BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= M10743 M10743.1 E.coli pyrBI operon promoter-regulatory region
including leader peptide and 5' end of pyrB gene coding for the
catalytic subunit of aspartate transcarbamoylase (ATCase).
         (162 letters)

Database: fg 
           884 sequences; 12,243,887 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section...   147   9e-36

>AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of
             220 of the complete genome.
          Length = 20095

 Score =  147 bits (74), Expect = 9e-36
 Identities = 137/158 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     atggctaatccgctatatcagaaacatatcatttccataaacgaccttagtcgcgatgac 60
             |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| || 
Sbjct: 10035 atggctaacccgctatatcaaaaacatatcatttccataaacgacctcagccgcgacgat 9976

                                                                         
Query: 61    cttaatctggtgctggcgacagcggcgaaactgaaagcaaacccgcaaccagagctgttg 120
             ||||||||||| |||||||| ||||||||| | ||||| |||||||| || ||||| |||
Sbjct: 9975  cttaatctggtactggcgacggcggcgaaattaaaagccaacccgcagccggagcttttg 9916

                                                   
Query: 121   aagcacaaagtcattgccagctgtttcttcgaggcctc 158
             || || ||||| || |||||||| || ||||| |||||
Sbjct: 9915  aaacataaagtgatcgccagctgctttttcgaagcctc 9878


  Database: fg
    Posted date:  Dec 18, 2007  6:08 PM
  Number of letters in database: 12,243,887
  Number of sequences in database:  884
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 884
Number of Hits to DB: 21,910
Number of extensions: 1351
Number of successful extensions: 38
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 12,243,887
Length adjustment: 16
Effective length of query: 146
Effective length of database: 12,229,743
Effective search space: 1785542478
Effective search space used: 1785542478
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 21 (42.1 bits)