RID: 3VBFYR1B01N Job Title:POLG_FMDVO P03305 Capsid protein VP3 (P1C) Program: BLASTP Query: POLG_FMDVO P03305 Capsid protein VP3 (P1C) (Virion protein 3) ID: lcl|Query_526673(amino acid) Length: 220 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73482 462 462 100% 1e-149 100.00 2332 P03305.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12114 392 392 100% 6e-125 82.81 2333 P03308.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12120 389 389 100% 7e-124 83.64 2327 P03311.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12121 389 389 100% 7e-124 83.64 2327 P15072.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12117 388 388 100% 1e-123 83.18 2328 P03310.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12112 385 385 100% 1e-122 81.00 2332 P03306.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12113 384 384 100% 4e-122 81.45 2332 P03307.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12115 384 384 100% 4e-122 81.00 2333 P03309.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73481 384 384 100% 5e-122 81.00 2336 P49303.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Saffold virus NA 434309 140 140 96% 6e-37 34.08 2295 C0MHL9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 138 138 96% 2e-36 32.43 2293 P12296.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 137 137 96% 4e-36 31.98 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 137 137 96% 4e-36 31.98 2292 P17594.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 136 136 96% 1e-35 31.53 2290 P03304.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... cardiovirus A1 NA 2870365 136 136 96% 1e-35 31.53 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12125 135 135 96% 2e-35 33.18 2303 P08544.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo enceph... NA 31702 135 135 96% 2e-35 31.53 901 P32540.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12126 135 135 95% 2e-35 33.94 2301 P13899.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 134 134 98% 4e-35 34.05 2181 Q155Z9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's mu... NA 12127 133 133 96% 1e-34 33.63 2303 P08545.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cosavirus A ... NA 1554483 111 111 97% 5e-27 28.07 2124 B8XTP8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... enterovirus D68 NA 42789 97.4 97.4 94% 4e-22 28.95 2188 Q68T42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 650130 94.7 94.7 97% 4e-21 27.83 2164 P07210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 31915 93.2 93.2 97% 1e-20 27.51 2194 P32537.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Coxsackievir... NA 103902 90.9 90.9 97% 6e-20 28.82 2182 P08291.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231474 90.9 90.9 98% 8e-20 27.31 2184 Q9QL88.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B3 NA 44130 88.6 88.6 98% 4e-19 28.51 2178 Q82081.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231473 87.0 87.0 84% 2e-18 29.21 2187 Q9YLG5.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103907 86.3 86.3 83% 3e-18 29.15 2185 Q03053.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A1B NA 2777147 86.3 86.3 97% 3e-18 26.18 2157 P12916.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A2 NA 12130 86.3 86.3 97% 3e-18 24.78 2150 P04936.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12076 85.9 85.9 83% 4e-18 30.50 2185 P16604.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B14 NA 12131 85.5 85.5 98% 6e-18 27.47 2179 P03303.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Enterovirus A71 NA 39054 85.1 85.1 97% 8e-18 29.96 2193 B9VUU3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12077 84.3 84.3 83% 1e-17 30.00 2185 P13900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 69153 83.2 83.2 97% 3e-17 29.66 2193 Q66478.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A16 NA 31708 83.2 83.2 97% 3e-17 25.22 2153 Q82122.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 103922 82.4 82.4 97% 6e-17 29.66 2193 Q66479.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12068 82.0 82.0 83% 7e-17 27.32 2201 P21404.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 12134 80.5 80.5 97% 3e-16 26.29 2157 P23008.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 11... NA 31705 80.1 80.1 97% 4e-16 25.88 2195 P29813.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Human klasse... NA 655603 80.1 80.1 83% 4e-16 29.38 2370 C6KEF6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 12... NA 103909 80.1 80.1 83% 4e-16 27.67 2193 Q66575.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 1 ... NA 103908 79.7 79.7 84% 4e-16 25.37 2184 O91734.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103904 79.3 79.3 83% 7e-16 28.14 2185 Q66282.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Bovine enter... NA 12065 78.2 78.2 59% 2e-15 33.33 2175 P12915.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12088 77.8 77.8 97% 2e-15 26.64 2206 P03302.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103903 77.4 77.4 83% 3e-15 27.64 2185 P03313.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12082 77.4 77.4 84% 3e-15 27.86 2209 P03301.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103905 77.0 77.0 84% 4e-15 26.87 2183 Q86887.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 6 ... NA 103913 77.0 77.0 97% 4e-15 24.45 2191 Q66474.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103906 76.6 76.6 84% 5e-15 26.96 2183 P08292.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12081 75.9 75.9 84% 9e-15 27.86 2209 P03300.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103915 75.5 75.5 83% 1e-14 27.54 2193 Q66849.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Poliovirus t... NA 12087 75.5 75.5 97% 1e-14 26.64 2206 P06209.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 16... NA 103910 75.5 75.5 84% 1e-14 28.36 862 Q66790.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Salivirus NG-J1 NA 651733 75.1 75.1 83% 2e-14 28.12 2374 C5MSH2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12084 74.3 74.3 84% 3e-14 29.06 2207 P06210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Porcine ente... NA 64141 73.9 73.9 51% 4e-14 35.09 2168 O41174.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 30... NA 176284 73.6 73.6 83% 6e-14 25.38 2194 Q9WN78.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231417 72.8 72.8 97% 1e-13 25.74 2193 Q9QF31.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 69159 72.4 72.4 97% 2e-13 26.09 2193 Q65900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12085 71.2 71.2 84% 4e-13 28.08 2205 P23069.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 36404 68.9 68.9 63% 3e-12 29.05 2214 P36290.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103914 68.2 68.2 83% 5e-12 28.00 2203 Q66577.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12070 67.4 67.4 63% 8e-12 29.53 2206 P22055.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 5 ... NA 176283 67.0 67.0 59% 1e-11 29.71 2196 Q9YLJ1.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Aichi virus ... NA 650132 60.8 60.8 84% 2e-09 25.52 2432 O91464.2 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lb(pro); Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain O1)] Sequence ID: P03305.1 Length: 2332 Range 1: 505 to 724 Score:462 bits(1189), Expect:1e-149, Method:Compositional matrix adjust., Identities:220/220(100%), Positives:220/220(100%), Gaps:0/220(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG Sbjct 505 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR Sbjct 565 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 624 Query 121 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV 180 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV Sbjct 625 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV 684 Query 181 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE Sbjct 685 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 724 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A12)] Sequence ID: P03308.2 Length: 2333 Range 1: 505 to 725 Score:392 bits(1007), Expect:6e-125, Method:Compositional matrix adjust., Identities:183/221(83%), Positives:202/221(91%), Gaps:1/221(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVACSDGYGGLVTTDPKTADPVYGKV+NPPR PGRFTNLLDVAEACPTFL F+ G Sbjct 505 GIFPVACSDGYGGLVTTDPKTADPVYGKVYNPPRTNYPGRFTNLLDVAEACPTFLCFDDG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 PYV T+TD R+LA+FD+SLAAK MSNT+L+G+AQYYTQYSGTINLHFMFTG TD+KAR Sbjct 565 KPYVVTRTDDTRLLAKFDVSLAAKHMSNTYLSGIAQYYTQYSGTINLHFMFTGSTDSKAR 624 Query 121 YMVAYAPPGME-PPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 YMVAY PPG+E PP+TPE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETTN Sbjct 625 YMVAYIPPGVETPPETPEGAAHCIHAEWDTGLNSKFTFSIPYVSAADYAYTASDTAETTN 684 Query 180 VQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 VQGWVC++QITHGKA+GD LVV ASAGKDFELRLP+D R++ Sbjct 685 VQGWVCIYQITHGKAEGDTLVVSASAGKDFELRLPIDPRSQ 725 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C1-Santa Pau)] Sequence ID: P03311.2 Length: 2327 Range 1: 505 to 723 Score:389 bits(999), Expect:7e-124, Method:Compositional matrix adjust., Identities:184/220(84%), Positives:198/220(90%), Gaps:1/220(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVACSDGYG +VTTDPKTADP YGKV+NPPR LPGRFTN LDVAEACPTFL FE Sbjct 505 GIFPVACSDGYGNMVTTDPKTADPAYGKVYNPPRTALPGRFTNYLDVAEACPTFLMFEN- 563 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 VPYV+T+TD R+LA+FD+SLAAK MSNT+LAGLAQYYTQY+GTINLHFMFTGPTDAKAR Sbjct 564 VPYVSTRTDGQRLLAKFDVSLAAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKAR 623 Query 121 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV 180 YMVAY PPGM+ P PE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETT V Sbjct 624 YMVAYVPPGMDAPDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYAYTASHEAETTCV 683 Query 181 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 QGWVC++QITHGKAD DALVV ASAGKDFELRLPVDAR + Sbjct 684 QGWVCVYQITHGKADADALVVSASAGKDFELRLPVDARQQ 723 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus C1] Sequence ID: P15072.2 Length: 2327 Range 1: 505 to 723 Score:389 bits(999), Expect:7e-124, Method:Compositional matrix adjust., Identities:184/220(84%), Positives:198/220(90%), Gaps:1/220(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVACSDGYG +VTTDPKTADP YGKV+NPPR LPGRFTN LDVAEACPTFL FE Sbjct 505 GIFPVACSDGYGNMVTTDPKTADPAYGKVYNPPRTALPGRFTNYLDVAEACPTFLMFEN- 563 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 VPYV+T+TD R+LA+FD+SLAAK MSNT+LAGLAQYYTQY+GTINLHFMFTGPTDAKAR Sbjct 564 VPYVSTRTDGQRLLAKFDVSLAAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKAR 623 Query 121 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV 180 YMVAY PPGM+ P PE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETT V Sbjct 624 YMVAYVPPGMDAPDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYAYTASHEAETTCV 683 Query 181 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 QGWVC++QITHGKAD DALVV ASAGKDFELRLPVDAR + Sbjct 684 QGWVCVYQITHGKADADALVVSASAGKDFELRLPVDARQQ 723 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C3 Indaial)] Sequence ID: P03310.2 Length: 2328 Range 1: 505 to 723 Score:388 bits(997), Expect:1e-123, Method:Compositional matrix adjust., Identities:183/220(83%), Positives:198/220(90%), Gaps:1/220(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVAC+DGYG +VTTDPKTADP YGKV+NPPR LPGRFTN LDVAEACPT L FE Sbjct 505 GIFPVACADGYGNMVTTDPKTADPAYGKVYNPPRTALPGRFTNYLDVAEACPTLLTFEN- 563 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 VPYV+T+TD R+LA+FD+SLAAK MSNT+LAGLAQYYTQY+GTINLHFMFTGPTDAKAR Sbjct 564 VPYVSTRTDGQRLLAKFDVSLAAKHMSNTYLAGLAQYYTQYAGTINLHFMFTGPTDAKAR 623 Query 121 YMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNV 180 YMVAY PPGME P PE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETT+V Sbjct 624 YMVAYVPPGMEAPDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYAYTASSEAETTSV 683 Query 181 QGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 QGWVC++QITHGKAD DALVV ASAGKDFELRLPVDAR + Sbjct 684 QGWVCVYQITHGKADADALVVSASAGKDFELRLPVDARQQ 723 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A10-61)] Sequence ID: P03306.2 Length: 2332 Range 1: 505 to 725 Score:385 bits(990), Expect:1e-122, Method:Compositional matrix adjust., Identities:179/221(81%), Positives:199/221(90%), Gaps:1/221(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVAC+DGYGGLVTTDPKTADPVYGKV+NPP+ PGRFTNLLDVAEACPTFLRF+ G Sbjct 505 GIFPVACADGYGGLVTTDPKTADPVYGKVYNPPKTNYPGRFTNLLDVAEACPTFLRFDDG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 PYV T+ D R+LA+FD+SLAAK MSNT+L+G+AQYYTQYSGTINLHFMFTG TD+KAR Sbjct 565 KPYVVTRADDTRLLAKFDVSLAAKHMSNTYLSGIAQYYTQYSGTINLHFMFTGSTDSKAR 624 Query 121 YMVAYAPPGME-PPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 YMVAY PPG+E PP TPE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETTN Sbjct 625 YMVAYIPPGVETPPDTPEEAAHCIHAEWDTGLNSKFTFSIPYVSAADYAYTASDTAETTN 684 Query 180 VQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 VQGWVC++QITHGKA+ D L+V ASAGKDFELRLP+D R + Sbjct 685 VQGWVCVYQITHGKAENDTLLVSASAGKDFELRLPIDPRTQ 725 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A5)] Sequence ID: P03307.2 Length: 2332 Range 1: 505 to 725 Score:384 bits(986), Expect:4e-122, Method:Compositional matrix adjust., Identities:180/221(81%), Positives:197/221(89%), Gaps:1/221(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVACSDGYGGLVTTDPKTADP YGKV+NPPR PGRFTNLLDVAEACPTFL F+ G Sbjct 505 GIFPVACSDGYGGLVTTDPKTADPAYGKVYNPPRTNYPGRFTNLLDVAEACPTFLCFDDG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 PYV T+TD R+LA+FD+SLAAK MSNT+L+G+AQYY QYSGTINLHFMFTG TD+KAR Sbjct 565 KPYVVTRTDDTRLLAKFDVSLAAKHMSNTYLSGIAQYYAQYSGTINLHFMFTGSTDSKAR 624 Query 121 YMVAYAPPGME-PPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 YMVAY PPG+E PP TPE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AETTN Sbjct 625 YMVAYIPPGVEVPPDTPERAAHCIHAEWDTGLNSKFTFSIPYVSAADYAYTASDTAETTN 684 Query 180 VQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 VQGWVC++QITHGKA+ D LVV ASAGKDFELRLP+D R + Sbjct 685 VQGWVCIYQITHGKAENDTLVVSASAGKDFELRLPIDPRQQ 725 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A24 Cruzeiro)] Sequence ID: P03309.2 Length: 2333 Range 1: 505 to 725 Score:384 bits(986), Expect:4e-122, Method:Compositional matrix adjust., Identities:179/221(81%), Positives:197/221(89%), Gaps:1/221(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GIFPVAC+DGYGGLVTTDPKTADP YGKV+NPPR PGRFTNLLDVAEACPTFL F+ G Sbjct 505 GIFPVACADGYGGLVTTDPKTADPAYGKVYNPPRTNYPGRFTNLLDVAEACPTFLCFDDG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 PYVTT+TD R+LA+FD+SLAAK MSNT+L+G+AQYYTQYSGTINLHFMFTG TD+KAR Sbjct 565 KPYVTTRTDDTRLLAKFDLSLAAKHMSNTYLSGIAQYYTQYSGTINLHFMFTGSTDSKAR 624 Query 121 YMVAYAPPGME-PPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 YMVAY PPG+E PP TPE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS AET N Sbjct 625 YMVAYIPPGVETPPDTPERAAHCIHAEWDTGLNSKFTFSIPYVSAADYAYTASDTAETIN 684 Query 180 VQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 VQGWVC++QITHGKA+ D LVV SAGKDFELRLP+D R + Sbjct 685 VQGWVCIYQITHGKAENDTLVVSVSAGKDFELRLPIDPRQQ 725 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus A22/550/Azerbaijan/65] Sequence ID: P49303.1 Length: 2336 Range 1: 505 to 725 Score:384 bits(985), Expect:5e-122, Method:Compositional matrix adjust., Identities:179/221(81%), Positives:197/221(89%), Gaps:1/221(0%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 GI PVACSDGYGGLVTTDPKTADPVYG V+NPPR PGRFTNLLDVAEACPTFL F+ G Sbjct 505 GIVPVACSDGYGGLVTTDPKTADPVYGMVYNPPRTNYPGRFTNLLDVAEACPTFLCFDDG 564 Query 61 VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKAR 120 PYV T+TD R+LA+FD+SLAAK MSNT+L+G+AQYY QYSGTINLHFMFTG TD+KAR Sbjct 565 KPYVVTRTDEQRLLAKFDLSLAAKHMSNTYLSGIAQYYAQYSGTINLHFMFTGSTDSKAR 624 Query 121 YMVAYAPPGME-PPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 YMVAY PPG+E PP TPE AAHCIHAEWDTGLNSKFTFSIPY+SAADYAYTAS VAETTN Sbjct 625 YMVAYVPPGVETPPDTPEKAAHCIHAEWDTGLNSKFTFSIPYVSAADYAYTASDVAETTN 684 Query 180 VQGWVCLFQITHGKADGDALVVLASAGKDFELRLPVDARAE 220 VQGWVC++QITHGKA+ D LVV SAGKDFELRLP+D R++ Sbjct 685 VQGWVCIYQITHGKAEQDTLVVSVSAGKDFELRLPIDPRSQ 725 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Saffold virus] Sequence ID: C0MHL9.1 Length: 2295 Range 1: 417 to 638 Score:140 bits(352), Expect:6e-37, Method:Compositional matrix adjust., Identities:76/223(34%), Positives:122/223(54%), Gaps:11/223(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL----RFE 58 FPV + G +T P T PVYG + P + + G FT+LL + + PTFL + Sbjct 417 FPVTVREHAGTFFSTTPDTTVPVYGNTISTPFDYMCGEFTDLLSLCK-IPTFLGNLDSNK 475 Query 59 GGVPYVT-TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDA 117 +PY + T + L + ++L+ M+N+ LA +A+ + QY G++N F+FTG Sbjct 476 KRIPYFSATNSTPATPLVTYQVTLSCSCMANSMLAAVARNFNQYRGSLNYLFVFTGSAMT 535 Query 118 KARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAET 177 K +++++Y PPG PKT + A +A WD GLNS + F++P++S Y T+ Sbjct 536 KGKFLISYTPPGAGEPKTLDQAMQATYAIWDLGLNSSYNFTVPFISPTHYRQTSYNTPTI 595 Query 178 TNVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 T+V GW+ ++Q+T G + ++ L S G DF LR+PV Sbjct 596 TSVDGWLTVWQLTPLTYPLGVPNDSHILTLVSGGDDFTLRMPV 638 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 396 to 616 Score:138 bits(348), Expect:2e-36, Method:Compositional matrix adjust., Identities:72/222(32%), Positives:123/222(55%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 396 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQ-IPTFIGNKVPNA 454 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 455 VPYIEASNTAVKTQPLAVYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 514 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + A T Sbjct 515 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQANIT 574 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 NV GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 575 NVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 616 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 396 to 616 Score:137 bits(346), Expect:4e-36, Method:Compositional matrix adjust., Identities:71/222(32%), Positives:122/222(54%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 396 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQ-IPTFIGNKIPNA 454 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 455 VPYIEASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 514 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + T Sbjct 515 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQVNIT 574 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 NV GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 575 NVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 616 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 396 to 616 Score:137 bits(346), Expect:4e-36, Method:Compositional matrix adjust., Identities:71/222(32%), Positives:122/222(54%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 396 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQ-IPTFIGNKIPNA 454 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 455 VPYIEASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 514 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + T Sbjct 515 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQVNIT 574 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 NV GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 575 NVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 616 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 394 to 614 Score:136 bits(343), Expect:1e-35, Method:Compositional matrix adjust., Identities:70/222(32%), Positives:121/222(54%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 394 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPSNYMVGEYKDFLEIAQ-IPTFIGNKIPNA 452 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 453 VPYIEASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 512 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + T Sbjct 513 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQVNIT 572 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 N GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 573 NADGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 614 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [cardiovirus A1] Sequence ID: Q66765.1 Length: 2292 Range 1: 396 to 616 Score:136 bits(342), Expect:1e-35, Method:Compositional matrix adjust., Identities:70/222(32%), Positives:121/222(54%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 396 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPSNYMVGEYKDFLEIAQ-IPTFIGNKIPNA 454 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 455 VPYIEASNTAVKTQPLATYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 514 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + T Sbjct 515 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDQVNIT 574 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 N GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 575 NADGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 616 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)] Sequence ID: P08544.1 Length: 2303 Range 1: 417 to 638 Score:135 bits(341), Expect:2e-35, Method:Compositional matrix adjust., Identities:74/223(33%), Positives:120/223(53%), Gaps:11/223(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL----RFE 58 PV + G +T+P T P+YGK + P + + G F++LL++ + PTFL Sbjct 417 IPVTVREHKGCFYSTNPDTTVPIYGKTISTPSDYMCGEFSDLLELCK-LPTFLGNPNTNN 475 Query 59 GGVPYVT-TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDA 117 PY + T + + + ++L+ M+N+ LA +A+ + QY G++N F+FTG Sbjct 476 KRYPYFSATNSVPATSMVDYQVALSCSCMANSMLAAVARNFNQYRGSLNFLFVFTGAAMV 535 Query 118 KARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAET 177 K ++++AY PPG P T + A +A WD GLNS F F+ P++S Y T+ Sbjct 536 KGKFLIAYTPPGAGKPTTRDQAMQSTYAIWDLGLNSSFNFTAPFISPTHYRQTSYTSPTI 595 Query 178 TNVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 T+V GWV ++++T G ++ L SAG DF LR+P+ Sbjct 596 TSVDGWVTVWKLTPLTYPSGTPTNSDILTLVSAGDDFTLRMPI 638 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Flags: Precursor [Mengo encephalomyocarditis virus (strain 37A)] Sequence ID: P32540.1 Length: 901 Range 1: 396 to 616 Score:135 bits(341), Expect:2e-35, Method:Compositional matrix adjust., Identities:70/222(32%), Positives:122/222(54%), Gaps:10/222(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--RFEGG 60 PV + G +T P + P+YGK P N + G + + L++A+ PTF+ + Sbjct 396 IPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQ-IPTFIGNKVPNA 454 Query 61 VPYVTTKTDSDRV--LAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAK 118 VPY+ + + LA + ++L+ ++NTFLA L++ + QY G++ F+FTG K Sbjct 455 VPYIEASNTAVKTQPLAVYQVTLSCSCLANTFLAALSRNFAQYRGSLVYTFVFTGTAMMK 514 Query 119 ARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETT 178 ++++AY PPG P + + A +A WD GLNS ++F++P++S + + + T Sbjct 515 GKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRMVGTDLVNIT 574 Query 179 NVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 N GWV ++Q+T G ++ + SAGKDF L++P+ Sbjct 575 NADGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPI 616 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN DA)] Sequence ID: P13899.1 Length: 2301 Range 1: 419 to 638 Score:135 bits(340), Expect:2e-35, Method:Compositional matrix adjust., Identities:75/221(34%), Positives:118/221(53%), Gaps:11/221(4%) Query 5 VACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL----RFEGG 60 V + G +T+P T P+YGK + P + + G F++LL++ + PTFL Sbjct 419 VTVREHKGCFYSTNPDTTVPIYGKTISTPNDYMCGEFSDLLELCK-LPTFLGNPNSNNKR 477 Query 61 VPYVT-TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKA 119 PY + T + L + ++L+ M N+ LA +A+ + QY G++N F+FTG K Sbjct 478 YPYFSATNSVPTTSLVDYQVALSCSCMCNSMLAAVARNFNQYRGSLNFLFVFTGAAMVKG 537 Query 120 RYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTN 179 ++++AY PPG P T + A +A WD GLNS F F+ P++S Y T+ A + Sbjct 538 KFLIAYTPPGAGKPTTRDQAMQATYAIWDLGLNSSFVFTAPFISPTHYRQTSYTSATIAS 597 Query 180 VQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 V GWV ++Q+T G ++ L SAG DF LR+P+ Sbjct 598 VDGWVTVWQLTPLTYPSGAPVNSDILTLVSAGDDFTLRMPI 638 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 435 to 665 Score:134 bits(338), Expect:4e-35, Method:Compositional matrix adjust., Identities:79/232(34%), Positives:115/232(49%), Gaps:17/232(7%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGG 60 G P A + ++T P P YG V PP N LPG T+LL +A PT + FE Sbjct 435 GPIPTAPRENSLMFLSTLPDDTVPAYGNVRTPPVNYLPGEITDLLQLAR-IPTLMAFERV 493 Query 61 ----------VPYVTTKTD-SDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHF 109 VPYV T DR L F ++L+ NT + ++ + Y G I + Sbjct 494 PEPVPASDTYVPYVAVPTQFDDRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITL 553 Query 110 MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAY 169 F GP A+ +++++Y+PP P+T A C ++ WD GLNS +TF +PY+S +DY Sbjct 554 TFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIGLNSSWTFVVPYISPSDYRE 613 Query 170 TASGVAETTNVQGWVCLFQITHGKADGD-----ALVVLASAGKDFELRLPVD 216 T + + GW L ++T D ++ ASAG+D+ LRLPVD Sbjct 614 TRAITNSVYSADGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVD 665 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's murine encephalomyeltits virus GDVII] Sequence ID: P08545.2 Length: 2303 Range 1: 417 to 638 Score:133 bits(335), Expect:1e-34, Method:Compositional matrix adjust., Identities:75/223(34%), Positives:118/223(52%), Gaps:11/223(4%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL----RFE 58 PV + G +T+P T P+YGK + P + + G F++LL++ + PTFL Sbjct 417 IPVTVREHQGCFYSTNPDTTVPIYGKTISTPSDYMCGEFSDLLELCK-LPTFLGNPSTDN 475 Query 59 GGVPYVT-TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDA 117 PY + T + L + ++L+ +N+ LA +A+ + QY G++N F+FTG Sbjct 476 KRYPYFSATNSVPATSLVDYQVALSCSCTANSMLAAVARNFNQYRGSLNFLFVFTGAAMV 535 Query 118 KARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAET 177 K ++ +AY PPG P T + A +A WD GLNS F F+ P++S Y T+ Sbjct 536 KGKFRIAYTPPGAGKPTTRDQAMQATYAIWDLGLNSSFNFTAPFISPTHYRQTSYTSPTI 595 Query 178 TNVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 T+V GWV ++Q+T G ++ L SAG DF LR+P+ Sbjct 596 TSVDGWVTVWQLTPLTYPSGTPTHSDILTLVSAGDDFTLRMPI 638 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Cosavirus A isolate Human/Pakistan/0553/-] Sequence ID: B8XTP8.1 Length: 2124 Range 1: 334 to 560 Score:111 bits(278), Expect:5e-27, Method:Compositional matrix adjust., Identities:64/228(28%), Positives:112/228(49%), Gaps:14/228(6%) Query 1 GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRF--- 57 G PV + TT P +P YG PP + +P T+L+++A+ P+F+ Sbjct 334 GPIPVRPFHNFQQFSTTVPLRTEPCYGMTVTPPVDYMPLPITDLVELAKV-PSFVTVANS 392 Query 58 ----EGGVPYVT-TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFT 112 E PY + + T+ R L + + L+ +T +A LA+Y+ Y G++ F+ Sbjct 393 DTTSERSFPYFSVSNTEQGRNLFKSSVVLSDLHYQHTLVANLARYFCNYRGSLQFDFIAA 452 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 + + +++Y PPG P++ + A +A WD GL S F F +P++SA+D+ + S Sbjct 453 TTAMTRGKLLISYTPPGAGEPQSIDQAMMGTYAIWDLGLQSTFNFVVPFISASDFRFNTS 512 Query 173 GVAETTNVQGWVCLFQIT-----HGKADGDALVVLASAGKDFELRLPV 215 V+ N GW+ ++ + +++L SAG DF RLP+ Sbjct 513 SVSNALNSDGWITVWLMNPLTYPPSTPPTQQILMLMSAGSDFSYRLPI 560 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [enterovirus D68] Sequence ID: Q68T42.1 Length: 2188 Range 1: 326 to 547 Score:97.4 bits(241), Expect:4e-22, Method:Compositional matrix adjust., Identities:66/228(29%), Positives:105/228(46%), Gaps:26/228(11%) Query 10 GYGGLVTTDPKTADPVYGKVFNP-PRNQLPGRFTNLLDVAEACPTF-------------L 55 G G +TTD ++ PV FNP P +PG+ N+L++ + L Sbjct 326 GSGQFLTTDDHSSAPVL-PCFNPTPEMHIPGQIRNMLEMIQVESMMEINNTDGANGMERL 384 Query 56 RFEGGVPYVTTKTDSDRVLAQFDMSLAAKQ-MSNTFLAGLAQYYTQYSGTINLHFMFTGP 114 R + ++ + D D++L + + + NT + +++YYT +SG++ + FMF G Sbjct 385 RVD-----ISVQADLDQLLFNIPLDIQLDGPLRNTLVGNISRYYTHWSGSLEMTFMFCGS 439 Query 115 TDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGV 174 A + ++ Y PPG P T E A H WD GL S T IP++S + Y S Sbjct 440 FMATGKLILCYTPPGGSCPTTRETAMLGTHIVWDFGLQSSITLIIPWISGSHYRMFNSDA 499 Query 175 AETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDA 217 T G+V F T+ +D +L+ +A DF LRL D+ Sbjct 500 KSTNANVGYVTCFMQTNLIVPSESSDTCSLIGFIAAKDDFSLRLMRDS 547 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 89 ATCC VR-1199] Sequence ID: P07210.3 Length: 2164 Range 1: 338 to 562 Score:94.7 bits(234), Expect:4e-21, Method:Compositional matrix adjust., Identities:64/230(28%), Positives:110/230(47%), Gaps:21/230(9%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQ-LPGRFTNLLDVAEACPTFLRFEGGV 61 PV + G G +TTD T P F+P + +PG+ NL+++ + T + Sbjct 338 LPVMLTPGSGQFLTTD-DTQSPSAFPYFHPTKEIFIPGQVRNLIEMCQV-DTLIPVNNTQ 395 Query 62 PYVT----------TKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMF 111 V T+ D + + + +A++ ++ T + LA YYT ++G++ FMF Sbjct 396 ENVRSVNMYTVDLRTQVDLAKEVFSIPVDIASQPLATTLIGELASYYTHWTGSLRFSFMF 455 Query 112 TGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTA 171 G + + ++AY PPG+ PK+ A H WD GL S + +P++SA+ + +T Sbjct 456 CGSASSTLKLLIAYTPPGVGKPKSRREAMLGTHLVWDVGLQSTASLVVPWVSASHFRFTT 515 Query 172 SGVAETTNVQGWV-CLFQ----ITHGKADGDALVVLASAGKDFELRLPVD 216 +T + G++ C +Q + D +V + SA KDF LRL D Sbjct 516 ---PDTYSSAGYITCWYQTNFVVPDSTPDNAKMVCMVSACKDFCLRLARD 562 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 70 (strain J670/71)] Sequence ID: P32537.4 Length: 2194 Range 1: 322 to 549 Score:93.2 bits(230), Expect:1e-20, Method:Compositional matrix adjust., Identities:63/229(28%), Positives:105/229(45%), Gaps:16/229(6%) Query 4 PVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTF----LRFEG 59 P G +TTD ++ P + P +PG+ ++L++ + + Sbjct 322 PTCLLPGSNQFLTTDDHSSAPAFPDFSPTPEMHIPGQVHSMLEIVQIESMMEINNVNDAS 381 Query 60 GVPY----VTTKTDSDRVLAQFDMSLAAKQ-MSNTFLAGLAQYYTQYSGTINLHFMFTGP 114 GV ++ ++D D++L + + + + NT L +++YYT +SG++ + FMF G Sbjct 382 GVERLRVQISAQSDMDQLLFNIPLDIQLEGPLRNTLLGNISRYYTHWSGSLEMTFMFCGS 441 Query 115 TDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADY-AYTASG 173 + ++ Y PPG P A H WD GL S T IP++S + Y + Sbjct 442 FMTTGKLIICYTPPGGSSPTDRMQAMLATHVVWDFGLQSSITIIIPWISGSHYRMFNTDA 501 Query 174 VAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDA 217 A NV G+V F T+ G AD +V + +A KDF LRL D+ Sbjct 502 KAINANV-GYVTCFMQTNLVAPVGAADQCYIVGMVAAKKDFNLRLMRDS 549 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P2; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B1 (strain Japan)] Sequence ID: P08291.3 Length: 2182 Range 1: 334 to 559 Score:90.9 bits(224), Expect:6e-20, Method:Compositional matrix adjust., Identities:66/229(29%), Positives:100/229(43%), Gaps:18/229(7%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEA------CPTFLR 56 PV + G +T+D + + P Q+PGR NL+++AE T Sbjct 334 LPVMTTPGSTQFLTSDDFQSPSAMPQFDVTPEMQIPGRVNNLMEIAEVDSVVPVNNTDNN 393 Query 57 FEGGVPY---VTTKTDSDRVLAQFDMSLAAKQMSN-TFLAGLAQYYTQYSGTINLHFMFT 112 G Y V + +D+ R + F + A + N T L + YYT +SG+I L FMF Sbjct 394 VNGLKAYQIPVQSNSDNRRQVFGFPLQPGANNVLNRTLLGEILNYYTHWSGSIKLTFMFC 453 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G A ++++AY+PPG PK A H WD GL S +P++S Y Y Sbjct 454 GSAMATGKFLLAYSPPGAGVPKNRRDAMLGTHVIWDVGLQSSCVLCVPWISQTHYRYV-- 511 Query 173 GVAETTNVQGWVCLFQITHGKADGDA-----LVVLASAGKDFELRLPVD 216 V + G+V + T+ D ++ SA DF +R+ D Sbjct 512 -VEDEYTAAGYVTCWYQTNIIVPADVQSTCDILCFVSACNDFSVRMLKD 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B6 (strain Schmitt)] Sequence ID: Q9QL88.4 Length: 2184 Range 1: 332 to 559 Score:90.9 bits(224), Expect:8e-20, Method:Compositional matrix adjust., Identities:65/238(27%), Positives:105/238(44%), Gaps:32/238(13%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 PV + G +T+D + + P +PG+ NL+++AE + VP Sbjct 332 LPVMTTPGSTQFLTSDDFQSPCAMPQFDVTPEMNIPGQVNNLMEIAEV-------DSVVP 384 Query 63 YVTTKT-----DSDRVLAQFDMSL------------AAKQMSNTFLAGLAQYYTQYSGTI 105 T+T D+ R+ Q +M A+ T L + YYT +SG+I Sbjct 385 VNNTETNVNGMDAYRIPVQSNMDTGGQVFGFPLQPGASSVFQRTLLGEILNYYTHWSGSI 444 Query 106 NLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAA 165 L FMF G A ++++AY+PPG PK+ + A H WD GL S IP++S Sbjct 445 KLTFMFCGSAMATGKFLLAYSPPGAGAPKSRKDAMLGTHVIWDVGLQSSCVLCIPWISQT 504 Query 166 DYAYTASGVAETTNVQGWV-CLFQ----ITHGKADGDALVVLASAGKDFELRLPVDAR 218 Y + VA+ G++ C +Q + G +++ SA DF +R+ D + Sbjct 505 HYRFV---VADEYTAGGFITCWYQTNVIVPLGAQSNCSILCFVSACNDFSVRMLRDTK 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B3] Sequence ID: Q82081.4 Length: 2178 Range 1: 333 to 557 Score:88.6 bits(218), Expect:4e-19, Method:Compositional matrix adjust., Identities:65/228(29%), Positives:99/228(43%), Gaps:15/228(6%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 P G G +TTD + + PR +PG+ NLL++ + G Sbjct 333 LPTTTLPGSGQFLTTDDRQSPSALPSYEPTPRIHIPGKVRNLLEIIQVGTLIPMNNTGTN 392 Query 63 YVTTK----TDSDRVLAQF---DMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPT 115 T +DR Q + + T L +AQYYT +SG++ + M+TGP Sbjct 393 DNVTNYLIPLHADRQNEQIFGTKLYIGDGVFKTTLLGEIAQYYTHWSGSLRISLMYTGPA 452 Query 116 DAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVA 175 + A+ ++AY PPG P+ + A H WD GL S +IP+ S + YT Sbjct 453 LSSAKIILAYTPPGTRGPEDRKEAMLGTHVVWDIGLQSTIVMTIPWTSGVQFRYTD---P 509 Query 176 ETTNVQGWV-CLFQ---ITHGKADGDA-LVVLASAGKDFELRLPVDAR 218 +T G++ C +Q I + G L+ SA DF+LRL D + Sbjct 510 DTYTSAGYLSCWYQTSLILPPQTSGQVYLLSFISACPDFKLRLMKDTQ 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B2 (strain Ohio-1)] Sequence ID: Q9YLG5.3 Length: 2187 Range 1: 365 to 562 Score:87.0 bits(214), Expect:2e-18, Method:Compositional matrix adjust., Identities:59/202(29%), Positives:93/202(46%), Gaps:20/202(9%) Query 33 PRNQLPGRFTNLLDVAEACPTF--------LRFEGGVPYVTTKTDSDRVLAQFDMSL--- 81 P +PGR NL+++AE LR + + V + + + F SL Sbjct 365 PEMNIPGRVHNLMEIAEVDSVVPLNNIQDNLR-KMDIYRVQVSSQTSQGAQVFGFSLQPG 423 Query 82 AAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 A+ + T L + YYT +SG++ L F+F G A ++++AY+PPG P + A Sbjct 424 ASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGVPPDRKKAML 483 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITHGKADGDAL-- 199 H WD GL S +P++S Y YT V + G++ + T+ A DAL Sbjct 484 GTHVIWDVGLQSSCVLCVPWISQTHYRYT---VKDEYTDSGYITCWYQTNVIAPADALST 540 Query 200 ---VVLASAGKDFELRLPVDAR 218 + + SA DF +R+ D R Sbjct 541 CYIMCMVSACNDFSVRMLRDTR 562 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B5 (strain Peterborough / 1954/UK/85)] Sequence ID: Q03053.3 Length: 2185 Range 1: 362 to 557 Score:86.3 bits(212), Expect:3e-18, Method:Compositional matrix adjust., Identities:58/199(29%), Positives:91/199(45%), Gaps:18/199(9%) Query 33 PRNQLPGRFTNLLDVAE--ACPTFLRFEGGV--------PYVTTKTDSDRVLAQFDMSLA 82 P +PG+ NL+++AE + EG V P + T+ +V + A Sbjct 362 PEMAIPGQVNNLMEIAEVDSVVPVNNTEGKVSSIEAYQIPVQSNSTNGSQVFGFPLIPGA 421 Query 83 AKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHC 142 + ++ T L + YYT +SG+I L FMF G A ++++AY+PPG P T + A Sbjct 422 SSVLNRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTTRKEAMLG 481 Query 143 IHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---ITHGKADGDA 198 H WD GL S IP++S Y Y V + G++ C +Q + D Sbjct 482 THVIWDVGLQSSCVLCIPWISQTHYRYV---VVDEYTAGGYITCWYQTNIVVPADTQSDC 538 Query 199 -LVVLASAGKDFELRLPVD 216 ++ SA DF +R+ D Sbjct 539 KILCFVSACNDFSVRMLKD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A1B] Sequence ID: P12916.3 Length: 2157 Range 1: 334 to 558 Score:86.3 bits(212), Expect:3e-18, Method:Compositional matrix adjust., Identities:61/233(26%), Positives:112/233(48%), Gaps:27/233(11%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRN-QLPGRFTNLLDVAEACPTFLRFE--- 58 PV + G G +TTD + P ++P + +PG NL+++ + T + Sbjct 334 LPVYITPGSGQFMTTDDMQS-PCALPWYHPTKEISIPGEVKNLIEMCQV-DTLIPVNNVG 391 Query 59 ---GGVPYVTTKTDSDRVLAQ----FDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMF 111 G + T + + +AQ + + ++ ++ T + +A YYT ++G++ FMF Sbjct 392 TNVGNISMYTVQLGNQMDMAQEVFAIKVDITSQPLATTLIGEIASYYTHWTGSLRFSFMF 451 Query 112 TGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTA 171 G + + ++AY PPG++ P T + A H WD GL S + +P++SA+ + TA Sbjct 452 CGTANTTLKLLLAYTPPGIDKPATRKDAMLGTHVVWDVGLQSTISLVVPWVSASHFRLTA 511 Query 172 SGVAETTNVQGWV-CLFQI-------THGKADGDALVVLASAGKDFELRLPVD 216 + + ++ G++ C +Q T AD ++ SA KDF LR+ D Sbjct 512 N---DKYSMAGYITCWYQTNLVVPPNTPQTAD---MLCFVSACKDFCLRMARD 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A2] Sequence ID: P04936.3 Length: 2150 Range 1: 332 to 555 Score:86.3 bits(212), Expect:3e-18, Method:Composition-based stats., Identities:56/226(25%), Positives:105/226(46%), Gaps:14/226(6%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRN-QLPGRFTNLLDVAEA--------CPT 53 PV + G G +TTD P ++P + +PG NL+++ + T Sbjct 332 LPVFITPGSGQFLTTD-DFQSPCALPWYHPTKEISIPGEVKNLVEICQVDSLVPINNTDT 390 Query 54 FLRFEG--GVPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMF 111 ++ E V ++ D++ + +A++ ++ T + ++ Y+T ++G++ FMF Sbjct 391 YINSENMYSVVLQSSINAPDKIFS-IRTDVASQPLATTLIGEISSYFTHWTGSLRFSFMF 449 Query 112 TGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTA 171 G + + ++AY PPG+ P T + A H WD GL S + +P++SA+ Y T+ Sbjct 450 CGTANTTVKLLLAYTPPGIAEPTTRKDAMLGTHVIWDVGLQSTISMVVPWISASHYRNTS 509 Query 172 SGVAETTNVQGWVCLFQITHGKADGDA-LVVLASAGKDFELRLPVD 216 G + + + W + + A L+ S KDF LR+ D Sbjct 510 PGRSTSGYITCWYQTRLVIPPQTPPTARLLCFVSGCKDFCLRMARD 555 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN H/3 '76)] Sequence ID: P16604.3 Length: 2185 Range 1: 362 to 557 Score:85.9 bits(211), Expect:4e-18, Method:Compositional matrix adjust., Identities:61/200(31%), Positives:93/200(46%), Gaps:20/200(10%) Query 33 PRNQLPGRFTNLLDVAE--ACPTFLRFEGGV--------PYVTTKTDSDRVLAQFDMSLA 82 P +PG+ NL+++AE + EG V P + T+ +V F ++ Sbjct 362 PEMDIPGQVNNLMEIAEVDSVVPVNNTEGKVMSIEAYQIPVQSNPTNGSQVFG-FPLTPG 420 Query 83 AKQMSN-TFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 A + N T L + YY +SG+I L FMF G A ++++AY+PPG P T + A Sbjct 421 ANSVLNRTLLGEILNYYAHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTTRKEAML 480 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---ITHGKADGD 197 H WD GL S IP++S Y Y V + G++ C +Q + A D Sbjct 481 GTHVIWDVGLQSSCVLCIPWISQTHYRYV---VMDEYTAGGYITCWYQTNIVVPADAQSD 537 Query 198 A-LVVLASAGKDFELRLPVD 216 ++ ASA DF +R+ D Sbjct 538 CKILCFASACNDFSVRMLKD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B14] Sequence ID: P03303.3 Length: 2179 Range 1: 333 to 557 Score:85.5 bits(210), Expect:6e-18, Method:Compositional matrix adjust., Identities:64/233(27%), Positives:100/233(42%), Gaps:25/233(10%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 P G G +TTD + + PR +PG+ NLL++ + T + Sbjct 333 LPTTTLPGSGQFLTTDDRQSPSALPNYEPTPRIHIPGKVHNLLEIIQV-DTLIPMNN--- 388 Query 63 YVTTKTDSDRVLAQFDMSLAAKQM------------SNTFLAGLAQYYTQYSGTINLHFM 110 TK + + L + + +Q+ T L + QYYT +SG++ M Sbjct 389 -THTKDEVNSYLIPLNANRQNEQVFGTNLFIGDGVFKTTLLGEIVQYYTHWSGSLRFSLM 447 Query 111 FTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYT 170 +TGP + A+ ++AY PPG P+ A H WD GL S +IP+ S + YT Sbjct 448 YTGPALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIGLQSTIVMTIPWTSGVQFRYT 507 Query 171 ASGVAETTNVQGWV-CLFQ---ITHGKADGDA-LVVLASAGKDFELRLPVDAR 218 +T G++ C +Q I + G L+ SA DF+LRL D + Sbjct 508 D---PDTYTSAGFLSCWYQTSLILPPETTGQVYLLSFISACPDFKLRLMKDTQ 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Enterovirus A71] Sequence ID: B9VUU3.1 Length: 2193 Range 1: 325 to 555 Score:85.1 bits(209), Expect:8e-18, Method:Compositional matrix adjust., Identities:71/237(30%), Positives:103/237(43%), Gaps:28/237(11%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 FP G +TTD + P+ P +PG NLL++ + T L V Sbjct 325 FPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQV-ETILE----VN 379 Query 63 YVTTKTDSDRVLAQFDMSLAAKQ----------------MSNTFLAGLAQYYTQYSGTIN 106 V T S +F +S A + +T L L YYTQ+SG++ Sbjct 380 NVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRNGPWQSTLLGQLCGYYTQWSGSLE 439 Query 107 LHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAAD 166 + FMFTG A + ++AY PPG PK A H WD GL S T IP++S Sbjct 440 VTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTH 499 Query 167 Y-AYTASGVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDA 217 Y A+ GV + G V ++ T+ G + ++ LA+A K+F ++L DA Sbjct 500 YRAHARDGVFDYYTT-GLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMKLCKDA 555 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN UKG/27/72)] Sequence ID: P13900.3 Length: 2185 Range 1: 362 to 557 Score:84.3 bits(207), Expect:1e-17, Method:Compositional matrix adjust., Identities:60/200(30%), Positives:92/200(46%), Gaps:20/200(10%) Query 33 PRNQLPGRFTNLLDVAE--ACPTFLRFEGGV--------PYVTTKTDSDRVLAQFDMSLA 82 P +PG+ NL+++AE + EG V P + T+ +V F ++ Sbjct 362 PEMDIPGQVNNLMEIAEVDSVVPVNNTEGKVMSIEAYQIPVQSNPTNGSQVFG-FPLTPG 420 Query 83 AKQMSN-TFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 A + N T L + YY +SG+I L FMF G A ++++AY+PPG P T + A Sbjct 421 ANSVLNRTLLGEILNYYAHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTTRKEAML 480 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---ITHGKADGD 197 H WD GL S IP++S Y Y V + G++ C +Q + A D Sbjct 481 GTHVIWDVGLQSSCVLCIPWISQTHYRYV---VMDEYTAGGYITCWYQTNIVVPADAQSD 537 Query 198 A-LVVLASAGKDFELRLPVD 216 ++ SA DF +R+ D Sbjct 538 CKILCFVSACNDFSVRMLKD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain BRCR)] Sequence ID: Q66478.3 Length: 2193 Range 1: 325 to 554 Score:83.2 bits(204), Expect:3e-17, Method:Compositional matrix adjust., Identities:70/236(30%), Positives:102/236(43%), Gaps:28/236(11%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 FP G +TTD + P+ P +PG NLL++ + T L V Sbjct 325 FPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQV-ETILE----VN 379 Query 63 YVTTKTDSDRVLAQFDMSLAAKQ----------------MSNTFLAGLAQYYTQYSGTIN 106 V T S +F +S A + +T L L YYTQ+SG++ Sbjct 380 NVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRDGPWQSTMLGQLCGYYTQWSGSLE 439 Query 107 LHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAAD 166 + FMFTG A + ++AY PPG PK A H WD GL S T IP++S Sbjct 440 VTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTH 499 Query 167 Y-AYTASGVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVD 216 Y A+ GV + G V ++ T+ G + ++ LA+A K+F ++L D Sbjct 500 YRAHARDGVFDYYTT-GLVSIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMKLCKD 554 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A16] Sequence ID: Q82122.4 Length: 2153 Range 1: 332 to 556 Score:83.2 bits(204), Expect:3e-17, Method:Compositional matrix adjust., Identities:58/230(25%), Positives:107/230(46%), Gaps:21/230(9%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQ-LPGRFTNLLDVAEACPTFLRFE--- 58 PV + G G +TTD + P ++P + +PG NL+++ + T + Sbjct 332 LPVYVTPGSGQFMTTDDMQS-PCALPWYHPTKEIFIPGEVKNLIEMCQV-DTLIPINSTQ 389 Query 59 ---GGVPYVTTKTDSDRVLAQ----FDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMF 111 G V T LA+ + +A+ ++ T + +A Y+T ++G++ FMF Sbjct 390 SNIGNVSMYTVTLSPQTKLAEEIFAIKVDIASHPLATTLIGEIASYFTHWTGSLRFSFMF 449 Query 112 TGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTA 171 G + + ++AY PPG+ P++ + A H WD GL S + +P++SA+ Y +T Sbjct 450 CGTANTTLKVLLAYTPPGIGKPRSRKEAMLGTHVVWDVGLQSTVSLVVPWISASQYRFTT 509 Query 172 SGVAETTNVQGWV-CLFQ----ITHGKADGDALVVLASAGKDFELRLPVD 216 +T + G++ C +Q + + ++ S KDF LR+ D Sbjct 510 ---PDTYSSAGYITCWYQTNFVVPPNTPNTAEMLCFVSGCKDFCLRMARD 556 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain 7423/MS/87)] Sequence ID: Q66479.3 Length: 2193 Range 1: 325 to 554 Score:82.4 bits(202), Expect:6e-17, Method:Compositional matrix adjust., Identities:70/236(30%), Positives:102/236(43%), Gaps:28/236(11%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 FP G +TTD + P+ P +PG NLL++ + T L V Sbjct 325 FPTELKPGTNQFLTTDDGVSAPILPNFHPTPCIHIPGEVRNLLELCQV-ETILE----VN 379 Query 63 YVTTKTDSDRVLAQFDMSLAAKQ----------------MSNTFLAGLAQYYTQYSGTIN 106 V T S +F +S A + +T L L YYTQ+SG++ Sbjct 380 NVPTNATSLMERLRFPVSAQAGKGELCAVFRADPGRDGPWQSTMLGQLCGYYTQWSGSLE 439 Query 107 LHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAAD 166 + FMFTG A + ++AY PPG PK A H WD GL S T IP++S Sbjct 440 VTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTH 499 Query 167 Y-AYTASGVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVD 216 Y A+ GV + G V ++ T+ G + ++ LA+A K+F ++L D Sbjct 500 YRAHARDGVFDYYTT-GLVSIWYQTNYVVPIGAPNTAYILALAAAQKNFTMKLCKD 554 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A9 (strain Griggs)] Sequence ID: P21404.4 Length: 2201 Range 1: 362 to 557 Score:82.0 bits(201), Expect:7e-17, Method:Compositional matrix adjust., Identities:56/205(27%), Positives:90/205(43%), Gaps:30/205(14%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRV------------LAQ--FD 78 P +PG NL+++AE + VP + +D++ L Q F Sbjct 362 PSMNIPGEVKNLMEIAEV-------DSVVPVNNVQDTTDQMEMFRIPVTINAPLQQQVFG 414 Query 79 MSLAA---KQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKT 135 + L +T L + YY +SG++ L F+F G A ++++AY+PPG PPKT Sbjct 415 LRLQPGLDSVFKHTLLGEILNYYAHWSGSMKLTFVFCGSAMATGKFLIAYSPPGANPPKT 474 Query 136 PEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQ----ITH 191 + A H WD GL S +P++S Y E T+ C +Q + Sbjct 475 RKDAMLGTHIIWDIGLQSSCVLCVPWISQTHYRLVQQD--EYTSAGYVTCWYQTGMIVPP 532 Query 192 GKADGDALVVLASAGKDFELRLPVD 216 G + +++ ASA DF +R+ D Sbjct 533 GTPNSSSIMCFASACNDFSVRMLRD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 1A] Sequence ID: P23008.3 Length: 2157 Range 1: 334 to 558 Score:80.5 bits(197), Expect:3e-16, Method:Compositional matrix adjust., Identities:61/232(26%), Positives:108/232(46%), Gaps:25/232(10%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRN-QLPGRFTNLLDVAEA-----CPTFLR 56 PV + G G +TTD + P ++P + +PG NL+++ + Sbjct 334 LPVYITPGSGQFMTTDDMQS-PCALPWYHPTKEISIPGEVKNLIEMCQVDTLIPVNNVGN 392 Query 57 FEGGVPYVTTKTDSDRVLAQ----FDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFT 112 G V T + + +AQ + + ++ ++ T + +A YYT ++G++ FMF Sbjct 393 NVGNVSMYTVQLGNQTGMAQKVFSIKVDITSQPLATTLIGEIASYYTHWTGSLRFSFMFC 452 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G + + ++AY PPG++ P T + A H WD GL S + +P++SA+ + TA Sbjct 453 GTANTTLKLLLAYTPPGIDEPTTRKDAMLGTHVVWDVGLQSTISLVVPWVSASHFRLTAD 512 Query 173 GVAETTNVQGWV-CLFQI-------THGKADGDALVVLASAGKDFELRLPVD 216 ++ G++ C +Q T AD ++ SA KDF LR+ D Sbjct 513 N---KYSMAGYITCWYQTNLVVPPSTPQTAD---MLCFVSACKDFCLRMARD 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 11 (strain Gregory)] Sequence ID: P29813.4 Length: 2195 Range 1: 333 to 558 Score:80.1 bits(196), Expect:4e-16, Method:Compositional matrix adjust., Identities:59/228(26%), Positives:93/228(40%), Gaps:16/228(7%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAE--ACPTFLRFEGG 60 PV + G +T+D + + P +PG NL+++AE + EG Sbjct 333 LPVMNTPGSNQFLTSDDFQSPSAMPQFDVTPELNIPGEVQNLMEIAEVDSVVPVNNVEGK 392 Query 61 --------VPYVTTKTDSDRVLAQFDMSLAAKQMSNTFLAGLAQYYTQYSGTINLHFMFT 112 +P + SD+V +T L + Y+ +SG+I L F+F Sbjct 393 LDTMEVYRIPVQSGNHQSDQVFGFQVQPGLDSVFKHTLLGEILNYFAHWSGSIKLTFVFC 452 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G A ++++AYAPPG PK + A H WD GL S +P++S Y Sbjct 453 GSAMATGKFLLAYAPPGANAPKNRKDAMLGTHIIWDVGLQSSCVLCVPWISQTHYRLVQQ 512 Query 173 GVAETTNVQGWVCLFQ----ITHGKADGDALVVLASAGKDFELRLPVD 216 E T+ C +Q + G +++ SA DF +RL D Sbjct 513 D--EYTSAGNVTCWYQTGIVVPAGTPTSCSIMCFVSACNDFSVRLLKD 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human klassevirus 1] Sequence ID: C6KEF6.1 Length: 2370 Range 1: 511 to 694 Score:80.1 bits(196), Expect:4e-16, Method:Compositional matrix adjust., Identities:57/194(29%), Positives:93/194(47%), Gaps:21/194(10%) Query 32 PPRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRVLAQ--FDMSLAAKQMSNT 89 PPR+ LPGR N L+ A +E +P+ D++++ +LA Q + Sbjct 511 PPRDYLPGRVRNWLEYAARH----SWERNLPWTAADEVGDQLVSYPIQPETLANTQTNTA 566 Query 90 FLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDT 149 F+ L ++Q+ G++ + +FTGP R ++AY PP PP T E A + + WD Sbjct 567 FVLSL---FSQWRGSLQISLIFTGPAQCYGRLLLAYTPPSANPPTTIEEANNGTYDVWDV 623 Query 150 GLNSKFTFSIPYLSAADYAY----TASGVAETTNVQGWVCLF----QITHGKADGDALV- 200 +S +TF+IP+ S A + T+SG+ G+ +F +T G + A V Sbjct 624 NGDSTYTFTIPFCSQAYWKTVDIGTSSGLVSN---NGYFTIFVMNPLVTPGPSPPSATVA 680 Query 201 VLASAGKDFELRLP 214 DF++RLP Sbjct 681 AFLHVADDFDVRLP 694 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 12 (strain Travis)] Sequence ID: Q66575.4 Length: 2193 Range 1: 362 to 557 Score:80.1 bits(196), Expect:4e-16, Method:Compositional matrix adjust., Identities:57/206(28%), Positives:92/206(44%), Gaps:32/206(15%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRVLAQFDMSLAA-KQMS---- 87 P ++PG NL+++AE + VP V DS + + + ++ Q+S Sbjct 362 PELRIPGEVKNLMEIAEV-------DSVVP-VNNTQDSVYNMDVYKIPVSGGNQLSTQVF 413 Query 88 -------------NTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPK 134 T L + YY +SG++ L F+F G A A++++AY+PPG +PPK Sbjct 414 GFQMQPGLNSVFKRTLLGEILNYYAHWSGSVKLTFVFCGSAMALAKFLLAYSPPGADPPK 473 Query 135 TPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQ----IT 190 + + A H WD GL S +P++S Y E T+ C +Q + Sbjct 474 SRKEAMLGTHVIWDIGLQSSCVLCVPWISQTHYRLVQQD--EYTSAGYVTCWYQTSLVVP 531 Query 191 HGKADGDALVVLASAGKDFELRLPVD 216 G ++ LASA DF +R+ D Sbjct 532 PGAPATCGVLCLASACNDFSVRMLRD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 1 (strain Farouk / ATCC VR-1038)] Sequence ID: O91734.4 Length: 2184 Range 1: 362 to 560 Score:79.7 bits(195), Expect:4e-16, Method:Compositional matrix adjust., Identities:51/201(25%), Positives:89/201(44%), Gaps:17/201(8%) Query 33 PRNQLPGRFTNLLDVAE----------ACPTFLRFEGGVPYVTTKTDSDRVLAQFDMSLA 82 P +PG NL+++AE + E ++T T++ + F ++ Sbjct 362 PEMHIPGEVRNLMEIAEVDSVMPINNDSAAKVSSMEAYRVELSTNTNAGTQVFGFQLNPG 421 Query 83 AKQ-MSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 A+ M+ T + + YY +SG+I + F+F G +++++YAPPG PKT + A Sbjct 422 AESVMNRTLMGEILNYYAHWSGSIKITFVFCGSAMTTGKFLLSYAPPGAGAPKTRKDAML 481 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITHGKADGDA--- 198 H WD GL S IP++S Y + TN C +Q + + Sbjct 482 GTHVVWDVGLQSSCVLCIPWISQTHYRFVEKD--PYTNAGFVTCWYQTSVVSPASNQPKC 539 Query 199 -LVVLASAGKDFELRLPVDAR 218 ++ + SA DF +R+ D + Sbjct 540 YMMCMVSACNDFSVRMLRDTK 560 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Woodruff)] Sequence ID: Q66282.3 Length: 2185 Range 1: 364 to 559 Score:79.3 bits(194), Expect:7e-16, Method:Compositional matrix adjust., Identities:56/199(28%), Positives:84/199(42%), Gaps:18/199(9%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGG----------VPYVTTKTDSDRVLAQFDMSLA 82 P ++PG NL+++AE G +P + + +V Sbjct 364 PEMRIPGEVKNLMEIAEVDSVVPVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGY 423 Query 83 AKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHC 142 + S T L + YYT +SG+I L FMF G A ++++AY+PPG P A Sbjct 424 SSVFSRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTKRVDAMLG 483 Query 143 IHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITHGKADGDA---- 198 H WD GL S IP++S Y Y AS + G++ + T+ DA Sbjct 484 THVVWDVGLQSSCVLCIPWISQTHYRYVAS---DEYTAGGFITCWYQTNIVVPADAQSSC 540 Query 199 -LVVLASAGKDFELRLPVD 216 ++ SA DF +RL D Sbjct 541 YIMCFVSACNDFSVRLLKD 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Bovine enterovirus strain VG-5-27] Sequence ID: P12915.3 Length: 2175 Range 1: 353 to 492 Score:78.2 bits(191), Expect:2e-15, Method:Compositional matrix adjust., Identities:47/141(33%), Positives:74/141(52%), Gaps:11/141(7%) Query 37 LPGRFTNLLDVAEACPTFLR------FEGGVPYVTTKTDSDRVLAQ---FDMSLAAKQ-M 86 +PG+ NLL++A+ + L EG YV + D + AQ + L + Sbjct 353 IPGKVNNLLEIAQV-ESILEANNREGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPL 411 Query 87 SNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAE 146 S++ L LA++YTQ+SG++ + MFTG + ++AY PPG + P+ E A H Sbjct 412 SSSLLGTLAKHYTQWSGSVEITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVV 471 Query 147 WDTGLNSKFTFSIPYLSAADY 167 WD GL S T IP++SA+ + Sbjct 472 WDFGLQSSITLVIPWISASHF 492 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)] Sequence ID: P03302.3 Length: 2206 Range 1: 342 to 567 Score:77.8 bits(190), Expect:2e-15, Method:Compositional matrix adjust., Identities:61/229(27%), Positives:101/229(44%), Gaps:18/229(7%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAE---ACPTFL---- 55 PV + G +T+D + + P +PG N++++AE P L Sbjct 342 LPVLNTPGSNQYLTSDNHQSPCAIPEFDVTPPIDIPGEVKNMMELAEIDTMIPLNLESTK 401 Query 56 RFEGGVPYVTTKTDSDRVLAQFDMSLAAK---QMSNTFLAGLAQYYTQYSGTINLHFMFT 112 R + VT +D +SL+ ++S+T L + YYT ++G++ F+F Sbjct 402 RNTMDMYRVTLSDSADLSQPILCLSLSPASDPRLSHTMLGEVLNYYTHWAGSLKFTFLFC 461 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G A + +VAYAPPG +PP + + A H WD GL S T +P++S Y T Sbjct 462 GSMMATGKILVAYAPPGAQPPTSRKEAMLGTHVIWDLGLQSSCTMVVPWISNVTYRQTTQ 521 Query 173 GVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVD 216 ++ G++ +F T +++ SA DF +RL D Sbjct 522 ---DSFTEGGYISMFYQTRIVVPLSTPKSMSMLGFVSACNDFSVRLLRD 567 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Nancy)] Sequence ID: P03313.4 Length: 2185 Range 1: 364 to 559 Score:77.4 bits(189), Expect:3e-15, Method:Compositional matrix adjust., Identities:55/199(28%), Positives:84/199(42%), Gaps:18/199(9%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGG----------VPYVTTKTDSDRVLAQFDMSLA 82 P ++PG NL+++AE G +P + + +V Sbjct 364 PEMRIPGEVKNLMEIAEVDSVVPVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGY 423 Query 83 AKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHC 142 + S T L + YYT +SG+I L FMF G A ++++AY+PPG P A Sbjct 424 SSVFSRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTKRVDAMLG 483 Query 143 IHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITHGKADGDA---- 198 H WD GL S IP++S Y + AS + G++ + T+ DA Sbjct 484 THVIWDVGLQSSCVLCIPWISQTHYRFVAS---DEYTAGGFITCWYQTNIVVPADAQSSC 540 Query 199 -LVVLASAGKDFELRLPVD 216 ++ SA DF +RL D Sbjct 541 YIMCFVSACNDFSVRLLKD 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 strain Sabin] Sequence ID: P03301.3 Length: 2209 Range 1: 373 to 568 Score:77.4 bits(189), Expect:3e-15, Method:Compositional matrix adjust., Identities:56/201(28%), Positives:94/201(46%), Gaps:21/201(10%) Query 32 PPRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTT----------KTDSDRVLAQFDMSL 81 PP + +PG N++++AE T + F+ T K +D + +S Sbjct 373 PPID-IPGEVKNMMELAE-IDTMIPFDLSAKKKNTMEMYRVRLSDKPHTDDPILCLSLSP 430 Query 82 AAK-QMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAA 140 A+ ++S+T L + YYT ++G++ F+F G A + +V+YAPPG +PPK + A Sbjct 431 ASDPRLSHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAM 490 Query 141 HCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITH-----GKAD 195 H WD GL S T +P++S Y T + ++ G++ +F T Sbjct 491 LGTHVIWDIGLQSSCTMVVPWISNTTYRQT---IDDSFTEGGYISVFYQTRIVVPLSTPR 547 Query 196 GDALVVLASAGKDFELRLPVD 216 ++ SA DF +RL D Sbjct 548 EMDILGFVSACNDFSVRLMRD 568 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain E2)] Sequence ID: Q86887.3 Length: 2183 Range 1: 362 to 559 Score:77.0 bits(188), Expect:4e-15, Method:Compositional matrix adjust., Identities:54/201(27%), Positives:89/201(44%), Gaps:18/201(8%) Query 33 PRNQLPGRFTNLLDVAEACPTF------LRFEGGVPYVTTKTDSDRVLAQ-FDMSL---A 82 P +PG+ NL+++AE + Y +D + Q F L A Sbjct 362 PEMNIPGQVRNLMEIAEVDSVVPINNLQANLKTMEAYRVQVRSTDEMGGQIFGFPLQPGA 421 Query 83 AKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHC 142 + + T L + YYT +SG++ L F+F G A ++++AY+PPG P + + A Sbjct 422 SSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGAPDSRKNAMLG 481 Query 143 IHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---ITHGKADGDA 198 H WD GL S +P++S Y Y V + G++ C +Q I +A Sbjct 482 THVIWDVGLQSSCVLCVPWISQTHYRYV---VDDKYTASGFISCWYQTNVIVPAEAQKSC 538 Query 199 LVV-LASAGKDFELRLPVDAR 218 ++ SA DF +R+ D + Sbjct 539 YIMCFVSACNDFSVRMLRDTQ 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 6 strain Charles] Sequence ID: Q66474.3 Length: 2191 Range 1: 332 to 558 Score:77.0 bits(188), Expect:4e-15, Method:Compositional matrix adjust., Identities:56/229(24%), Positives:94/229(41%), Gaps:16/229(6%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEA---------CPT 53 PV + G +T+D + + P +PG NL+++AE Sbjct 332 LPVMSTPGSNQFLTSDDYQSPTAMPQFDVTPEMHIPGEVKNLMEIAEVDSVVPVNNVNEN 391 Query 54 FLRFEGGVPYVTTKTDSDRVLAQFDMSLAAKQ-MSNTFLAGLAQYYTQYSGTINLHFMFT 112 E V + T++ + F + A M T + YY +SG+I L FM+ Sbjct 392 VNSLEAYRIPVHSVTETGAQVFGFTLQPGADSVMERTLHGEILNYYANWSGSIKLTFMYC 451 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G A ++++AY+PPG PK + A H WD GL S+ +P++S Y + + Sbjct 452 GSAMATGKFLLAYSPPGAGVPKNRKEAMLGTHMIWDIGLQSRCVLCVPWISQTHYRFVSK 511 Query 173 GVAETTNVQGWVCLFQ----ITHGKADGDALVVLASAGKDFELRLPVDA 217 T+ C +Q + + ++ SA DF +RL D+ Sbjct 512 D--SYTDAGFITCWYQTSIVVPAEVQNQSVILCFVSACNDFSVRLLRDS 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain JVB / Benschoten / New York/51)] Sequence ID: P08292.4 Length: 2183 Range 1: 362 to 559 Score:76.6 bits(187), Expect:5e-15, Method:Compositional matrix adjust., Identities:55/204(27%), Positives:90/204(44%), Gaps:24/204(11%) Query 33 PRNQLPGRFTNLLDVAEA---------CPTFLRFEGGVPYVTTKTDSDRVLAQ-FDMSL- 81 P +PG+ NL+++AE + E Y +D + Q F L Sbjct 362 PEMNIPGQVRNLMEIAEVDSVVPINNLKANLMTMEA---YRVQVRSTDEMGGQIFGFPLQ 418 Query 82 --AAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAA 139 A+ + T L + YYT +SG++ L F+F G A ++++AY+PPG P + + A Sbjct 419 PGASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGAPDSRKNA 478 Query 140 AHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---ITHGKAD 195 H WD GL S +P++S Y Y V + G++ C +Q I +A Sbjct 479 MLGTHVIWDVGLQSSCVLCVPWISQTHYRYV---VDDKYTASGFISCWYQTNVIVPAEAQ 535 Query 196 GDALVV-LASAGKDFELRLPVDAR 218 ++ SA DF +R+ D + Sbjct 536 KSCYIMCFVSACNDFSVRMLRDTQ 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 Mahoney] Sequence ID: P03300.3 Length: 2209 Range 1: 373 to 568 Score:75.9 bits(185), Expect:9e-15, Method:Compositional matrix adjust., Identities:56/201(28%), Positives:94/201(46%), Gaps:21/201(10%) Query 32 PPRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTT----------KTDSDRVLAQFDMSL 81 PP + +PG N++++AE T + F+ T K +D + +S Sbjct 373 PPID-IPGEVKNMMELAE-IDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSP 430 Query 82 AAK-QMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAA 140 A+ ++S+T L + YYT ++G++ F+F G A + +V+YAPPG +PPK + A Sbjct 431 ASDPRLSHTMLGEILNYYTHWAGSLKFTFLFCGFMMATGKLLVSYAPPGADPPKKRKEAM 490 Query 141 HCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITH-----GKAD 195 H WD GL S T +P++S Y T + ++ G++ +F T Sbjct 491 LGTHVIWDIGLQSSCTMVVPWISNTTYRQT---IDDSFTEGGYISVFYQTRIVVPLSTPR 547 Query 196 GDALVVLASAGKDFELRLPVD 216 ++ SA DF +RL D Sbjct 548 EMDILGFVSACNDFSVRLLRD 568 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Hill] Sequence ID: Q66849.3 Length: 2193 Range 1: 362 to 558 Score:75.5 bits(184), Expect:1e-14, Method:Compositional matrix adjust., Identities:57/207(28%), Positives:87/207(42%), Gaps:33/207(15%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRVLAQFDMSLAAKQMSN---- 88 P +PG+ NL+++AE + GVP T T + A F + + A + + Sbjct 362 PCMDIPGKVHNLMEIAEV-------DIGVPVNNTSTHMEGTDA-FQIKVTAGNVQDKNAI 413 Query 89 ---------------TFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPP 133 T L + YY +SG+I L F+F G A + ++AY+PPG P Sbjct 414 FSFQLNPGNSTVLRRTLLGEILNYYAHWSGSIKLTFLFCGSAMATGKLLLAYSPPGASVP 473 Query 134 KTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQ---IT 190 K A H WD GL S +P++S Y A E T+ C +Q + Sbjct 474 KARRDAMLGTHVIWDVGLQSSCVLCVPWISQTHYRLVAQD--EYTSAGYITCWYQTNIVV 531 Query 191 HGKADGDALVV-LASAGKDFELRLPVD 216 + D +V+ SA DF +R+ D Sbjct 532 PPETPSDCVVLCFVSACNDFSVRMLKD 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strain 23127)] Sequence ID: P06209.3 Length: 2206 Range 1: 342 to 567 Score:75.5 bits(184), Expect:1e-14, Method:Compositional matrix adjust., Identities:61/229(27%), Positives:100/229(43%), Gaps:18/229(7%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTF-LRFEGGV 61 PV + G +T+D + + P +PG N++++AE L E Sbjct 342 LPVLNTPGSNQYLTSDNHQSPCAIPEFDVTPPIDIPGEVKNVMELAEIDTMIPLNLENTK 401 Query 62 P-----YVTTKTDSDRV---LAQFDMSLAAK-QMSNTFLAGLAQYYTQYSGTINLHFMFT 112 Y +DS + + +S AA ++S+T L + YYT ++G++ F+F Sbjct 402 RNTMDMYRVRLSDSANLSGPILCLSLSPAADPRLSHTMLGEVLNYYTHWAGSLKFTFLFC 461 Query 113 GPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTAS 172 G A + +VAYAPPG +PP + + A H WD GL S T +P++S Y T Sbjct 462 GSMMATGKLLVAYAPPGAQPPTSRKEAMLGTHVIWDLGLQSSCTMVVPWISNVTYRQTTQ 521 Query 173 GVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVD 216 ++ G++ +F T ++ SA DF +RL D Sbjct 522 ---DSFTEGGYISMFYQTRIVVPLSTPKAMDMLGFVSACNDFSVRLLRD 567 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1 [Echovirus 16 (strain Harrington)] Sequence ID: Q66790.3 Length: 862 Range 1: 363 to 559 Score:75.5 bits(184), Expect:1e-14, Method:Compositional matrix adjust., Identities:57/201(28%), Positives:87/201(43%), Gaps:20/201(9%) Query 32 PPRNQLPGRFTNLLDVAE--ACPTFLRFEGGVPYV------TTKTDSDRVLAQFDMSL-- 81 PP + +PG NL++VAE + V + + DS R A F L Sbjct 363 PPLD-IPGEVNNLMEVAEVDSVVPVNNLSDNVKTIKAYQIPVSAGDSSRPEAVFKFQLDP 421 Query 82 -AAKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAA 140 + + +T L + YY +SG+I L F+F G A + ++AY+PPG P T + A Sbjct 422 GSGSVLKHTLLGEIINYYAHWSGSIKLTFVFCGSAMATGKLLIAYSPPGASAPATRKDAM 481 Query 141 HCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITHGKADGDA-- 198 H WD GL S +P++S Y T G++ + T+ D Sbjct 482 LGTHIIWDLGLQSSCVLCVPWISQTHYRMVERDEYTTA---GYISCWYQTNIIVPPDTPS 538 Query 199 ---LVVLASAGKDFELRLPVD 216 ++ LASA DF +R+ D Sbjct 539 QCYMLCLASACNDFSVRMLKD 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Salivirus NG-J1] Sequence ID: C5MSH2.2 Length: 2374 Range 1: 514 to 697 Score:75.1 bits(183), Expect:2e-14, Method:Compositional matrix adjust., Identities:54/192(28%), Positives:90/192(46%), Gaps:17/192(8%) Query 32 PPRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRVLAQFDMSLAAKQMSNTFL 91 PPR+ LPGR N L+ A +E + + + D+ L + + A + T Sbjct 514 PPRDYLPGRVHNWLEYAARH----SWERNLTWTSADEVGDQ-LVSYPIQPEALANTQTNT 568 Query 92 AGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGL 151 A + ++Q+ G++ + +FTGP R ++AY PP PP T + A + + WD Sbjct 569 AFVLSLFSQWRGSLQISLIFTGPAQCYGRLLLAYTPPSANPPTTIDEANNGTYDVWDVNG 628 Query 152 NSKFTFSIPYLSAADYAY----TASGVAETTNVQGWVCLF----QITHGKADGDALV-VL 202 +S +TF+IP+ S A + T+SG+ G+ +F +T G + A V Sbjct 629 DSTYTFTIPFCSQAYWKTVDIGTSSGLVSN---NGYFTVFVMNPLVTPGPSPPSATVAAF 685 Query 203 ASAGKDFELRLP 214 DF++RLP Sbjct 686 LHVADDFDVRLP 697 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain Lansing] Sequence ID: P06210.3 Length: 2207 Range 1: 372 to 567 Score:74.3 bits(181), Expect:3e-14, Method:Compositional matrix adjust., Identities:59/203(29%), Positives:95/203(46%), Gaps:25/203(12%) Query 32 PPRNQLPGRFTNLLDVAE---ACPTFL---RFEGGVPYVTTKTD---SDRVLAQFDMSLA 82 PP + +PG N++++AE P L R Y D SD + +S A Sbjct 372 PPID-IPGEVRNMMELAEIDTMIPLNLTNQRKNTMDMYRVELNDAAHSDTPILCLSLSPA 430 Query 83 AK-QMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 + ++++T L + YYT ++G++ F+F G A + +V+YAPPG E PK+ + A Sbjct 431 SDPRLAHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGAEAPKSRKEAML 490 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITH--------GK 193 H WD GL S T +P++S Y T + ++ G++ +F T K Sbjct 491 GTHVIWDIGLQSSCTMVVPWISNTTYRQT---INDSFTEGGYISMFYQTRVVVPLSTPRK 547 Query 194 ADGDALVVLASAGKDFELRLPVD 216 D ++ SA DF +RL D Sbjct 548 MD---ILGFVSACNDFSVRLLRD 567 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Porcine enterovirus 9] Sequence ID: O41174.3 Length: 2168 Range 1: 382 to 490 Score:73.9 bits(180), Expect:4e-14, Method:Compositional matrix adjust., Identities:40/114(35%), Positives:58/114(50%), Gaps:6/114(5%) Query 55 LRFEGGVPYVTTKTDSDRVLAQFDMSLAAKQ-MSNTFLAGLAQYYTQYSGTINLHFMFTG 113 LR E V+T+++ DR L +S + MS T + YYTQ+SG++ + FMFTG Sbjct 382 LRLE-----VSTQSELDRQLFALKVSFTEGEIMSKTLCGVMCSYYTQWSGSLEITFMFTG 436 Query 114 PTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADY 167 + ++AY PPG P + E A H WD GL S T +P++ Y Sbjct 437 SFMTTGKLLLAYTPPGGSAPASREDAMLGTHVIWDFGLQSSITLVVPWICGGYY 490 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 30 (strain Bastianni)] Sequence ID: Q9WN78.3 Length: 2194 Range 1: 362 to 557 Score:73.6 bits(179), Expect:6e-14, Method:Compositional matrix adjust., Identities:50/197(25%), Positives:88/197(44%), Gaps:14/197(7%) Query 33 PRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTT----------KTDSDRVLAQFDMSLA 82 P Q+PG+ NL+++AE + + + +V + +T+S + F + Sbjct 362 PEIQIPGQVRNLMEIAEV-DSVVPVDNTEEHVNSIEAYRIPVRPQTNSGEQVFGFQLQPG 420 Query 83 AKQ-MSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 + +T L + YY +SG++ L FM+ G A ++++AY+PPG P + + A Sbjct 421 YDSVLKHTLLGEILNYYANWSGSMKLTFMYCGAAMATGKFLIAYSPPGAGVPGSRKDAML 480 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAY-TASGVAETTNVQGWVCLFQITHGKA-DGDAL 199 H WD GL S +P++S +Y Y T + + W +T + Sbjct 481 GTHVIWDVGLQSSCVLCVPWISQTNYRYVTRDAYTDAGYITCWYQTSIVTPPDIPTTSTI 540 Query 200 VVLASAGKDFELRLPVD 216 + SA DF +RL D Sbjct 541 LCFVSACNDFSVRLLRD 557 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus A16 (strain Tainan/5079/98)] Sequence ID: Q9QF31.3 Length: 2193 Range 1: 325 to 554 Score:72.8 bits(177), Expect:1e-13, Method:Compositional matrix adjust., Identities:61/237(26%), Positives:95/237(40%), Gaps:30/237(12%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVP 62 P G +TTD + P+ P +PG NLL++ R E + Sbjct 325 IPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEIC-------RVETILE 377 Query 63 YVTTKTDSDRVLAQ--FDMSLAAKQ----------------MSNTFLAGLAQYYTQYSGT 104 KT+ + + F +S+ +K +T L L +YYTQ+SG+ Sbjct 378 VNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGS 437 Query 105 INLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSA 164 + + FMF G A + ++AY PPG P A H WD GL S T +P++S Sbjct 438 LEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISN 497 Query 165 ADYAYTASGVAETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVD 216 Y A G + ++ T+ G +V LA+A +F ++L D Sbjct 498 THYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKD 554 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A16 (strain G-10)] Sequence ID: Q65900.3 Length: 2193 Range 1: 325 to 554 Score:72.4 bits(176), Expect:2e-13, Method:Compositional matrix adjust., Identities:60/230(26%), Positives:92/230(40%), Gaps:16/230(6%) Query 3 FPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTF----LRFE 58 P G +TTD + P+ P +PG NLL++ L+ Sbjct 325 IPTELKPGTNQFLTTDDGVSAPILPGFHPTPAIHIPGEVRNLLEICRVETILEVNNLQSN 384 Query 59 GGVPY------VTTKTDSDRVLAQFDMSLAAKQ-MSNTFLAGLAQYYTQYSGTINLHFMF 111 P V+ ++ + + A F +T L L +YYTQ+SG++ + FMF Sbjct 385 ETTPMQRLCFPVSVQSKTGELCAVFRADPGRNGPWQSTILGQLCRYYTQWSGSLEVTFMF 444 Query 112 TGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADY-AYT 170 G A + ++AY PPG P A H WD GL S T IP++S Y A+ Sbjct 445 AGSFMATGKMLIAYTPPGGGVPADRLTAMLGTHVIWDFGLQSSVTLVIPWISNTHYRAHA 504 Query 171 ASGVAETTNVQGWVCLFQITH----GKADGDALVVLASAGKDFELRLPVD 216 G + +Q + G +V LA+A +F ++L D Sbjct 505 KDGYFDYYTTGTITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKD 554 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain W-2] Sequence ID: P23069.3 Length: 2205 Range 1: 372 to 567 Score:71.2 bits(173), Expect:4e-13, Method:Compositional matrix adjust., Identities:57/203(28%), Positives:95/203(46%), Gaps:25/203(12%) Query 32 PPRNQLPGRFTNLLDVAE---ACPTFL---RFEGGVPYVTTKTD---SDRVLAQFDMSLA 82 PP + +PG N++++AE P L R Y D SD + +S A Sbjct 372 PPID-IPGEVRNMMELAEIDTMIPLNLTSQRKNTMDMYRVELNDAAHSDTPILCLSLSPA 430 Query 83 AK-QMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAH 141 + ++++T L + YYT ++G++ F+F G A + +V+YAPPG + P++ + A Sbjct 431 SDPRLAHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGAKAPESRKEAML 490 Query 142 CIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQITH--------GK 193 H WD GL S T +P++S Y T + ++ G++ +F T K Sbjct 491 GTHVIWDIGLQSSCTMVVPWISNTTYRQT---INDSFTEGGYISMFYQTRVVVPLSTPRK 547 Query 194 ADGDALVVLASAGKDFELRLPVD 216 D ++ SA DF +RL D Sbjct 548 MD---ILGFVSACNDFSVRLLRD 567 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A24 EH24/70] Sequence ID: P36290.3 Length: 2214 Range 1: 422 to 566 Score:68.9 bits(167), Expect:3e-12, Method:Compositional matrix adjust., Identities:43/148(29%), Positives:71/148(47%), Gaps:11/148(7%) Query 77 FDMSLAA---KQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPP 133 F +SL+ K++ T L + YYT ++G++ F+F G A + +++Y+PPG +PP Sbjct 422 FSISLSPASDKRLQYTMLGEILNYYTHWTGSLRFTFLFCGSMMATGKILLSYSPPGAKPP 481 Query 134 KTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWV-CLFQ---- 188 T + A H WD GL S T P++S Y + + G++ C +Q Sbjct 482 TTRKDAMLGTHIIWDLGLQSSCTMLAPWISNTVYRRC---IKDDFTEGGYITCFYQTRIV 538 Query 189 ITHGKADGDALVVLASAGKDFELRLPVD 216 + G ++ SA DF +RL D Sbjct 539 VPSGTPTSMFMLAFVSACPDFSVRLLRD 566 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Barty] Sequence ID: Q66577.3 Length: 2203 Range 1: 362 to 558 Score:68.2 bits(165), Expect:5e-12, Method:Compositional matrix adjust., Identities:56/200(28%), Positives:84/200(42%), Gaps:19/200(9%) Query 33 PRNQLPGRFTNLLDVAEA------CPTFLRFEGGVPY---VTTKTDSDRVLAQFDMSLA- 82 P +PG NL+++AE T EG + VT D+ A F L Sbjct 362 PCMDIPGEVHNLMEIAEVDSVVPVNNTSTHMEGTDAFQIKVTAGNVQDKS-AIFSFQLNP 420 Query 83 --AKQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAA 140 + + T L + YY +SG+I L F+F G A + ++AY+ G PK+ A Sbjct 421 GNSTVLRRTLLGEILNYYAHWSGSIKLTFLFCGSAMATGKLLLAYSHAGASVPKSRRDAM 480 Query 141 HCIHAEWDTGLNSKFTFSIPYLSAADYAYTASGVAETTNVQGWVCLFQ---ITHGKADGD 197 H WD GL S +P++S Y A E T+ C +Q + + D Sbjct 481 LGTHVIWDVGLQSSCVLCVPWISQTHYRLVAQD--EYTSAGYITCWYQTNIVVPPETPSD 538 Query 198 ALVV-LASAGKDFELRLPVD 216 +V+ SA DF +R+ D Sbjct 539 CVVLCFVSACNDFSVRMLKD 558 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A21 Coe] Sequence ID: P22055.3 Length: 2206 Range 1: 373 to 520 Score:67.4 bits(163), Expect:8e-12, Method:Compositional matrix adjust., Identities:44/149(30%), Positives:72/149(48%), Gaps:11/149(7%) Query 33 PRNQLPGRFTNLLDVAEACPTFL---RFEGGVP----YVTTKTDSDRVLAQFDMSLAA-- 83 P +PG N++++AE T + +G V Y D+ F +SL+ Sbjct 373 PPIHIPGEVKNMMELAE-IDTLIPMNAVDGKVNTMEMYQIPLNDNLSKAPIFCLSLSPAS 431 Query 84 -KQMSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHC 142 K++S+T L + YYT ++G+I F+F G A + +++Y+PPG +PP + A Sbjct 432 DKRLSHTMLGEILNYYTHWTGSIRFTFLFCGSMMATGKLLLSYSPPGAKPPTNRKDAMLG 491 Query 143 IHAEWDTGLNSKFTFSIPYLSAADYAYTA 171 H WD GL S + P++S Y A Sbjct 492 THIIWDLGLQSSCSMVAPWISNTVYRRCA 520 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 5 (strain Noyce)] Sequence ID: Q9YLJ1.3 Length: 2196 Range 1: 427 to 559 Score:67.0 bits(162), Expect:1e-11, Method:Compositional matrix adjust., Identities:41/138(30%), Positives:63/138(45%), Gaps:12/138(8%) Query 86 MSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHA 145 ++ T L + YY +SG+I L F+F G A + ++AY+PPG P + + A H Sbjct 427 LNRTLLGEIINYYAHWSGSIKLTFLFCGSAMATGKLLLAYSPPGASVPTSRKDAMLGTHI 486 Query 146 EWDTGLNSKFTFSIPYLSAADY------AYTASGVAETTNVQGWVCLFQITHGKADGDAL 199 WD GL S +P++S Y Y+A+G + W I D + Sbjct 487 IWDLGLQSSCVLCVPWISQTHYRMVQQDEYSAAGY-----ITCWYQTNIIVPPDTPTDCI 541 Query 200 VV-LASAGKDFELRLPVD 216 V+ SA DF +R+ D Sbjct 542 VLCFVSACNDFSVRMLKD 559 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Aichi virus A846/88] Sequence ID: O91464.2 Length: 2432 Range 1: 568 to 754 Score:60.8 bits(146), Expect:2e-09, Method:Compositional matrix adjust., Identities:49/192(26%), Positives:84/192(43%), Gaps:11/192(5%) Query 28 KVFNPPRNQLPGRFTNLLDVAEACPTFLRFEGGVPYVTTKTDSDRVLAQFDMSLAAKQMS 87 + + PP +P + + L+ A P + VP+ ++R L F +S +A + Sbjct 568 RAYYPPNAYIPAQVRDWLEFAHR-PGLM---ATVPWTMADEPAER-LGIFPVSPSAIAGT 622 Query 88 NTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEW 147 ++ + ++Q+ G + H +FTG R +V Y P +PP T + A + W Sbjct 623 GAPISYVISLFSQWRGELAAHLLFTGSAQHYGRLVVCYTPAAPQPPSTMQEAMRGTYTVW 682 Query 148 DTGLNSKFTFSIPYLSAA-----DYAYTASGVAETTNVQGWVCLFQITHGKADGDALV-V 201 D S F+IP++S + D + ++ T V WV + A ALV Sbjct 683 DVNAASTLEFTIPFISNSYWKTVDVNNPDALLSTTGYVSIWVQNPLVGPHTAPASALVQA 742 Query 202 LASAGKDFELRL 213 SAG+ F +RL Sbjct 743 FISAGESFNVRL 754