TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PYRB_ECOLI P0A786 Aspartate carbamoyltransferase catalytic chain (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase). (311 letters) Database: pm 204 sequences; 2,269,587 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value embl|AE006119|AE006119 Pasteurella multocida subsp. multocida st... 77 9e-16 embl|AE006208|AE006208 Pasteurella multocida subsp. multocida st... 26 3.2 embl|AE006054|AE006054 Pasteurella multocida subsp. multocida st... 25 4.2 embl|AE006168|AE006168 Pasteurella multocida subsp. multocida st... 25 5.5 embl|AE006166|AE006166 Pasteurella multocida subsp. multocida st... 25 5.5 embl|AE006038|AE006038 Pasteurella multocida subsp. multocida st... 25 7.2 >embl|AE006119|AE006119 Pasteurella multocida subsp. multocida str. Pm70 section 86 of 204 of the complete genome. Length = 10661 Score = 77.4 bits (189), Expect = 9e-16 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 16/292 (5%) Frame = +1 Query: 5 LYQKHIISINDLSRDDLNLVLATAAKLK-----ANPQPELLKHKVIASCFFEASTRTRLS 59 L +H + + D + ++ +L +A LK QP L K K IA F + STRTR S Sbjct: 7294 LRHRHFLRLMDFTPTEIQFLLDLSANLKKAKYTGTEQPRL-KGKNIALIFEKTSTRTRCS 7470 Query: 60 FETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEF 119 FE + + GA+V + + + +G K E++ DT V+ D I R + + ++ Sbjct: 7471 FEVAAYDQGANVT-YIGPSGSQIGHK-ESMKDTARVLGRMYDGIQYRGYGQELVEILAQY 7644 Query: 120 SGNVPVLNAGDGSNQHPTQTLLDLFTIQE--TQGRLDNLHVAMVGDLKYGRTVHSLTQAL 177 SG VPV N G + HPTQ L D T+ E RL+ + +A +GD + +S + Sbjct: 7645 SG-VPVWN-GLTDDFHPTQILADFLTMLEHGEGKRLNQMKMAYLGDAR-NNMGNSFVEGA 7815 Query: 178 AKFDGNRFYFIAPDALAMPQYILD----MLDEKGIAWSLHSSIEEVMAEVDILYMTRVQK 233 A G +AP A Q +LD M + G + ++EE + VD LY T + Sbjct: 7816 ALM-GMDLRLVAPKAYWPEQKLLDEVAEMAKKTGAKITCTENVEEGVKGVDFLY-TDIWV 7989 Query: 234 ERLDPSEYAN-----VKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDK 280 +P E +K V +A +K +H LP + T V K Sbjct: 7990 SMGEPEEAWEQRINLMKPYQVNKALLEKTGNPKVKFMHCLPAFHDENTTVGK 8145 >embl|AE006208|AE006208 Pasteurella multocida subsp. multocida str. Pm70 section 175 of 204 of the complete genome. Length = 8850 Score = 25.8 bits (55), Expect = 3.2 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%) Frame = +3 Query: 92 TISVISTYVDAIVMRHPQE------------GAARLATEFSGNVPVLNAGDGSNQHPTQT 139 TI ST + AI++RH + G + + + + + +N+G+ N PT+T Sbjct: 2910 TILSKSTRIPAILIRHSAQVELQNRGNIKSLGHSAVFIQNANKIDFMNSGNLENSDPTKT 3089 Query: 140 LLDL 143 ++ L Sbjct: 3090 VVSL 3101 >embl|AE006054|AE006054 Pasteurella multocida subsp. multocida str. Pm70 section 21 of 204 of the complete genome. Length = 11152 Score = 25.4 bits (54), Expect = 4.2 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = -2 Query: 3 NPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVI 45 N + + I+ NDL L L+ +A LKA P+ +L + ++ Sbjct: 1008 NTVTTRVILLRNDLGEGSLGLMAPLSAPLKAPPRSDLNANSIL 880 >embl|AE006168|AE006168 Pasteurella multocida subsp. multocida str. Pm70 section 135 of 204 of the complete genome. Length = 11367 Score = 25.0 bits (53), Expect = 5.5 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 104 VMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDL 143 + RH EG R+ NV VLNAG+G N P L L Sbjct: 10797 IARHG-EGMTRI------NVGVLNAGEGRNVIPATAQLQL 10895 >embl|AE006166|AE006166 Pasteurella multocida subsp. multocida str. Pm70 section 133 of 204 of the complete genome. Length = 11061 Score = 25.0 bits (53), Expect = 5.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 108 PQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQ 147 P A + T+F + PVL+ G +P++ + DLFT Q Sbjct: 1672 PCRTAEEVKTQFGADFPVLDLPVGEATNPSE-IRDLFTHQ 1788 >embl|AE006038|AE006038 Pasteurella multocida subsp. multocida str. Pm70 section 5 of 204 of the complete genome. Length = 12631 Score = 24.6 bits (52), Expect = 7.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 47 SCFFEASTRTRLSFETSMHRLGASVV 72 +CF +STR R SF S++ SVV Sbjct: 3052 NCFAYSSTRPRFSFFNSINAANFSVV 3129 Database: pm Posted date: Dec 18, 2007 5:10 PM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.319 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 204 Number of Hits to DB: 625,599 Number of extensions: 7446 Number of successful extensions: 31 Number of sequences better than 10.0: 6 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 6 Length of query: 311 Length of database: 756,529 Length adjustment: 82 Effective length of query: 229 Effective length of database: 739,801 Effective search space: 169414429 Effective search space used: 169414429 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)