TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: gt_genome.fasta
           1 sequences; 729,146 total letters



Query= RESA_BACSU P35160 Thiol-disulfide oxidoreductase ResA

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, com...  48.1    9e-08


> CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, complete 
genome.
Length=729146

 Score = 48.1 bits (113),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 32/104 (31%), Positives = 51/104 (50%), Gaps = 4/104 (3%)
 Frame = +3

Query  36      ISEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ  94
               I+ G  AP+F L  +NGK + LSD +G+ V L F+     P C  E     ++Y+ F   
Sbjct  544245  IAIGQPAPDFTLPASNGKMVSLSDFRGQYVVLYFYPKDMTPGCTTEACDFRDRYEQFT--  544418

Query  95      GVEIVAVNVGESKIAVH-NFMKSYGVNFPVVLDTDRQVLDAYDV  137
               G+  V + V    +  H  F++ Y + F ++ D    V + Y V
Sbjct  544419  GLNAVILGVSTDPVKRHETFIEKYQLPFLLLSDEQHHVAELYGV  544550



Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 26970780


  Database: gt_genome.fasta
    Posted date:  Oct 30, 2012  7:44 PM
  Number of letters in database: 729,146
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40