4  1  6  2  3  4  2  5  9
S    5  3  4  4  2  4  3  2  4  2  3  5  3  4  3  8
T    4  3  3  3  2  2  2  3  3  3  3  4  3  3  3  5  9
V    4  3  1  2  3  1  1  7  2  5  5  1  2  2  1  2  4  8
W    1  2  0  1  5  2  2  1  1  2  3  0  0  2  1  1  2  1 15
Y    2  2  1  2  7  1  6  3  2  3  3  2  1  3  2  2  2  3  6 11



BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix



BLOSUM62: List of Motifs

  

Motif 1-1, Power 13.5 Homology percent 86.2 Length 65

*KPRRNRTTF++ QLTALEK*FE*THYPDAFVREELA+KV LSEARVQVWFQNRRAKFRR >Q9W1U7 ( 115) RKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSEARVQVWFQNRRAKFRR >Q9W1U7_AG ( 21) KKPRRNRTTFTTNQLTALEKIFEKTHYPDAFVREELANKVGLSEARVQVWFQNRRAKFRR NERS+ >Q9W1U7 ( 175) NERSV >Q9W1U7_AG ( 81) NERSA
TopParametersSequences Matrix of BLOSUM62Collection MapMotifs


Designed by Valeri Kazatchenko. Last updated: April 20, 2001.
Comments and bug-reports send to Vladimir Nikolaev
Created: Thursday, Oct-30-2003 00:08:43.