BLASTN 2.2.32+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and
Webb Miller (2000), "A greedy algorithm for aligning DNA
sequences", J Comput Biol 2000; 7(1-2):203-14.


RID: 2WF9EE4D014


Database: Nucleotide collection (nt)
           33,081,743 sequences; 106,026,924,574 total letters
Query= clear sequence from WSV23_COI_F_A01_WSBS-Seq-1-08-15

Length=695


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|EU835671.1|  Terebella tantabiddycreekensis cytochrome oxid...  42.8    1e-05
gb|JX966313.1|  Terebella ehrenbergi voucher CASMB VNR6 cytoch...  39.2    2e-04

ALIGNMENTS
>gb|EU835671.1| Terebella tantabiddycreekensis cytochrome oxidase subunit I (COI) 
gene, partial cds; mitochondrial
Length=671

 Score = 42.8 bits (46),  Expect = 1e-05
 Identities = 52/71 (73%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  226  AACTGATTAATCCCACTTATATTAGGCGCACCAGACATAGCCTTCCCACGAATAAACAAT  285
            |||||  | ||||| |||||  |||| || ||||| || ||  | || || || || |||
Sbjct  199  AACTGGATGATCCCGCTTATGATAGGTGCCCCAGATATGGCGCTGCCGCGTATGAATAAT  258

Query  286  ATAAGGTTTTG  296
            || || |||||
Sbjct  259  ATGAGTTTTTG  269


>gb|JX966313.1| Terebella ehrenbergi voucher CASMB VNR6 cytochrome oxidase subunit 
I (COI) gene, partial cds; mitochondrial
Length=643

 Score = 39.2 bits (42),  Expect = 2e-04
 Identities = 51/71 (72%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  226  AACTGATTAATCCCACTTATATTAGGCGCACCAGACATAGCCTTCCCACGAATAAACAAT  285
            |||||  | ||||| || ||| | || || || ||||| ||  | || || || || |||
Sbjct  199  AACTGGATGATCCCCCTAATAATGGGGGCCCCGGACATGGCGCTGCCGCGTATGAATAAT  258

Query  286  ATAAGGTTTTG  296
            || || |||||
Sbjct  259  ATGAGTTTTTG  269


  Database: Nucleotide collection (nt)
    Posted date:  Oct 21, 2015  1:57 PM
  Number of letters in database: 164,390
  Number of sequences in database:  193

Lambda      K        H
   0.634    0.408    0.914 
Gapped
Lambda      K        H
   0.625    0.410    0.780 
Matrix: blastn matrix:2 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 193
Number of Hits to DB: 0
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 695
Length of database: 164390
Length adjustment: 20
Effective length of query: 675
Effective length of database: 160530
Effective search space: 108357750
Effective search space used: 108357750
A: 40
X1: 22 (20.1 bits)
X2: 66 (59.5 bits)
X3: 110 (99.2 bits)
S1: 25 (23.8 bits)
S2: 25 (23.8 bits)