TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PYRB_ECOLI P0A786 Aspartate carbamoyltransferase catalytic chain (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase). (311 letters) Database: fg 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section... 571 e-164 AE012388 AE008922 |AE012388| Xanthomonas campestris pv. campestr... 128 2e-30 embl|AE006119|AE006119 Pasteurella multocida subsp. multocida st... 77 5e-15 AE012332 AE008922 |AE012332| Xanthomonas campestris pv. campestr... 55 3e-08 AE008762 AE006468 |AE008762| Salmonella typhimurium LT2, section... 30 0.68 AE008914 AE006468 |AE008914| Salmonella typhimurium LT2, section... 27 7.5 AE012202 AE008922 |AE012202| Xanthomonas campestris pv. campestr... 27 7.5 AE012528 AE008922 |AE012528| Xanthomonas campestris pv. campestr... 27 9.8 >AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of 220 of the complete genome. Length = 20095 Score = 571 bits (1472), Expect = e-164 Identities = 286/298 (95%), Positives = 292/298 (97%) Frame = -2 Query: 1 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF 60 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF Sbjct: 10035 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF 9856 Query: 61 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS 120 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS Sbjct: 9855 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS 9676 Query: 121 GNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKF 180 G VPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLH+AMVGDLKYGRTVHSLTQALAKF Sbjct: 9675 GQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKF 9496 Query: 181 DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE 240 GNRFYFIAPDALAMPQYILDMLDEKG+AWSLH SIEEVMA+VDILYMTRVQKERLDPSE Sbjct: 9495 SGNRFYFIAPDALAMPQYILDMLDEKGMAWSLHGSIEEVMADVDILYMTRVQKERLDPSE 9316 Query: 241 YANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQ 298 YANVKAQFVLRASDL+ A+ NMKVLHPLPR+DEI TDVDKTPHAWYFQQAGNGIFARQ Sbjct: 9315 YANVKAQFVLRASDLNGARENMKVLHPLPRIDEITTDVDKTPHAWYFQQAGNGIFARQ 9142 Score = 75.5 bits (184), Expect = 2e-14 Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%) Frame = -1 Query: 6 YQKHIISINDLSRDDLNLVLATAAKLKANP----QPELLKHKVIASCFFEASTRTRLSFE 61 YQK + + D + +L +L AAKLKA+ + + L K IA F + STRTR SFE Sbjct: 17869 YQKPFLKLLDFTASELTALLQLAAKLKADKKNGKEEQKLVGKNIALIFEKDSTRTRCSFE 17690 Query: 62 TSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 121 + + GA V + S+ + +G K E++ DT V+ D I R + E+SG Sbjct: 17689 VAAYDQGARVT-YLGSSGSQIGHK-ESIKDTARVLGRMFDGIQYRGYGQEIVETLAEYSG 17516 Query: 122 NVPVLNAGDGSNQHPTQTLLDLFTIQE-TQGRLDN-LHVAMVGDLKYGRTVHSLTQALAK 179 VPV N G HPTQ L DL T+QE G+ N + + GD + +S+ +A A Sbjct: 17515 -VPVWN-GLTDEYHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDAR-NNMGNSMLEA-AA 17348 Query: 180 FDGNRFYFIAPDALAMPQYIL-----DMLDEKGIAWSLHSSIEEVMAEVDILY 227 G +AP A PQ L M + G A +L I + D +Y Sbjct: 17347 LTGLDLRLVAPKA-CWPQAALVAECSAMAKKNGGAITLTEDIASGVKGADFIY 17192 >AE012388 AE008922 |AE012388| Xanthomonas campestris pv. campestris str. ATCC 33913, section 296 of 460 of the complete genome. Length = 10043 Score = 128 bits (321), Expect = 2e-30 Identities = 97/303 (32%), Positives = 148/303 (48%), Gaps = 13/303 (4%) Frame = -2 Query: 8 KHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIA-----SCFFEASTRTRLSFET 62 +H++++ L R L +L A +++ + K V+A + FFE STRTR SF Sbjct: 1912 RHLLTLEGLPRATLLQLLDRAGQIRDAAVGRVGKRSVLAGTAVCTLFFEPSTRTRSSFHL 1733 Query: 63 SMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY-VDAIVMRHPQEGAARLATEFSG 121 + RLGA V+ F A+TS +KGET DT+ + V V+RHP++GA E +G Sbjct: 1732 AAQRLGADVLNFD--ASTSSTRKGETARDTLKNLEAMGVRGFVVRHPEDGAVERLAEAAG 1559 Query: 122 N-VPVLNAGDGSNQHPTQTLLDLFTIQETQGR-LDNLHVAMVGDLKYGRTVHSLTQALAK 179 ++NAGDG + HPTQ LLD+ T+++ +G L V +VGD+K+ R S AL Sbjct: 1558 EGTALINAGDGRSAHPTQGLLDMLTLRQAKGTDFSKLKVVIVGDVKHSRVARSDLHALRT 1379 Query: 180 FDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPS 239 P +L DMLD + + ++ D L M R+Q+ER++ Sbjct: 1378 LGAGEIRVCGPASLLPDD---DMLD----GCVVGEDFDAMLEGADALMMLRLQRERMEEG 1220 Query: 240 EYANVK---AQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGI 294 +++ A + L L A + VLHP P R EI +V + +Q NG+ Sbjct: 1219 LVPSLEQYHADYGLTRERLARAGRDAAVLHPGPINRGVEITDEVADGAQSCVLRQVANGV 1040 Query: 295 FAR 297 R Sbjct: 1039 AVR 1031 >embl|AE006119|AE006119 Pasteurella multocida subsp. multocida str. Pm70 section 86 of 204 of the complete genome. Length = 10661 Score = 77.4 bits (189), Expect = 5e-15 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 16/292 (5%) Frame = +1 Query: 5 LYQKHIISINDLSRDDLNLVLATAAKLK-----ANPQPELLKHKVIASCFFEASTRTRLS 59 L +H + + D + ++ +L +A LK QP L K K IA F + STRTR S Sbjct: 7294 LRHRHFLRLMDFTPTEIQFLLDLSANLKKAKYTGTEQPRL-KGKNIALIFEKTSTRTRCS 7470 Query: 60 FETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEF 119 FE + + GA+V + + + +G K E++ DT V+ D I R + + ++ Sbjct: 7471 FEVAAYDQGANVT-YIGPSGSQIGHK-ESMKDTARVLGRMYDGIQYRGYGQELVEILAQY 7644 Query: 120 SGNVPVLNAGDGSNQHPTQTLLDLFTIQE--TQGRLDNLHVAMVGDLKYGRTVHSLTQAL 177 SG VPV N G + HPTQ L D T+ E RL+ + +A +GD + +S + Sbjct: 7645 SG-VPVWN-GLTDDFHPTQILADFLTMLEHGEGKRLNQMKMAYLGDAR-NNMGNSFVEGA 7815 Query: 178 AKFDGNRFYFIAPDALAMPQYILD----MLDEKGIAWSLHSSIEEVMAEVDILYMTRVQK 233 A G +AP A Q +LD M + G + ++EE + VD LY T + Sbjct: 7816 ALM-GMDLRLVAPKAYWPEQKLLDEVAEMAKKTGAKITCTENVEEGVKGVDFLY-TDIWV 7989 Query: 234 ERLDPSEYAN-----VKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDK 280 +P E +K V +A +K +H LP + T V K Sbjct: 7990 SMGEPEEAWEQRINLMKPYQVNKALLEKTGNPKVKFMHCLPAFHDENTTVGK 8145 >AE012332 AE008922 |AE012332| Xanthomonas campestris pv. campestris str. ATCC 33913, section 240 of 460 of the complete genome. Length = 11470 Score = 54.7 bits (130), Expect = 3e-08 Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 17/164 (10%) Frame = -1 Query: 8 KHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRL 67 KH ++ D SR +L+ +L AA K N LK K IA FF S RTR SFE +L Sbjct: 7069 KHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQL 6890 Query: 68 GASVVGFS----------DSANTSLGKKGETLADTISVISTYVDAIVMR-------HPQE 110 G V + G E +A+ V+ YVD I +R ++ Sbjct: 6889 GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKD 6710 Query: 111 GAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLD 154 ++ F+ PV + HP Q L +QE G D Sbjct: 6709 REDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPD 6578 >AE008762 AE006468 |AE008762| Salmonella typhimurium LT2, section 66 of 220 of the complete genome. Length = 21913 Score = 30.4 bits (67), Expect = 0.68 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%) Frame = -3 Query: 3 NPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFET 62 N ++ +S N +S +DL+ ++AN L +T + ++ Sbjct: 17606 NEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVAL-------------ATLKQAQWQL 17466 Query: 63 SMHRLGASVVGFSDSANTSLGKKGET------LADTISV-ISTYVDAIVMRHPQEGAARL 115 S + A V G+ + +T G T L D+ S + Y + +RH +EG L Sbjct: 17465 SQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPAL 17286 Query: 116 ATEFSGNV 123 T +SGNV Sbjct: 17285 ITLYSGNV 17262 >AE008914 AE006468 |AE008914| Salmonella typhimurium LT2, section 218 of 220 of the complete genome. Length = 22694 Score = 26.9 bits (58), Expect = 7.5 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 182 GNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMA 221 G Y+I AL MP Y+L L G+ W L S E M+ Sbjct: 8490 GLSHYYIYSGALRMPNYVLPFL---GLPWLLVRSQERRMS 8380 >AE012202 AE008922 |AE012202| Xanthomonas campestris pv. campestris str. ATCC 33913, section 110 of 460 of the complete genome. Length = 10278 Score = 26.9 bits (58), Expect = 7.5 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -3 Query: 33 ANPQPELLKHKVIASCFFEASTRTRLS---FETSMHRLGASVVGFSDSANTSLGKKGETL 89 A+P P L K + SC+ A + +RLS S R G + + A S K TL Sbjct: 9631 ASPMPLRLPIKRVRSCWISAESSSRLSQPNVANSADRCGTAYARQAARAAWSRSKLPSTL 9452 Query: 90 ADTISVIS 97 + ++ IS Sbjct: 9451 S*MLATIS 9428 >AE012528 AE008922 |AE012528| Xanthomonas campestris pv. campestris str. ATCC 33913, section 436 of 460 of the complete genome. Length = 11874 Score = 26.6 bits (57), Expect = 9.8 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +1 Query: 146 IQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQY 198 I++ LD+ HV GD + +V+ L + LA PD+ P Y Sbjct: 1870 IKDVSFALDDFHVRWFGDGELNASVNCLDRQLATRGDKTALLFEPDSPDSPSY 2028 Database: fg Posted date: Dec 18, 2007 6:08 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.319 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 3,645,201 Number of extensions: 44897 Number of successful extensions: 226 Number of sequences better than 10.0: 8 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 9 Length of query: 311 Length of database: 4,081,295 Length adjustment: 93 Effective length of query: 218 Effective length of database: 3,999,083 Effective search space: 871800094 Effective search space used: 871800094 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)