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Parameters
| Name | Value |
| User e-mail address | sherlock1991@rambler.ru |
| Use homological fragments only | Yes |
| Scale | Random |
| Algorithm | Both Cluster and Topological |
| Start position | 1 |
| End position | 10000 |
| Gap penalty (in SD units) | 1 |
| Throw off columns with N | |
| Output Tree Type | PHYLIP |
| Picture width | 640 |
| Picture height | 480 |
| Max/min factor (cluster) | 8 |
| Max/min factor (topological) | 8 |
| Bootstrap Enable | No |
Alignment
BRAJA MATITAAMVKDLRESTGAGMMDCKAALTENDGNMEAAQDWLRKKGLSKAA BURCA MAAITASMVAELRAKTDAPMMECKKALTEADGDLAKAEELLRVKLGNKAS RALPJ MAAITASMVAELRAKTDAPMMECKKALTEAEGNLEKAEEILRVKLGNKAG VIBCH -MAVTAALVKELRERTGAGMMECKKALVETNGDIELAIENMRKSGAAKAA VIBFM MATVTAALVKELRERTGAGMMECKKALVEANADIELAIENMRKSGAAKAA ECOLI MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAA PROMH MSGITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAA BRAJA KKSGRVAAEGLIGALT--KGTKGVVVEVNSETDFVARNGQFQGLVKMIAQ BURCA KAASRVTAEGVVASFV--GGNAGALVELNCETDFVAKNDDFLAFSKTVAE RALPJ KASSRVTAEGVVAAFV--EGTTGALVEVNCETDFVSKNDDFLAFTNEVAK VIBCH KKAGNIAAEGTIMIKE--GEGIAALVEVNCQTDFVAKDSNFVAFANQVTD VIBFM KKAGNVAAEGAIIIKE--ENGVAALLEVNCQTDFVAKDANFTAFAAEVAA ECOLI KKAGNVAADGVIKTKI--DGNYGIILEVNCQTDFVAKDAGFQAFADKVLD PROMH KKAGRVAAEGIILAEVAADGKFGALVELNCETDFVAKDAGFIAFGKDVMA BRAJA VAFDVG-ADVEKIKAAKVGDVTIETAINDAIATIGENMTLRRAASLEVSQ BURCA LVATQNPADVAALSALPLEGSTVDAVRLALIGKIGENVSIRRFVRFETAN RALPJ LIAQKNPADVAALSALSIGDETVEAVRTRLIGKIGENMTIRRFQRFE-GT VIBCH AALASK-ASVEELQA------QFEEARVALVAKIGENINIRRVQYVE-GE VIBFM AAVASQ-ATVEELQA------QFEETRVALVAKIGENINIRRVQYVA-GS ECOLI AAVAGKITDVEVLKA------QFEEERVALVAKIGENINIRRVAALE-GD PROMH AVLADKTDDIEALKA------KFEDARTALVAKIGENINIRRVAILE-GE BRAJA GVVSHYVHGAVIDGAGKMGVIVALESPGKADELAALGRQIAMHVAAANPL BURCA KIAT-YLHGA------RIGVIVEYTGAEEQ-----VGKDVAMHIAAMKPV RALPJ QLTS-YLHGT------RIGVMVAFEG-NEV-----AAKDAAMQAAAMKPV VIBCH ALAT-YRHGD------RIGVVVAGSA-DVE-----TLKHVAMHVAASRPE VIBFM ALAS-YRHGE------KIGVVVAGEG-DAE-----TLKHIAMHVAASKPE ECOLI VLGS-YQHGA------RIGVLVAAKGADEE-----LVKHIAMHVAASKPE PROMH ELGT-YLHGA------RIGVLVAAKGANEE-----LIKHIAMHVAASKPE BRAJA ALDPSGLDPAVVKREKDVLADKYRQQGKPENVIEKIVESGLKTYYKEVCL BURCA ALSSADVPAELIDTERRVAEQKAAESGKPAEIVAKMVDGSVQKYLKEVSL RALPJ SLSADDVPAELVAKERSVAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSL VIBCH FLTPDDVPAEVVAKEREVQVGIAMNEGKSKEIAEKMVEGRMKKFTGEVSL VIBFM YVNPSDVPADVVEKEKAVQVEIAMNEGKPQEIAEKMVIGRMKKFTGEVSL ECOLI FIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSL PROMH YVRPEDVPADVVEHEHQIQMDIAMQSGKPREIAEKMVTGRMNKFTGEISL BRAJA LEQAFIHDTGKSVAQAVKEAEGKVGGAVKIAGFVRYALGEGIEKQES-DF BURCA LNQTFVKNDKQTIEQMLKAANATV------QKFALFVVGEGIEKRQD-DF RALPJ LNQPFVKNDKQTVEQMLKAANTTV------KAFTLYVVGEGIEKKQD-DF VIBCH TGQPFVMEPKKTVGEILAEKGATV------SAFIRLEVGEGIEKQEGLSF VIBFM TGQAFIMEPKKTVAEILKEKGASV------SNFVRLEVGEGIEKAAEMSF ECOLI TGQPFVMEPSKTVGQLLKEHNAEV------TGFIRFEVGEGIEKVET-DF PROMH TGQHFVMDPSKTVGDLLKENNAEI------INFVRFEVGEGIEKVEA-DF BRAJA AAEVA---AASGKK- BURCA AAEVAAQVAAAKQQ- RALPJ AAEVAAQVAAAKQQA VIBCH AEEVA---LAQKG-- VIBFM ADEVA---AVQKG-- ECOLI AAEVA---AMSKQS- PROMH AAEVA---AMSK---
PHYLOGENETIC TREE
0.585935 _____________________________________________________________________ BRAJA |____________________________________________________________________ BURCA | |____________________________ RALPJ |______________________________________________________________ VIBCH | |________________________ VIBFM |_____________________________________ ECOLI |___________________________ PROMH * The phylogenetic tree in Phylip format (BRAJA:0.585935,((BURCA:0.234467,RALPJ:0.234467):0.292441,((VIBCH:0.203144,VIBFM:0.203144):0.108404,(ECOLI:0.230516,PROMH:0.230516):0.081031):0.215361):0.059026); CLUSTER ALGORITHM
____________________________________ BURCA | | |________________________________ RALPJ | |_____________________ VIBCH | | |___________________________ VIBFM | |____ PROMH | |________________________ ECOLI |___________________ BRAJA * The phylogenetic tree in Phylip format (((BURCA:0.001000,RALPJ:0.269122):0.140957,((VIBCH:0.001000,VIBFM:0.231037):0.070957,(PROMH:0.012720,ECOLI:0.209821):0.023761):0.112944):0.163872,BRAJA:0.163872); TOPOLOGICAL ALGORITHM
Distance Matrix
1 2 3 4 5 6 7 1 BRAJA 0.000 0.588 0.573 0.615 0.605 0.560 0.585 2 BURCA 0.588 0.000 0.234 0.543 0.548 0.504 0.504 3 RALPJ 0.573 0.234 0.000 0.535 0.544 0.514 0.522 4 VIBCH 0.615 0.543 0.535 0.000 0.203 0.299 0.329 5 VIBFM 0.605 0.548 0.544 0.203 0.000 0.301 0.317 6 ECOLI 0.560 0.504 0.514 0.299 0.301 0.000 0.231 7 PROMH 0.585 0.504 0.522 0.329 0.317 0.231 0.000
Graphical Phylogenetic Tree
| Parameters | Alignment | Textual Phylogenetic Tree | Distance Matrix | Graphical Phylogenetic Tree |