FastQCFastQC Report
Вс 30 ноя 2014
Ath_tae_CTTGTA_L003_R2_005.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R2_005.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA5850.018.66930246-47
GAGCGTC9100.017.222739
TGGTCGC7000.016.28086542-43
GGGCGCC2252.3028406E-914.77337742-43
GGTCGCC5700.014.16244842-43
GTCGCCG8350.013.07993744-45
AGAGCGT13150.012.6407188
CCGTATC8750.011.67189448-49
AAGAGCG16050.011.5402067
AGCGTCG10300.011.29736910-11
GGCGCCC1500.00589231511.08003344-45
TCGGAAG16850.010.9965683
GGCCCGG4356.754024E-510.9188836
TGGCCCG3953.3544935E-410.8244355
CGTCGTG10550.010.12845512-13
GGTGGTC12250.010.07869440-41
TCGGTGG11950.09.93583338-39
GATCGGA22300.09.3725711
GTACTGG5801.2207718E-49.0089811
ATGGCCC6001.7606655E-48.7103164
Produced by FastQC (version 0.11.2)