########################################
# Program: needle
# Rundate: Wed 12 Mar 2008 16:45:30
# Commandline: needle
#    -asequence cholera.fasta
#    -bsequence pyrb_ecoli.fasta
#    -outfile protein.txt
# Align_format: srspair
# Report_file: protein.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: PYRB_VIBCH
# 2: PYRB_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     220/311 (70.7%)
# Similarity:   264/311 (84.9%)
# Gaps:           2/311 ( 0.6%)
# Score: 1168.0
# 
#
#=======================================

PYRB_VIBCH         1 MANSLYQKHIISIAELSRAELELIVKTAGQLKAQPNPELIKHKVVASCFF     50
                     |||.|||||||||.:|||.:|.|::.||.:|||.|.|||:||||:|||||
PYRB_ECOLI         1 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFF     50

PYRB_VIBCH        51 EPSTRTRLSFETAIQRIGGSVIGFDNGGNTSLAKKGETLADSVRVISSYV    100
                     |.||||||||||::.|:|.||:||.:..||||.||||||||::.|||:||
PYRB_ECOLI        51 EASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYV    100

PYRB_VIBCH       101 DAFVMRHPQEGAARLASEFSNGVPVINAGDGSNQHPSQTLLDLYSIFETQ    150
                     ||.|||||||||||||:|||..|||:||||||||||:||||||::|.|||
PYRB_ECOLI       101 DAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQ    150

PYRB_VIBCH       151 GRLDNLDVAFVGDLKYGRTVHSLAQALAKFDNNRFYFVAPEALAMPDYIC    200
                     ||||||.||.|||||||||||||.|||||||.|||||:||:|||||.||.
PYRB_ECOLI       151 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYIL    200

PYRB_VIBCH       201 EELDEAGVKYQVFSDMESVIPELDILYMTRVQKERFDESEYAHIKSAYIL    250
                     :.|||.|:.:.:.|.:|.|:.|:||||||||||||.|.||||::|:.::|
PYRB_ECOLI       201 DMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVL    250

PYRB_VIBCH       251 TAAHLSDARSNLKVLHPLPRVDEITTDVDKTPHAYYFEQVENGVYAREAL    300
                     .|:.|.:|::|:||||||||||||.|||||||||:||:|..||::||:||
PYRB_ECOLI       251 RASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQAL    300

PYRB_VIBCH       301 LALVLNESL--    309
                     ||||||..|  
PYRB_ECOLI       301 LALVLNRDLVL    311


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