BLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U82598 U82598 Escherichia coli genomic sequence of minutes 9 to
12. 
         (1596 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE006156 Pasteurella multocida subsp. multocida str. Pm70 sectio...    34   0.18 
AE006211 Pasteurella multocida subsp. multocida str. Pm70 sectio...    32   0.72 
AE006210 Pasteurella multocida subsp. multocida str. Pm70 sectio...    30   2.8  
AE006204 Pasteurella multocida subsp. multocida str. Pm70 sectio...    30   2.8  
AE006182 Pasteurella multocida subsp. multocida str. Pm70 sectio...    30   2.8  
AE006096 Pasteurella multocida subsp. multocida str. Pm70 sectio...    30   2.8  

>AE006156 Pasteurella multocida subsp. multocida str. Pm70 section 123
             of 204 of the complete genome.
          Length = 13495

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1132  gtggaagcggcaattga 1148
             |||||||||||||||||
Sbjct: 12560 gtggaagcggcaattga 12576


>AE006211 Pasteurella multocida subsp. multocida str. Pm70 section 178
            of 204 of the complete genome.
          Length = 10859

 Score = 32.2 bits (16), Expect = 0.72
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 352  ctgctggagcagattc 367
            ||||||||||||||||
Sbjct: 4475 ctgctggagcagattc 4490


>AE006210 Pasteurella multocida subsp. multocida str. Pm70 section 177
             of 204 of the complete genome.
          Length = 13962

 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 876   tgatgtgatcgacag 890
             |||||||||||||||
Sbjct: 11268 tgatgtgatcgacag 11254


>AE006204 Pasteurella multocida subsp. multocida str. Pm70 section 171
            of 204 of the complete genome.
          Length = 13594

 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 1331 gcggcgatattcaca 1345
            |||||||||||||||
Sbjct: 1889 gcggcgatattcaca 1875


>AE006182 Pasteurella multocida subsp. multocida str. Pm70 section 149
            of 204 of the complete genome.
          Length = 11136

 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 1180 ctggaatttgcgcca 1194
            |||||||||||||||
Sbjct: 8676 ctggaatttgcgcca 8662


>AE006096 Pasteurella multocida subsp. multocida str. Pm70 section 63
            of 204 of the complete genome.
          Length = 10591

 Score = 30.2 bits (15), Expect = 2.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 947  aaacagcttctggcg 961
            |||||||||||||||
Sbjct: 7119 aaacagcttctggcg 7133


  Database: pm
    Posted date:  Oct 27, 2009  5:14 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 204
Number of Hits to DB: 33,879
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1596
Length of database: 2,269,587
Length adjustment: 16
Effective length of query: 1580
Effective length of database: 2,266,323
Effective search space: 3580790340
Effective search space used: 3580790340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 15 (30.2 bits)
S2: 15 (30.2 bits)