BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= J01670 J01670.1 E.coli pyrBI operon coding for aspartate transcarbamoylase catalytic and regulatory chains. (936 letters) Database: thr 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section... 511 e-145 >AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of 220 of the complete genome. Length = 20095 Score = 511 bits (258), Expect = e-145 Identities = 633/758 (83%) Strand = Plus / Minus Query: 1 atggctaatccgctatatcagaaacatatcatttccataaacgaccttagtcgcgatgac 60 |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| || Sbjct: 10035 atggctaacccgctatatcaaaaacatatcatttccataaacgacctcagccgcgacgat 9976 Query: 61 cttaatctggtgctggcgacagcggcgaaactgaaagcaaacccgcaaccagagctgttg 120 ||||||||||| |||||||| ||||||||| | ||||| |||||||| || ||||| ||| Sbjct: 9975 cttaatctggtactggcgacggcggcgaaattaaaagccaacccgcagccggagcttttg 9916 Query: 121 aagcacaaagtcattgccagctgtttcttcgaagcctctacccgtacccgcctctctttt 180 || || ||||| || |||||||| || ||||||||||| || ||||||||||| || ||| Sbjct: 9915 aaacataaagtgatcgccagctgctttttcgaagcctccacgcgtacccgcctgtcgttt 9856 Query: 181 caaacatctatgcaccgcctgggggccagcgtggtgggcttctccgacagcgccaataca 240 |||| || ||||| |||||||| |||||||| ||||||||||||||||||||||| || Sbjct: 9855 gaaacttcaatgcatcgcctgggcgccagcgtagtgggcttctccgacagcgccaacacg 9796 Query: 241 tcactgggtaaaaaaggcgaaacgcttgccgataccatttcagttatcagcacttacgtc 300 || ||||| |||||||| |||||| | ||||| || || ||||| || ||||||||||| Sbjct: 9795 tcgctggggaaaaaaggagaaacgttagccgacacgatctcagtgattagcacttacgtg 9736 Query: 301 gatgcgatagtgatgcgtcatccgcaggaaggtgcggcgcgcctggccaccgagttttcc 360 || ||||| |||||||| |||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 9735 gacgcgattgtgatgcgccatccgcaagaaggcgcggcacgtctggcgacggagttttcc 9676 Query: 361 ggcaatgtaccggtactgaatgccggtgatggctccaaccaacatccgacgcaaaccttg 420 || | || ||||| || ||||| || || || || ||||| |||||||| || ||| || Sbjct: 9675 ggtcaggtgccggtgctcaatgcgggcgacggttcgaaccagcatccgacacagaccctg 9616 Query: 421 ctggacttattcactattcaggaaacccaggggcgtctggacaatctccacgtcgcaatg 480 |||| | ||||| || |||||||| ||||| |||||||| || | || |||| ||| Sbjct: 9615 ttggatctgttcaccatccaggaaacgcagggccgtctggataacttgcatatcgcgatg 9556 Query: 481 gttggtgacctgaaatatggtcgcaccgttcactccctgactcaggcgttagctaagttc 540 || || || ||||||||||| |||||||| || || || || |||||| | || || || Sbjct: 9555 gtcggcgatctgaaatatggccgcaccgtgcattcgctaacccaggcgctggcgaaattt 9496 Query: 541 gacggcaaccgtttttacttcatcgcgccggacgcgctggcaatgccgcaatacattctg 600 ||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| Sbjct: 9495 agcggcaaccgtttttattttatcgcgccggacgcgctggcgatgccgcagtacattctg 9436 Query: 601 gatatgctcgatgaaaaagggatcgcatggagtctgcacagctctattgaagaagtgatg 660 |||||||| |||||||||||||| || ||||| ||||| | ||||||||||| || ||| Sbjct: 9435 gatatgctggatgaaaaagggatggcctggagcctgcatggttctattgaagaggtcatg 9376 Query: 661 gtggaagtagacatcctgtacatgacccgcgtgcaaaaagagcgtctggacccgtccgag 720 | || || |||||||| || ||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 9375 gccgacgtcgacatcctctatatgactcgcgtacagaaagagcgtctcgacccgtcggag 9316 Query: 721 tacgccaacgtgaaagcgcagtttgttcttcgcgccag 758 |||||||| ||||| |||||||||||||| |||||||| Sbjct: 9315 tacgccaatgtgaaggcgcagtttgttctgcgcgccag 9278 Score = 129 bits (65), Expect = 1e-29 Identities = 110/125 (88%) Strand = Plus / Minus Query: 781 aatatgaaagtgctgcatccgttgccgcgtgttgatgagattgcgacggatgttgataaa 840 ||||||||||||||||| ||| ||||||| ||||||| || | |||||||| |||||| Sbjct: 9255 aatatgaaagtgctgcacccgctgccgcggattgatgaaatcaccacggatgtggataaa 9196 Query: 841 acgccacacgcctggtacttccagcaggcaggcaacgggattttcgctctgcaagcgtta 900 ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||| Sbjct: 9195 acgccacacgcctggtacttccaacaggcgggcaacggtattttcgctcgccaggcgtta 9136 Query: 901 ctggc 905 ||||| Sbjct: 9135 ctggc 9131 Database: thr Posted date: Feb 20, 2008 8:14 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 142,083 Number of extensions: 8872 Number of successful extensions: 67 Number of sequences better than 1.0e-03: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 2 Length of query: 936 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 919 Effective length of database: 12,228,859 Effective search space: 11238321421 Effective search space used: 11238321421 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)