TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= DPS_ECOLI Fe-binding and storage protein
         (167 letters)

Database: xc 
           460 sequences; 5,103,728 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE012409 AE008922 Xanthomonas campestris pv. campestris str. ATC...    58   6e-10

>AE012409 AE008922 Xanthomonas campestris pv. campestris str. ATCC
            33913,  section 317 of 460 of the complete genome.
          Length = 9982

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
 Frame = +2

Query: 21   VSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTM 80
            + D+++K   + L R +     L L T   HWN+ G+ F ++H M +   T     LD +
Sbjct: 7268 IKDADRKQISDGLARYMADAFTLYLKTHNFHWNVTGSMFNSLHTMFETQYTEQWGALDEV 7447

Query: 81   AERAVQLGGVALGTTQVINSKTPLKSYP--LDIHNVQDHLKELADRYAIVANDVRKAIG- 137
            AER   LG  A G+ +   + T +   P   D  + ++ +++L      V    RK +G 
Sbjct: 7448 AERIRALGYNAPGSYREFVALTSIPEEPGLSDSADWREMVRQLVSGNEAVCRTARKVLGT 7627

Query: 138  --EAKDDDTADILTAASRDLDKFLWFIES 164
              +A DD T D+LT   +  +K+ W + S
Sbjct: 7628 ADDAGDDPTVDLLTQRLQTHEKYAWMLRS 7714


  Database: xc
    Posted date:  Nov 2, 2009 10:10 PM
  Number of letters in database: 5,103,728
  Number of sequences in database:  460
  
Lambda     K      H
   0.318    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 597,545
Number of extensions: 6445
Number of successful extensions: 67
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,701,242
Length adjustment: 80
Effective length of query: 87
Effective length of database: 1,664,442
Effective search space: 144806454
Effective search space used: 144806454
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)