########################################
# Program: needle
# Rundate: Wed 12 Mar 2008 16:51:02
# Commandline: needle
#    -asequence choler_gen.fasta
#    -bsequence pyrb_gen.fasta
#    -gapopen 20
#    -gapextend 4
#    -outfile nucleot2.txt
# Align_format: srspair
# Report_file: nucleot2.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: cholera
# 2: PyrB
# Matrix: EDNAFULL
# Gap_penalty: 20.0
# Extend_penalty: 4.0
#
# Length: 936
# Identity:     628/936 (67.1%)
# Similarity:   628/936 (67.1%)
# Gaps:           6/936 ( 0.6%)
# Score: 1932.0
# 
#
#=======================================

cholera            1 atggcgaattcgctttaccaaaagcacatcatctccattgctgaactctc     50
                     |||||.|||.||||.||.||.||.||.|||||.|||||....||.||...
PyrB               1 atggctaatccgctatatcagaaacatatcatttccataaacgaccttag     50

cholera           51 acgcgcggagttggagttgattgtgaaaaccgcaggccaactgaaggcac    100
                     .||||..||..|..|..||.|..||...||.||.|...|||||||.|||.
PyrB              51 tcgcgatgaccttaatctggtgctggcgacagcggcgaaactgaaagcaa    100

cholera          101 aaccgaatccagagctgatcaagcacaaggtcgtggccagctgtttcttt    150
                     |.|||.|.|||||||||.|.||||||||.|||.|.||||||||||||||.
PyrB             101 acccgcaaccagagctgttgaagcacaaagtcattgccagctgtttcttc    150

cholera          151 gaaccttccacccgtactcgcctctcattcgagacagcaatccaacgtat    200
                     |||.|.||.||||||||.||||||||.||..|.|||.|.||.||.||..|
PyrB             151 gaagcctctacccgtacccgcctctcttttcaaacatctatgcaccgcct    200

cholera          201 cggtggcagcgtgattggctttgataacggcggcaacacgtcactagcga    250
                     .||.|.|||||||.|.|||||.....||.|||.|||.||.|||||.|..|
PyrB             201 gggggccagcgtggtgggcttctccgacagcgccaatacatcactgggta    250

cholera          251 agaaaggcgaaaccctagccgattcagtacgcgtcatctcctcttatgtt    300
                     |.|||||||||||.||.||||||.|..|....||.|||..|.||||.||.
PyrB             251 aaaaaggcgaaacgcttgccgataccatttcagttatcagcacttacgtc    300

cholera          301 gatgcttttgtgatgcgtcatccgcaagaaggtgccgcgcgtttagcgtc    350
                     |||||..|.|||||||||||||||||.||||||||.|||||..|.||..|
PyrB             301 gatgcgatagtgatgcgtcatccgcaggaaggtgcggcgcgcctggccac    350

cholera          351 tgaattttctaacggcgtcccagtgattaacgccggtgatggttcaaacc    400
                     .||.|||||...|...||.||.||..|.||.|||||||||||.||.||||
PyrB             351 cgagttttccggcaatgtaccggtactgaatgccggtgatggctccaacc    400

cholera          401 aacacccatcgcaaaccctgctcgatctctactccattttcgaaacccaa    450
                     ||||.||..||||||||.||||.||..|.|.|.|.|||...||||||||.
PyrB             401 aacatccgacgcaaaccttgctggacttattcactattcaggaaacccag    450

cholera          451 ggccgtctcgataacctcgatgtcgcgttcgtcggtgatttaaaatatgg    500
                     ||.|||||.||.||.|||.|.|||||..|.||.|||||..|.||||||||
PyrB             451 gggcgtctggacaatctccacgtcgcaatggttggtgacctgaaatatgg    500

cholera          501 tcgcaccgtgcattcgctggcacaagctctggctaaatttgataacaacc    550
                     |||||||||.||.||.|||.|.||.||..|.|||||.||.||...|||||
PyrB             501 tcgcaccgttcactccctgactcaggcgttagctaagttcgacggcaacc    550

cholera          551 gcttctactttgtggcaccggaagccctagcgatgccagactacatctgt    600
                     |.||.|||||..|.||.|||||.||.||.||.|||||..|.|||||....
PyrB             551 gtttttacttcatcgcgccggacgcgctggcaatgccgcaatacattctg    600

cholera          601 gaagagctggatgaagcaggtgtgaaataccaagtgttcagcgatatgga    650
                     ||...|||.||||||..|||..|...||......||..||||..|||.||
PyrB             601 gatatgctcgatgaaaaagggatcgcatggagtctgcacagctctattga    650

cholera          651 aagcgtgatcccagagctggatattctgtacatgacgcgtgtacagaaag    700
                     |...|||||....||..|.||.||.|||||||||||.||.||.||.||||
PyrB             651 agaagtgatggtggaagtagacatcctgtacatgacccgcgtgcaaaaag    700

cholera          701 aacgttttgatgagtcggaatacgcacatatcaaatcggcctatatcttg    750
                     |.|||.|.||...|||.||.|||||..|..|.|||.||...|.|.|..|.
PyrB             701 agcgtctggacccgtccgagtacgccaacgtgaaagcgcagtttgttctt    750

cholera          751 acggccgctcacctgagcgatgcgcgcagcaatctgaaagtgctgcaccc    800
                     ...|||..|.|.||...|.|.||......||||.|||||||||||||.||
PyrB             751 cgcgccagtgatctccacaacgccaaagccaatatgaaagtgctgcatcc    800

cholera          801 actgccacgggtggatgagatcaccactgatgtcgataaaaccccacacg    850
                     ..||||.||.||.||||||||..|.||.|||||.||||||||.|||||||
PyrB             801 gttgccgcgtgttgatgagattgcgacggatgttgataaaacgccacacg    850

cholera          851 cttactatttcgagcaagttgaaaacggagtttatgcccgtgaagccttg    900
                     |.|..||.|||.||||.|..|..|||||..|||..||.|...||||.||.
PyrB             851 cctggtacttccagcaggcaggcaacgggattttcgctctgcaagcgtta    900

cholera          901 ctggctctagttttgaacgaatcgctgtaa------    930
                     |||||.||.|||.||||.......|||..|      
PyrB             901 ctggcactggttctgaatcgcgatctggtactgtaa    936


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