########################################
# Program: needle
# Rundate: Fri 30 Mar 2012 01:20:52
# Commandline: needle
#    [-asequence] SPSE.fasta
#    [-bsequence] SIAS.fasta
#    [-outfile] alignmentneedle.txt
#    -gapopen 11
#    -gapextend 1
# Align_format: srspair
# Report_file: alignmentneedle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SPSE_BACSU
# 2: SIAS_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 11.0
# Extend_penalty: 1.0
#
# Length: 386
# Identity:     108/386 (28.0%)
# Similarity:   167/386 (43.3%)
# Gaps:          40/386 (10.4%)
# Score: 346.0
# 
#
#=======================================

SPSE_BACSU         1 --MAAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADA     48
                       :.......:.||...|.|||||.|.||.|.||.|..:|..|.|.|||.
SIAS_HUMAN         1 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADC     50

SPSE_BACSU        49 VKFQM----FQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPL     94
                     .|||.    |:.:|...:.|...|.:.||......  :.:|...:....|
SIAS_HUMAN        51 AKFQKSELEFKFNRKALERPYTSKHSWGKTYGEHK--RHLEFSHDQYREL     98

SPSE_BACSU        95 LDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVAR    144
                     ..|..|..:.|.::..||.:.:.|...:...||:.|.:.|:.|.|:..|:
SIAS_HUMAN        99 QRYAEEVGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKTAK    148

SPSE_BACSU       145 LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNL    194
                     ..|||:.|:....:..:.:.::.::.. |.....:.|.:.||..||..||
SIAS_HUMAN       149 KGRPMVISSGMQSMDTMKQVYQIVKPL-NPNFCFLQCTSAYPLQPEDVNL    197

SPSE_BACSU       195 SVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLP    244
                     .||......||:..||:|.| |.......|||.||||::|:|.|:||...
SIAS_HUMAN       198 RVISEYQKLFPDIPIGYSGH-ETGIAISVAAVALGAKVLERHITLDKTWK    246

SPSE_BACSU       245 GADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAI    294
                     |:|||.:|.|.||.|:|..:|             :.|:.|||..|.....
SIAS_HUMAN       247 GSDHSASLEPGELAELVRSVR-------------LVERALGSPTKQLLPC    283

SPSE_BACSU       295 EGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPR-FFELL    343
                     |........:.:.....|.:|...:.|.:.| :.|: |:|..|. .|.|:
SIAS_HUMAN       284 EMACNEKLGKSVVAKVKIPEGTILTMDMLTV-KVGE-PKGYPPEDIFNLV    331

SPSE_BACSU       344 TSGVRAVRDIPADTGIVWDDILLKDSPFHE------    373
                     ...|...        :..||.::::...:.      
SIAS_HUMAN       332 GKKVLVT--------VEEDDTIMEELVDNHGKKIKS    359


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