MAST - Motif Alignment and Search Tool
MAST version 4.1.1 (Release date: Tue Apr 21 15:00:06 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed101.fasta (peptide)
Last updated on Sun May 16 00:06:12 2010
Database contains 50 sequences, 5223 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 50 FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
2 29 TLMLFKDGQRVHTQVGYRPKEQLANFLNK
3 15 TDATFESETSNSDIL
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.16
3 0.23 0.15
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 50 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| THIO_CYACA/3-106
|
| 4.6e-83
| 104
|
|
| THIO_HAEIN/3-106
|
| 5e-83
| 104
|
|
| THIO1_SYNE7/5-106
|
| 1.2e-82
| 102
|
|
| THIO_STRAU/3-105
|
| 2.6e-50
| 103
|
|
| TRXM_CHLRE/37-138
|
| 1.9e-48
| 102
|
|
| THIO1_CORNE/3-104
|
| 3e-47
| 102
|
|
| THIO_SHIFL/4-107
|
| 1.4e-44
| 104
|
|
| THIO_RHOSH/4-105
|
| 1.2e-41
| 102
|
|
| THIO2_CORNE/4-107
|
| 1.8e-38
| 104
|
|
| TRXB_MYCLE/350-453
|
| 2.1e-36
| 104
|
|
| THIO2_ANASP/4-107
|
| 1.4e-18
| 104
|
|
| TRXH_CHLRE/5-110
|
| 7.9e-17
| 106
|
|
| BS2_TRYBB/20-122
|
| 7.3e-12
| 103
|
|
| PDIA3_MOUSE/26-131
|
| 6.2e-11
| 106
|
|
| PDIA6_MESAU/26-130
|
| 5.5e-09
| 105
|
|
| TRXF_PEA/77-179
|
| 9.5e-09
| 103
|
|
| TRX1_YEAST/2-102
|
| 2.4e-08
| 101
|
|
| TRXF_SPIOL/85-187
|
| 3e-08
| 103
|
|
| TXLA_SYNE7/39-146
|
| 2.3e-07
| 108
|
|
| THIO_EMENI/7-108
|
| 2.8e-07
| 102
|
|
| TRXH1_TOBAC/14-118
|
| 3.6e-07
| 105
|
|
| PDI_MEDSA/378-483
|
| 1.6e-06
| 106
|
|
| PDIA6_MEDSA/30-135
|
| 3e-06
| 106
|
|
| PDIA6_MESAU/161-268
|
| 2.1e-05
| 108
|
|
| THIO1_CAEEL/10-111
|
| 2.4e-05
| 102
|
|
| ERP60_SCHMA/18-123
|
| 4.1e-05
| 106
|
|
| BS2_TRYBB/350-453
|
| 4.1e-05
| 104
|
|
| TRXH2_TOBAC/7-111
|
| 5.2e-05
| 105
|
|
| PDIA6_MEDSA/148-254
|
| 5.4e-05
| 107
|
|
| THIO_PENCH/3-104
|
| 5.7e-05
| 102
|
|
| PDI_YEAST/377-482
|
| 0.00013
| 106
|
|
| TRXH1_ARATH/8-112
|
| 0.00018
| 105
|
|
| TRX3_YEAST/27-127
|
| 0.00019
| 101
|
|
| GSBP_CHICK/369-472
|
| 0.00025
| 104
|
|
| PDIA4_RAT/524-632
|
| 0.00036
| 109
|
|
| PDIA4_CAEEL/148-252
|
| 0.0011
| 105
|
|
| PDIA4_RAT/176-280
|
| 0.0013
| 105
|
|
| PDI_MEDSA/34-142
|
| 0.0014
| 109
|
|
| THIO_MOUSE/6-104
|
| 0.0028
| 99
|
|
| PDIA4_CAEEL/37-137
|
| 0.0081
| 101
|
|
| THIO3_DICDI/4-103
|
| 0.011
| 100
|
|
| YIA5_YEAST/33-140
|
| 0.012
| 108
|
|
| PDIA4_MOUSE/56-159
|
| 0.013
| 104
|
|
| THIO1_DICDI/5-104
|
| 0.038
| 100
|
|
| PDI_YEAST/33-138
|
| 0.041
| 106
|
|
| PDIA3_RAT/377-483
|
| 0.088
| 107
|
|
| PDIA4_CAEEL/500-607
|
| 0.1
| 108
|
|
| PDIA1_CHICK/30-137
|
| 0.11
| 108
|
|
| ERP60_SCHMA/359-465
|
| 0.88
| 107
|
|
| GSBP_CHICK/24-131
|
| 1.4
| 108
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| THIO_CYACA/3-106
| 4.6e-83
|
|
|
| THIO_HAEIN/3-106
| 5e-83
|
|
|
| THIO1_SYNE7/5-106
| 1.2e-82
|
|
|
| THIO_STRAU/3-105
| 2.6e-50
|
|
|
| TRXM_CHLRE/37-138
| 1.9e-48
|
|
|
| THIO1_CORNE/3-104
| 3e-47
|
|
|
| THIO_SHIFL/4-107
| 1.4e-44
|
|
|
| THIO_RHOSH/4-105
| 1.2e-41
|
|
|
| THIO2_CORNE/4-107
| 1.8e-38
|
|
|
| TRXB_MYCLE/350-453
| 2.1e-36
|
|
|
| THIO2_ANASP/4-107
| 1.4e-18
|
|
|
| TRXH_CHLRE/5-110
| 7.9e-17
|
|
|
| BS2_TRYBB/20-122
| 7.3e-12
|
|
|
| PDIA3_MOUSE/26-131
| 6.2e-11
|
|
|
| PDIA6_MESAU/26-130
| 5.5e-09
|
|
|
| TRXF_PEA/77-179
| 9.5e-09
|
|
|
| TRX1_YEAST/2-102
| 2.4e-08
|
|
|
| TRXF_SPIOL/85-187
| 3e-08
|
|
|
| TXLA_SYNE7/39-146
| 2.3e-07
|
|
|
| THIO_EMENI/7-108
| 2.8e-07
|
|
|
| TRXH1_TOBAC/14-118
| 3.6e-07
|
|
|
| PDI_MEDSA/378-483
| 1.6e-06
|
|
|
| PDIA6_MEDSA/30-135
| 3e-06
|
|
|
| PDIA6_MESAU/161-268
| 2.1e-05
|
|
|
| THIO1_CAEEL/10-111
| 2.4e-05
|
|
|
| ERP60_SCHMA/18-123
| 4.1e-05
|
|
|
| BS2_TRYBB/350-453
| 4.1e-05
|
|
|
| TRXH2_TOBAC/7-111
| 5.2e-05
|
|
|
| PDIA6_MEDSA/148-254
| 5.4e-05
|
|
|
| THIO_PENCH/3-104
| 5.7e-05
|
|
|
| PDI_YEAST/377-482
| 0.00013
|
|
|
| TRXH1_ARATH/8-112
| 0.00018
|
|
|
| TRX3_YEAST/27-127
| 0.00019
|
|
|
| GSBP_CHICK/369-472
| 0.00025
|
|
|
| PDIA4_RAT/524-632
| 0.00036
|
|
|
| PDIA4_CAEEL/148-252
| 0.0011
|
|
|
| PDIA4_RAT/176-280
| 0.0013
|
|
|
| PDI_MEDSA/34-142
| 0.0014
|
|
|
| THIO_MOUSE/6-104
| 0.0028
|
|
|
| PDIA4_CAEEL/37-137
| 0.0081
|
|
|
| THIO3_DICDI/4-103
| 0.011
|
|
|
| YIA5_YEAST/33-140
| 0.012
|
|
|
| PDIA4_MOUSE/56-159
| 0.013
|
|
|
| THIO1_DICDI/5-104
| 0.038
|
|
|
| PDI_YEAST/33-138
| 0.041
|
|
|
| PDIA3_RAT/377-483
| 0.088
|
|
|
| PDIA4_CAEEL/500-607
| 0.1
|
|
|
| PDIA1_CHICK/30-137
| 0.11
|
|
|
| ERP60_SCHMA/359-465
| 0.88
|
|
|
| GSBP_CHICK/24-131
| 1.4
|
|
| SCALE
|
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
THIO_CYACA/3-106
LENGTH = 104 COMBINED P-VALUE = 9.26e-85 E-VALUE = 4.6e-83
DIAGRAM: 5-[3]-4-[1]-[2]-1
[3] [1] [
2.1e-13 5.8e-56 9
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPT
+++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++
1 SPIQVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPT
2]
.9e-27
LMLFKDGQRVHTQVGYRPKEQLANFLNK
++++++++++++++++++++++++++++
76 LMLFKDGKRVDTVIGAVPKSTLTNALKKY
THIO_HAEIN/3-106
LENGTH = 104 COMBINED P-VALUE = 9.97e-85 E-VALUE = 5e-83
DIAGRAM: 5-[3]-4-[1]-[2]-1
[3] [1] [
5.9e-13 6.1e-55 3
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPT
+++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++
1 EVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPT
2]
.5e-28
LMLFKDGQRVHTQVGYRPKEQLANFLNK
++++++++++++++++++++++++++++
76 LLLIKNGQVVATQVGALPKTQLANFINQH
THIO1_SYNE7/5-106
LENGTH = 102 COMBINED P-VALUE = 2.33e-84 E-VALUE = 1.2e-82
DIAGRAM: 3-[3]-4-[1]-[2]-1
[3] [1] [2]
2.7e-13 1.6e-53 7.5
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTLM
+++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++
1 AAVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLM
e-29
LFKDGQRVHTQVGYRPKEQLANFLNK
++++++++++++++++++++++++++
76 IFKDGQRVDTVVGAVPKTTLANTLDKH
THIO_STRAU/3-105
LENGTH = 103 COMBINED P-VALUE = 5.29e-52 E-VALUE = 2.6e-50
DIAGRAM: 4-[3]-4-[1]-[2]-1
[3] [1] [2
1.5e-10 1.4e-41 8.
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTL
+ +++++++++++++ + +++++++++++++++++ ++++++++ ++++++++ ++++++++++++
1 TVKVTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTR
]
4e-11
MLFKDGQRVHTQVGYRPKEQLANFLNK
+ ++ +++ + +++ +++ ++ +++
76 LMFKGGEVAANMVGAAPKTRLAAFLDAS
TRXM_CHLRE/37-138
LENGTH = 102 COMBINED P-VALUE = 3.73e-50 E-VALUE = 1.9e-48
DIAGRAM: 3-[3]-4-[1]-[2]-1
[3] [1] [2]
1.9e-08 2.7e-41 2.8
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTLM
++ +++ ++++++++ ++++++++++ ++++++++++++ ++++ +++++++ + ++++++++++++ +
1 GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM
e-11
LFKDGQRVHTQVGYRPKEQLANFLNK
+++ ++ +++++++++ + ++ +
76 VFKGGKKCETIIGAVPKATIVQTVEKY
THIO1_CORNE/3-104
LENGTH = 102 COMBINED P-VALUE = 6.02e-49 E-VALUE = 3e-47
DIAGRAM: 3-[3]-4-[1]-[2]-1
[3] [1] [2]
4.6e-05 6.3e-44 8.2
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTLM
+++ ++++ ++ + +++ ++++++++++ +++++ ++++++++ +++++++++++++++++++++++
1 VKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLL
e-11
LFKDGQRVHTQVGYRPKEQLANFLNK
+++++ + +++ +++ ++ ++
76 MFKDGELAANMVGAAPKSRLADWIKAS
THIO_SHIFL/4-107
LENGTH = 104 COMBINED P-VALUE = 2.85e-46 E-VALUE = 1.4e-44
DIAGRAM: 5-[3]-4-[1]-[2]-1
[3] [1] [
4.0e-05 7.7e-35 3
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPT
++ +++ ++++ + +++ ++++++++++++++++ ++ +++ + +++++ ++ ++ +++++ +++
1 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT
2]
.7e-17
LMLFKDGQRVHTQVGYRPKEQLANFLNK
+++++++++ ++ ++++ + +++++++
76 LLLFKNGEVAATKVGALSKGQLKEFLDAN
THIO_RHOSH/4-105
LENGTH = 102 COMBINED P-VALUE = 2.44e-43 E-VALUE = 1.2e-41
DIAGRAM: 3-[3]-4-[1]-[2]-1
[3] [1] [2]
1.8e-09 7.7e-35 9.0
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTLM
++++++ ++ +++++ +++ ++++++ + + ++++ ++++++++++++++++++ ++ ++++ ++ +
1 VPVTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALF
e-10
LFKDGQRVHTQVGYRPKEQLANFLNK
++++++++ +++ ++ +++ +
76 LFKNGQVVSNKVGAAPKAALATWIASA
THIO2_CORNE/4-107
LENGTH = 104 COMBINED P-VALUE = 3.63e-40 E-VALUE = 1.8e-38
DIAGRAM: 5-[3]-4-[1]-[2]-1
[3] [1] [
4.6e-06 3.8e-29 1
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPT
+++++ ++++ + + +++ ++ +++ ++++++++ +++++++++++++ + ++ ++ ++ ++
1 TIVNTTDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPA
2]
.1e-15
LMLFKDGQRVHTQVGYRPKEQLANFLNK
++ +++++++++++++ + + ++ ++++
76 LLMFKDGEVVAQQVGAAPRSKLAAFIDQN
TRXB_MYCLE/350-453
LENGTH = 104 COMBINED P-VALUE = 4.18e-38 E-VALUE = 2.1e-36
DIAGRAM: 5-[3]-4-[1]-[2]-1
[3] [1] [
3.6e-09 1.7e-31 3
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPT
+++++ ++++++ ++ ++++++++++++++++++++++ ++ + +++++ +++ + ++ + ++++
1 VTIEVTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPT
2]
.9e-08
LMLFKDGQRVHTQVGYRPKEQLANFLNK
+++ ++++ +++++ + ++ +
76 MILFQGGQPVKRIVGAKGKAALLRDLSDV
THIO2_ANASP/4-107
LENGTH = 104 COMBINED P-VALUE = 2.82e-20 E-VALUE = 1.4e-18
DIAGRAM: 5-[3]-4-[1]-30
[3] [1]
7.0e-08 2.1e-18
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+++ +++++++ + + +++ +++++ ++ + + +++ ++++++ ++ ++ + ++ + +
1 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPA
TRXH_CHLRE/5-110
LENGTH = 106 COMBINED P-VALUE = 1.59e-18 E-VALUE = 7.9e-17
DIAGRAM: 27-[1]-[2]
[1]
4.5e-21
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRS
+ ++++++++++++ + + ++++++ ++++++ +++ ++
1 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA
[2]
8.6e-05
IPTLMLFKDGQRVHTQVGYRPKEQLANFLNK
++ + +++ + ++++ + + +
76 MPTFHVYKDGVKADDLVGASQDKLKALVAKH
BS2_TRYBB/20-122
LENGTH = 103 COMBINED P-VALUE = 1.46e-13 E-VALUE = 7.3e-12
DIAGRAM: 5-[3]-3-[1]-[2]-1
[3] [1] [2
5.5e-05 4.3e-12 2.
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIPTL
+ +++ ++ ++++ + ++ + ++++ + + + + + ++ ++++++ + ++ ++
1 ESLKLTKENFNETIAKSEIFLVKFYVDTCGYCQMLAPEWEKAANETIDNALMGEVDCHSQPELAANFSIRGYPTI
]
5e-06
MLFKDGQRVHTQVGYRPKEQLANFLNK
+++ +++ + +++++ ++
76 ILFRNGKEAEHYGGARTKDDIIKYIKAN
PDIA3_MOUSE/26-131
LENGTH = 106 COMBINED P-VALUE = 1.24e-12 E-VALUE = 6.2e-11
DIAGRAM: 26-[1]-[2]-1
[1]
6.5e-13
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSI
+ +++++ ++ +++ + + + + +++ + + ++++
1 DVLELTDENFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGY
[2]
5.5e-05
PTLMLFKDGQRVHTQVGYRPKEQLANFLNK
+++ ++ +++ + ++ +++
76 PTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ
PDIA6_MESAU/26-130
LENGTH = 105 COMBINED P-VALUE = 1.11e-10 E-VALUE = 5.5e-09
DIAGRAM: 24-[1]-31
[1]
1.7e-13
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ + + + + + +++ ++ + +++ +++++ +
1 DVIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVDADKHQSLGGQYGVQGFPT
TRXF_PEA/77-179
LENGTH = 103 COMBINED P-VALUE = 1.89e-10 E-VALUE = 9.5e-09
DIAGRAM: 24-[1]-29
[1]
3.0e-13
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
++++++ +++ +++ + + + + ++ +++ ++++ +
1 VTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPT
TRX1_YEAST/2-102
LENGTH = 101 COMBINED P-VALUE = 4.82e-10 E-VALUE = 2.4e-08
DIAGRAM: 72-[2]
[2]
2.2
TLM
+++
1 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLL
e-09
LFKDGQRVHTQVGYRPKEQLANFLNK
++++++ +++++++ + +
76 LFKNGKEVAKVVGANPAAIKQAIAAN
TRXF_SPIOL/85-187
LENGTH = 103 COMBINED P-VALUE = 5.91e-10 E-VALUE = 3e-08
DIAGRAM: 24-[1]-29
[1]
1.8e-12
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
++++++ ++ + +++++ + ++ ++ +++++ +
1 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT
TXLA_SYNE7/39-146
LENGTH = 108 COMBINED P-VALUE = 4.52e-09 E-VALUE = 2.3e-07
DIAGRAM: 25-[1]-3-[2]-1
[1]
7.0e-10
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ + ++ + + + + +++++ ++ + ++++ ++ +
1 SLASLAEQATPYEVAIANDRPMLLEFYADWCTSCQAMAGRIAALKQDYSDRLDFVMLNIDNDKWLPEVLDYNVDG
[2]
2.1e-05
TLMLFKDGQRVHTQVGYRPKEQLANFLNK
+ +++ +++ ++ + ++ ++
76 IPQFVYLNGQGQPQGISIGELPRSVLAANLDAL
THIO_EMENI/7-108
LENGTH = 102 COMBINED P-VALUE = 5.56e-09 E-VALUE = 2.8e-07
DIAGRAM: 24-[1]-28
[1]
7.0e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
++++++++ +++ ++ ++ + ++ + +
1 VPPITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTF
TRXH1_TOBAC/14-118
LENGTH = 105 COMBINED P-VALUE = 7.16e-09 E-VALUE = 3.6e-07
DIAGRAM: 76-[2]
[2]
1.8e-09
TLMLFKDGQRVHTQVGYRPKEQLANFLNK
+ +++++++ ++ +++++ + + ++
76 PTFVFIKDGKEVDRVVGAKKEELQQTIVKH
PDI_MEDSA/378-483
LENGTH = 106 COMBINED P-VALUE = 3.11e-08 E-VALUE = 1.6e-06
DIAGRAM: 24-[1]-2-[2]-1
[1]
1.4e-09
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++++++ + + ++++ +
1 PVKVVVGQTLEDVVFKSGKNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDATANDIPTDTFDVQGY
[2]
6.8e-05
TLMLFKDGQRVHTQVGYRPKEQLANFLNK
++ + + + ++++ +++ +
76 PTLYFRSASGKLSQYDGGRTKEDIIEFIEKN
PDIA6_MEDSA/30-135
LENGTH = 106 COMBINED P-VALUE = 6.04e-08 E-VALUE = 3e-06
DIAGRAM: 23-[1]-33
[1]
1.9e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ + + + + ++ ++ + +
1 DVVVLTEENFEKEVGHDKGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYP
PDIA6_MESAU/161-268
LENGTH = 108 COMBINED P-VALUE = 4.25e-07 E-VALUE = 2.1e-05
DIAGRAM: 5-[3]-8-[1]-30
[3] [1]
1.9e-05 7.5e-07
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIR
++ ++++ ++ ++ + + ++ ++++ ++ ++ ++ ++++
1 DVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIR
SIP
+
76 GFPTIKIFQKGEAPVDYDGGRTRSDIVSRALDL
THIO1_CAEEL/10-111
LENGTH = 102 COMBINED P-VALUE = 4.87e-07 E-VALUE = 2.4e-05
DIAGRAM: 24-[1]-28
[1]
5.7e-07
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ ++++++++ +++ +++ + + +
1 QVKYFQSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTF
ERP60_SCHMA/18-123
LENGTH = 106 COMBINED P-VALUE = 8.11e-07 E-VALUE = 4.1e-05
DIAGRAM: 23-[1]-33
[1]
9.3e-09
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ ++ +++ +++ + +
1 KVLELTKDNFHSELKSIPVALVKFYAPWCGHCKKLAPEFTSAAQIISGKTNDVKLVKVDCTTQESICSEFGVSGY
BS2_TRYBB/350-453
LENGTH = 104 COMBINED P-VALUE = 8.20e-07 E-VALUE = 4.1e-05
DIAGRAM: 23-[1]-31
[1]
9.7e-09
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ ++ + ++ +++ ++ + ++
1 GKTTIVAKTMQKHLTSGKDMLILFFAPWCGHCKNFAPTFDKIAKEFDATDLIVAELDATANYVNSSTFTVTAFPT
TRXH2_TOBAC/7-111
LENGTH = 105 COMBINED P-VALUE = 1.04e-06 E-VALUE = 5.2e-05
DIAGRAM: 76-[2]
[2]
1.3e-08
TLMLFKDGQRVHTQVGYRPKEQLANFLNK
+ ++++ ++ ++++++++ + + +
76 PTFMFLKEGKIVDKVVGAKKDELQQTIAKH
PDIA6_MEDSA/148-254
LENGTH = 107 COMBINED P-VALUE = 1.07e-06 E-VALUE = 5.4e-05
DIAGRAM: 24-[1]-33
[1]
1.2e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ ++++ + ++ + +++ + +
1 HVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGF
THIO_PENCH/3-104
LENGTH = 102 COMBINED P-VALUE = 1.15e-06 E-VALUE = 5.7e-05
DIAGRAM: 24-[1]-28
[1]
6.2e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ ++++++++ +++ ++ + + + + ++
1 VTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTF
PDI_YEAST/377-482
LENGTH = 106 COMBINED P-VALUE = 2.60e-06 E-VALUE = 0.00013
DIAGRAM: 24-[1]-32
[1]
1.2e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+++++ ++ +++ +++ ++ + + + + + +
1 SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYP
TRXH1_ARATH/8-112
LENGTH = 105 COMBINED P-VALUE = 3.59e-06 E-VALUE = 0.00018
DIAGRAM: 76-[2]
[2]
8.3e-07
TLMLFKDGQRVHTQVGYRPKEQLANFLNK
+ ++++ ++ +++++++ + +
76 PTFMFLKEGKILDKVVGAKKDELQSTIAKH
TRX3_YEAST/27-127
LENGTH = 101 COMBINED P-VALUE = 3.70e-06 E-VALUE = 0.00019
DIAGRAM: 23-[1]-28
[1]
3.0e-06
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++++++ + + + + + + +
1 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFV
GSBP_CHICK/369-472
LENGTH = 104 COMBINED P-VALUE = 4.91e-06 E-VALUE = 0.00025
DIAGRAM: 24-[1]-30
[1]
3.5e-09
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ + + + + + ++ + + +
1 PVKVLVGKNYEEVAFDEKKNVFIEFYAPWCGHCKQLAPMWDRLGEAYKDDENIVIAKMESTANEVEAIKVHSFPT
PDIA4_RAT/524-632
LENGTH = 109 COMBINED P-VALUE = 7.23e-06 E-VALUE = 0.00036
DIAGRAM: 24-[1]-35
[1]
8.1e-07
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ + ++ + + ++ + + +
1 PVRVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGQKDLVIAKMDATANDITNDRYKVEGF
PDIA4_CAEEL/148-252
LENGTH = 105 COMBINED P-VALUE = 2.18e-05 E-VALUE = 0.0011
DIAGRAM: 23-[1]-32
[1]
2.8e-07
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ + ++ + +++ +
1 EVVTLTTENFDDFISNNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKVDATIEKDLGTKYGVSGY
PDIA4_RAT/176-280
LENGTH = 105 COMBINED P-VALUE = 2.59e-05 E-VALUE = 0.0013
DIAGRAM: 5-[3]-3-[1]-32
[3] [1]
4.6e-05 1.9e-06
TDATFESETSNSDIL FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ ++++ ++ + ++ + +++++ ++ +++ + + + + + + +
1 VTLTLTKENFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGY
PDI_MEDSA/34-142
LENGTH = 109 COMBINED P-VALUE = 2.76e-05 E-VALUE = 0.0014
DIAGRAM: 23-[1]-36
[1]
9.5e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ + ++ + + + + + +
1 FVLTLDNTNFHDTVKKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDANEEHNKDLASENDVK
THIO_MOUSE/6-104
LENGTH = 99 COMBINED P-VALUE = 5.55e-05 E-VALUE = 0.0028
DIAGRAM: 21-[1]-28
[1]
9.8e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ ++++++++++ + + ++ + + + +
1 ESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFY
PDIA4_CAEEL/37-137
LENGTH = 101 COMBINED P-VALUE = 1.62e-04 E-VALUE = 0.0081
DIAGRAM: 23-[1]-28
[1]
2.5e-06
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ + + + + + + +
1 GVVVLTDKNFDAFLKKNPSVLVKFYAPWCGHCKHLAPEYEKASSKVSIPLAKVDATVETELGKRFEIQGYPTLKF
THIO3_DICDI/4-103
LENGTH = 100 COMBINED P-VALUE = 2.12e-04 E-VALUE = 0.011
DIAGRAM: 22-[1]-28
[1]
9.1e-08
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ + ++++++ ++++ + + ++ + + +
1 VIHVTSNEELDKYLQHQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYF
YIA5_YEAST/33-140
LENGTH = 108 COMBINED P-VALUE = 2.42e-04 E-VALUE = 0.012
DIAGRAM: 22-[1]-36
[1]
1.0e-06
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ + + ++ ++++ + +++ + + + + + +
1 FPEPLNPTNFKEELSKGLHIIDFYSPYCPHCKHLAPVWMETWEEFKEESKTLNITFSQVNCIESADLCGDENIEY
PDIA4_MOUSE/56-159
LENGTH = 104 COMBINED P-VALUE = 2.60e-04 E-VALUE = 0.013
DIAGRAM: 23-[1]-31
[1]
3.7e-07
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ ++ + +++ + + + + +
1 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY
THIO1_DICDI/5-104
LENGTH = 100 COMBINED P-VALUE = 7.65e-04 E-VALUE = 0.038
DIAGRAM: 22-[1]-28
[1]
5.3e-07
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ + ++++++ ++++ + + ++ + +
1 VIHVSSCEELDKHLRDERVVVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHF
PDI_YEAST/33-138
LENGTH = 106 COMBINED P-VALUE = 8.12e-04 E-VALUE = 0.041
DIAGRAM: 23-[1]-33
[1]
4.1e-05
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ ++ ++ +++ +
1 AVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS
PDIA3_RAT/377-483
LENGTH = 107 COMBINED P-VALUE = 1.76e-03 E-VALUE = 0.088
DIAGRAM: 24-[1]-33
[1]
1.3e-06
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ + + ++ + + ++ + +
1 PVKVVVAESFDDIVNAEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVKGFP
PDIA4_CAEEL/500-607
LENGTH = 108 COMBINED P-VALUE = 2.03e-03 E-VALUE = 0.1
DIAGRAM: 24-[1]-34
[1]
2.5e-05
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ ++++ + + + +
1 PVKTVVGSNFDKIVNDESKDVLIEFYAPWCGHCKSFESKYVELAQALKKTQPNVVLAKMDATINDAPSQFAVEGF
PDIA1_CHICK/30-137
LENGTH = 108 COMBINED P-VALUE = 2.20e-03 E-VALUE = 0.11
DIAGRAM: 23-[1]-35
[1]
2.8e-06
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ +++++ ++ +++ +++ + + + +
1 GVLVLRAANFEQALAAHRHLLVEFYAPWCGHCKALAPEYAKAAAQLKAEGSEIRLAKVDATEEAELAQQFGVRGY
ERP60_SCHMA/359-465
LENGTH = 107 COMBINED P-VALUE = 1.76e-02 E-VALUE = 0.88
DIAGRAM: 24-[1]-33
[1]
2.9e-05
FWAPWCGPCRMIAPVLDELAQEYSGKVKIVKMNTDENQSTPAQYGIRSIP
+ + +++ ++ + + ++ ++ + + +
1 AVKKLVALNFDEIVNNEEKDVMVVFHAGWCGHCKNLMPKYEEAASKVKNEPNLVLAAMDATANDVPSPYQVRGFP
GSBP_CHICK/24-131
LENGTH = 108 COMBINED P-VALUE = 2.80e-02 E-VALUE = 1.4
DIAGRAM: 108
Debugging Information
CPU: kodomo-count
Time 0.040002 secs.
mast ./memeout.txt -d ./seed101.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information