RID: AE6MECEW016 Job Title:Protein Sequence Program: BLASTP Query: None ID: lcl|Query_30971(amino acid) Length: 923 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1954 1954 100% 0.0 100.00 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1830 1830 100% 0.0 92.21 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1795 1795 100% 0.0 89.83 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1791 1791 100% 0.0 89.72 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1413 1413 99% 0.0 72.20 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1411 1411 99% 0.0 72.20 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1411 1411 99% 0.0 72.10 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1408 1408 99% 0.0 71.99 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1368 1368 100% 0.0 68.61 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1357 1357 100% 0.0 68.94 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1355 1355 100% 0.0 68.61 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1342 1342 100% 0.0 68.29 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1333 1333 100% 0.0 68.54 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1333 1333 100% 0.0 68.54 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1330 1330 100% 0.0 68.65 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1327 1327 100% 0.0 68.22 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1327 1327 100% 0.0 68.47 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1326 1326 100% 0.0 68.36 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1326 1326 100% 0.0 68.36 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1325 1325 100% 0.0 68.22 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1152 1152 99% 0.0 60.82 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1149 1149 99% 0.0 59.89 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1148 1148 99% 0.0 59.89 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1147 1147 99% 0.0 59.68 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1140 1140 99% 0.0 59.52 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1132 1132 99% 0.0 60.95 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1121 1121 98% 0.0 60.57 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1105 1105 99% 0.0 57.90 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1102 1102 99% 0.0 58.44 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 499 499 33% 3e-171 75.57 Q9WQ77.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 451 451 33% 2e-152 69.06 Q9WQ76.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 120 157 61% 2e-27 25.22 P0C6V7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 112 153 60% 3e-25 27.34 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 84.0 134 52% 2e-16 25.50 Q008X6.1 RecName: Full=Genome polyprotein; Contains: RecName:... 37.4 37.4 11% 0.032 25.00 P18478.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 34.3 34.3 16% 0.25 22.99 P18479.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 33.1 33.1 20% 0.56 23.47 Q6XW15.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 32.7 32.7 13% 0.75 25.93 P17765.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 32.0 32.0 14% 1.5 25.50 O56075.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.6 31.6 1% 1.6 64.71 Q02963.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.6 31.6 1% 1.9 64.71 P18247.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.6 31.6 11% 2.1 24.78 Q01500.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.2 31.2 11% 2.2 24.37 Q65399.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.2 31.2 16% 2.8 22.41 O36979.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 31.2 31.2 3% 2.8 45.71 P17766.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 30.4 30.4 16% 4.4 21.26 Q89330.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... 30.4 30.4 12% 4.6 23.21 P36312.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 30.0 30.0 3% 5.0 42.86 P13529.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 30.0 30.0 3% 5.1 42.86 P17767.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 29.3 29.3 10% 8.4 26.96 Q85197.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 29.3 29.3 4% 9.0 41.03 P31999.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 29.3 29.3 4% 9.5 41.03 P89876.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... 29.3 29.3 3% 9.6 42.86 Q84934.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 4378 to 5300 Score:1954 bits(5062), Expect:0.0, Method:Compositional matrix adjust., Identities:923/923(100%), Positives:923/923(100%), Gaps:0/923(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 121 LTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLG 180 LTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLG Sbjct 4498 LTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLG 4557 Query 181 ERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYS 240 ERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYS Sbjct 4558 ERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYS 4617 Query 241 YLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCV 300 YLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCV Sbjct 4618 YLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCV 4677 Query 301 NCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDV 360 NCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDV Sbjct 4678 NCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDV 4737 Query 361 SLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDF 420 SLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDF Sbjct 4738 SLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDF 4797 Query 421 YDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKY 480 YDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKY Sbjct 4798 YDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKY 4857 Query 481 FEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTM 540 FEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTM Sbjct 4858 FEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTM 4917 Query 541 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD 600 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD Sbjct 4918 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD 4977 Query 601 FMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANEC 660 FMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANEC Sbjct 4978 FMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANEC 5037 Query 661 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKE 720 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKE Sbjct 5038 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKE 5097 Query 721 VKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGI 780 VKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGI Sbjct 5098 VKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGI 5157 Query 781 QNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS 840 QNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS Sbjct 5158 QNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS 5217 Query 841 AGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHM 900 AGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHM Sbjct 5218 AGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHM 5277 Query 901 LDSYSVMLCGDNSAKFWEEAFYR 923 LDSYSVMLCGDNSAKFWEEAFYR Sbjct 5278 LDSYSVMLCGDNSAKFWEEAFYR 5300 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 4468 to 5391 Score:1830 bits(4740), Expect:0.0, Method:Compositional matrix adjust., Identities:852/924(92%), Positives:895/924(96%), Gaps:1/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKDSNFL RVRGSIVNARIEPC+SGL+TDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD+GH LDS+FVVKRHTMENYELEK CYDL++DCDAVA HDFFIFDVDKVKTPHIVRQR Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LTEYTMMDLVYALRHFDQN+ EVLK+ILVKYGCCD +YF+NKLWFDFVENP+VI VYHKL Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 GER+RQA+LNTVKFCD MVK+GLVGVLTLDNQDLNGKWYDFGDFVITQPG+GVAIVDSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SYLMPVLSMT+CLAAETHRDCD KPLIEWPL EYD+TDYK+ LFEKYFK WDQ YH NC Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 4767 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 VNCTDDRCVLHCANFNVLF+MT+P T FGPIVRKIFVDGVPFV+SCGYHYKELGLVMNMD Sbjct 4768 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 4827 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 VSLHRHRLSLKELMMYAADPAMHIAS++A DLRT CFSVAALTTGLTFQTVRPGNFN+D Sbjct 4828 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4887 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDFVVSKGFFKEGSSVTL+HFFFAQDG+AAITDY+YY+YNLPTMCDIKQMLFCMEVV++ Sbjct 4888 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 4947 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGCLNASEV+VNNLDKSAGHPFNKFGKARVYYES+SYQEQDELFAMTKRNV+PT Sbjct 4948 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 5007 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRG+TCVIGTTKFYGGW Sbjct 5008 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 5067 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKH TCCT DRFYRLANE Sbjct 5068 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 5127 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGN IVD+ Sbjct 5128 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 5187 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 EVKDMQF+LYVNVYR + PDPKFVD+YYAFLNKHFSMMILSDDGVVCYNSDYA KGYIA Sbjct 5188 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 5247 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTL+IKDGDDGYFLPYPDPSRIL Sbjct 5248 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 5307 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKH+D EYQNVFWVYLQYIEKLYKDLTGH Sbjct 5308 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 5367 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 MLDSYSVMLCGDNSAKFWEE+FYR Sbjct 5368 MLDSYSVMLCGDNSAKFWEESFYR 5391 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 4421 to 5344 Score:1795 bits(4650), Expect:0.0, Method:Compositional matrix adjust., Identities:830/924(90%), Positives:889/924(96%), Gaps:1/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRGS VNAR+EPCSSGL+TDVV+RAFDICN+KA+VAGIGKYYKTNTCRFV+ Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD+GH LDSYF+VKRHTM NYELEK CYDLL+DCDAVA HDFFIFDVDK KTPHIVRQ Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LTEYTMMDLVYALRHFDQN+ EVLK+ILVKYGCC+ +YF+NKLWFDFVENPSVIGVYHKL Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 GER+RQA+LNTVK CDHMVK+GLVGVLTLDNQDLNGKWYDFGDFVITQPG+GVAIVDSYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SYLMPVLSMT+CLAAETH+DCDFNKPLIEWPL EYD+TDYK+ LF KYFKYWDQTYH NC Sbjct 4661 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 4720 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 VNC+DDRC+LHCANFNVLF+M +P T FGPIVRKIFVDGVPF+VSCGYHYKELGLVMNMD Sbjct 4721 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4780 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 ++HRHRL+LKELMMYAADPAMHIAS++A DLRT CFSVAALTTGLTFQTVRPGNFN+D Sbjct 4781 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4840 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDFVVS+GFFKEGSSVTLKHFFFAQDG+AAITDY+YY+YNLPTM DIKQMLFCMEVV+K Sbjct 4841 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4900 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YF+IYDGGCLNASEV+VNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFA+TKRNV+PT Sbjct 4901 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4960 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW Sbjct 4961 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5020 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 DFMLKTLYKDV++PHLMGWDYPKCDRAMPNMCRI ASLILARKH TCCT DRFYRLANE Sbjct 5021 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5080 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALM ANGN I+D+ Sbjct 5081 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5140 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 E+KDMQFDLY+NVYR PDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGY+A Sbjct 5141 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5200 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 IQNFKETLYYQNNVFMSEAKCWVET+L+KGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL Sbjct 5201 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5260 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 SAGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH+D EYQNVFWVYLQYIEKLYKDLTGH Sbjct 5261 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5320 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 MLDSYSVMLCGD+SAKFWEE FYR Sbjct 5321 MLDSYSVMLCGDDSAKFWEEGFYR 5344 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 4428 to 5351 Score:1791 bits(4638), Expect:0.0, Method:Compositional matrix adjust., Identities:829/924(90%), Positives:888/924(96%), Gaps:1/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRGS VNAR+EPCSSGL+TDVV+RAFDICN+KA+VAGIGKYYKTNTCRFV+ Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD+GH LDSYF+VKRHTM NYELEK CYDLL+DCDAVA HDFFIFDVDK KTPHIVRQ Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LTEYTMMDLVYALRHFDQN+ EVLK+ILVKYGCC+ +YF+NKLWFDFVENPSVIGVYHKL Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 GER+RQA+LNTVK CDHMVK+GLVGVLTLDNQDLNGKWYDFGDFVITQPG+GVAIVDSYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SYLMPVLSMT+CLAAETH+DCDFNKPLIEW L EYD+TDYK+ LF KYFK+WDQTYH NC Sbjct 4668 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNC 4727 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 VNC DDRC+LHCANFNVLF+M +P T FGPIVRKIFVDGVPF+VSCGYHYKELGLVMNMD Sbjct 4728 VNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4787 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V++HRHRL+LKELMMYAADPAMHIAS++A DLRT CFSVAALTTGLTFQTVRPGNFN+D Sbjct 4788 VNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4847 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDFVVS+GFFKEGSSVTLKHFFFAQDG+AAITDY+YY+YNLPTM DIKQMLFCMEVV+K Sbjct 4848 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4907 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YF+IYDGGCLNASEV+VNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFA+TKRNV+PT Sbjct 4908 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4967 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW Sbjct 4968 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5027 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 DFMLKTLYKDV++PHLMGWDYPKCDRAMPNMCRI ASLILARKH TCCT DRFYRLANE Sbjct 5028 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5087 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALM ANGN I+D+ Sbjct 5088 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5147 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 E+KDMQFDLY+NVYR PDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGY+A Sbjct 5148 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5207 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 IQNFKETLYYQNNVFMSEAKCWVET+L+KGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL Sbjct 5208 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5267 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 SAGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH+D EYQNVFWVYLQYIEKLYKDLTGH Sbjct 5268 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5327 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 MLDSYSVMLCGD+SAKFWEE FYR Sbjct 5328 MLDSYSVMLCGDDSAKFWEEGFYR 5351 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 4374 to 5291 Score:1413 bits(3657), Expect:0.0, Method:Compositional matrix adjust., Identities:665/921(72%), Positives:767/921(83%), Gaps:4/921(0%) Query 4 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 63 S FL RV G + AR+ PC +G STDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4374 STFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNEKVAGFAKFLKTNCCRFQEKDE 4430 Query 64 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 123 +G+ LDSYFVVKRHTM NY+ E+ Y+L++DC AVA HDFF F VD PHI RQRLT+ Sbjct 4431 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTK 4490 Query 124 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 182 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY LGER Sbjct 4491 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4550 Query 183 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 242 VRQ++L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4551 VRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4610 Query 243 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 302 MP+L++T LAAE+H D D KPLI+W L +YDFT+ ++ LF++YFKYWDQTYH NC+NC Sbjct 4611 MPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4670 Query 303 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 362 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4671 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4730 Query 363 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 422 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4731 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4790 Query 423 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 482 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4791 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4850 Query 483 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 542 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4851 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4910 Query 543 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 602 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4911 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4970 Query 603 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 662 LKT+Y DV+ PHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC RFYRLANECAQ Sbjct 4971 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQ 5030 Query 663 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 722 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5031 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5090 Query 723 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 782 ++Q LY +YR+ D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G +A I+N Sbjct 5091 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5150 Query 783 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 842 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5151 FKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5210 Query 843 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 902 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5211 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5270 Query 903 SYSVMLCGDNSAKFWEEAFYR 923 YSVML DN++++WE FY Sbjct 5271 MYSVMLTNDNTSRYWEPEFYE 5291 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 4372 to 5289 Score:1411 bits(3653), Expect:0.0, Method:Compositional matrix adjust., Identities:665/921(72%), Positives:766/921(83%), Gaps:4/921(0%) Query 4 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 63 S FL RV G + AR+ PC +G+STDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4372 STFLNRVCG-VSAARLTPCGTGISTDVVYRAFDI--YNEKVAGFAKFLKTNCCRFQEKDE 4428 Query 64 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 123 +G+ LDSYFVVKRHTM NY+ E+ Y+L++DC AVA HDFF F VD PHI RQRLT+ Sbjct 4429 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTK 4488 Query 124 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 182 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY LGER Sbjct 4489 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4548 Query 183 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 242 VRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4549 VRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4608 Query 243 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 302 MP+L++T LAAE+H D D KPLI+W L +YDFT ++ LF++YFKYWDQTYH NC+NC Sbjct 4609 MPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCINC 4668 Query 303 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 362 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4669 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4728 Query 363 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 422 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4729 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4788 Query 423 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 482 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4789 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4848 Query 483 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 542 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4849 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4908 Query 543 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 602 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4909 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4968 Query 603 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 662 LKT+Y DV+ PHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC RFYRLANECAQ Sbjct 4969 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQ 5028 Query 663 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 722 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5029 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5088 Query 723 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 782 ++Q LY +YR+ D +FV ++YA+L KHFSMMILSDD VVCYNS+YAA+G +A I+N Sbjct 5089 NLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5148 Query 783 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 842 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5149 FKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5208 Query 843 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 902 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5209 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5268 Query 903 SYSVMLCGDNSAKFWEEAFYR 923 YSVML DN++++WE FY Sbjct 5269 MYSVMLTNDNTSRYWEPEFYE 5289 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 4368 to 5285 Score:1411 bits(3652), Expect:0.0, Method:Compositional matrix adjust., Identities:664/921(72%), Positives:768/921(83%), Gaps:4/921(0%) Query 4 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 63 S FL RV G + AR+ PC +G STDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4368 STFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNEKVAGFAKFLKTNCCRFQEKDE 4424 Query 64 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 123 +G+ LDSYFVVKRHTM NY+ E+ Y+L+++C AVA HDFF F VD PHI RQRLT+ Sbjct 4425 EGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLTK 4484 Query 124 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 182 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP V+ VY LGER Sbjct 4485 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGER 4544 Query 183 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 242 VR+A+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4545 VRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4604 Query 243 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 302 MP+L++T LAAE+H D D KPL++W L +YDFT+ ++ LF++YFKYWDQTYH NC+NC Sbjct 4605 MPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4664 Query 303 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 362 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4665 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4724 Query 363 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 422 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4725 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4784 Query 423 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 482 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4785 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4844 Query 483 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 542 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4845 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4904 Query 543 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 602 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4905 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4964 Query 603 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 662 LKT+Y DV++PHLMGWDYPKCDRAMPNM RI ASLILARKH TCC RFYRLANECAQ Sbjct 4965 LKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECAQ 5024 Query 663 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 722 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5025 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5084 Query 723 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 782 ++Q LY +YR+ D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G +A I+N Sbjct 5085 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5144 Query 783 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 842 FK LYYQNNVFMSEAKCW ETDL +GPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5145 FKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5204 Query 843 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 902 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5205 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5264 Query 903 SYSVMLCGDNSAKFWEEAFYR 923 YSVML DN++++WE FY Sbjct 5265 MYSVMLTNDNTSRYWEPEFYE 5285 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 4380 to 5297 Score:1408 bits(3644), Expect:0.0, Method:Compositional matrix adjust., Identities:663/921(72%), Positives:766/921(83%), Gaps:4/921(0%) Query 4 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 63 S FL RV G + AR+ PC +G STDVV+RAFDI Y +VAG K+ KTN CRF E D+ Sbjct 4380 STFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNERVAGFAKFLKTNCCRFQEKDE 4436 Query 64 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 123 +G+ LDSYFVVKRHTM NY+ E+ Y+L+++C AVA HDFF F VD PHI RQRLT+ Sbjct 4437 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTK 4496 Query 124 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 182 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY LGER Sbjct 4497 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4556 Query 183 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 242 VRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4557 VRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4616 Query 243 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 302 MP+L++T LAAE+H D D KPLI+W L +YDFT+ ++ LF++YFKYWDQTYH NC+NC Sbjct 4617 MPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4676 Query 303 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 362 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4677 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4736 Query 363 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 422 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4737 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4796 Query 423 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 482 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4797 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4856 Query 483 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 542 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4857 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQ 4916 Query 543 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 602 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4917 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4976 Query 603 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 662 LKT+Y DV+ PHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC RFYRLANECAQ Sbjct 4977 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQ 5036 Query 663 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 722 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5037 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5096 Query 723 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 782 ++Q LY +YR+ D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G +A I+N Sbjct 5097 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5156 Query 783 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 842 FK YYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5157 FKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5216 Query 843 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 902 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5217 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5276 Query 903 SYSVMLCGDNSAKFWEEAFYR 923 YSVML DN++++WE FY Sbjct 5277 MYSVMLTNDNTSRYWEPEFYE 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 4234 to 5155 Score:1368 bits(3542), Expect:0.0, Method:Compositional matrix adjust., Identities:634/924(69%), Positives:757/924(81%), Gaps:3/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 ++D FL RVRG+ AR+ P SG+ D+V RAFDICN KVAG G + K N CR+ E Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICN--TKVAGFGLHLKNNCCRYQE 4291 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 LD G LDSYFVVKRHT NY LE+ CY+ L+DC VA HDFF F+++ V TPH+ R+R Sbjct 4292 LDADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRER 4351 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM DLVY+LRHFD N+ + LK ILV GCC YF+ K W+D VENP +I VYH L Sbjct 4352 LTKYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNL 4411 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 GE VR+A+L+ VK D MV+ GL+GVLTLDNQDLNG+WYDFGDF+ G+GVA++D+YY Sbjct 4412 GETVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYY 4471 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 S MPV +MT+ LAAE H D DF+KP W + +YD+T +K LF KYFKYWD YH NC Sbjct 4472 SLAMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNC 4531 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V C DDRC+LHCANFN+LF+M +P T FGP+V+KI+VDGVPFVVS GYHY+ELG+VMN D Sbjct 4532 VACADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQD 4591 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 + H RLSL+EL++YAADPAMH+A+SNA D RT C SVAA+TTG+TFQTV+PG FN+D Sbjct 4592 IRQHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNED 4651 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FY+F V GFFKEGS+++ KHFF+AQDGNAAI+DY+YY YNLPTMCDIKQ+LF +EVV+K Sbjct 4652 FYNFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDK 4711 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YF+ YDGGCL AS+VVV N DKSAG PFNKFGKAR+YYES+SY +QDELFA TKRNV+PT Sbjct 4712 YFDCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPT 4771 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQKMLKS+AA RGA+ VIGTTKFYGGW Sbjct 4772 ITQMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGW 4831 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 + ML+TL + V+NPHLMGWDYPKCDRAMPN+ RIFASLILARKH TCC +RFYRLANE Sbjct 4832 NRMLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANE 4891 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE VLCGGG+YVKPGGTSSGD+TTAYANSVFNI QA +AN++ + +GNKI Sbjct 4892 CAQVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTT 4951 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 V+++Q LY+ +YRS + D + V YY +L KHFSMMILSDDGVVCYN+DYA KGY+A Sbjct 4952 YVQELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVAD 5011 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 IQ FKE LY+QNNVFMSE+KCWVE D+ KGPHEFCSQHT+ + + +LPYPDPSRIL Sbjct 5012 IQGFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRIL 5071 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 AGCFVDD++KTDGTLM+ER+VSLAIDAYPLTKH D EYQNVFW YLQYI+KL+++LTGH Sbjct 5072 GAGCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGH 5131 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 +LD+YSVML DN++K+WE FY Sbjct 5132 LLDTYSVMLASDNASKYWEVEFYE 5155 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 4403 to 5320 Score:1357 bits(3511), Expect:0.0, Method:Compositional matrix adjust., Identities:637/924(69%), Positives:759/924(82%), Gaps:7/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ VNAR+ PC+SGL TDV RAFDICN A AGIG YYK N CRF Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCCRFQR 4460 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 D+ G+ LD +FV+KR +E Y EK CY+L ++C VA H+FF FDV+ + PHIVR+ Sbjct 4461 ADEDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKD 4520 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L++YTM+DL YALRHFD+N LK IL+ Y CD +YF+ K W+DFVEN +I VY KL Sbjct 4521 LSKYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKL 4580 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNT KF D +V+AGLVGVLTLDNQDL G+WYDFGDFV T PG GVA+ DSYY Sbjct 4581 GPIFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYY 4640 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L +E N E+ L +YDFTD+K++LF KYFKYW TYH N Sbjct 4641 SYMMPMLTMCHALDSELF----INGTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNT 4696 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 C DDRC++HCANFN+LF+M +PKTCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4697 CECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4756 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4757 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4816 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FY+F++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVVNK Sbjct 4817 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNK 4876 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ A++V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4877 YFEIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPT 4936 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4937 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4996 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVD+P LMGWDYPKCDRAMPN+ RI +SL+LARKH +CC+ DRFYRLANE Sbjct 4997 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANE 5056 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM NG+KI D Sbjct 5057 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5116 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++++Q LY NVYR+ DP FV++YY FLNKHFSMMILSDDGVVCYNS++A+KGYIA Sbjct 5117 SIRELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIAN 5176 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 I F++ LYYQNNVFMSEAKCWVETD++KGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5177 ISAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5236 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQNVF VYL+YI+KLY DL Sbjct 5237 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5296 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E FY+ Sbjct 5297 ILDSYSVILSTCDGQKFTDETFYK 5320 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 4455 to 5372 Score:1355 bits(3506), Expect:0.0, Method:Compositional matrix adjust., Identities:634/924(69%), Positives:760/924(82%), Gaps:7/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL R+RG+ VNAR+ PC+SGL TDV RAFDICN A AGIG YYK N CRF Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCCRFQR 4512 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G+ LD +FVVKR +E Y EK CY+L ++C VA H+FF FDV+ + PHIVR+ Sbjct 4513 VDEDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKD 4572 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L+++TM+DL YALRHFD+N LK IL+ Y C+ +YF+ K W+DFVENP +I VY KL Sbjct 4573 LSKFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKL 4632 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNT KF D +V+AGLVGVLTLDNQDL G+WYDFGDFV T PG GVA+ DSYY Sbjct 4633 GPIFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYY 4692 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L +E N E+ L +YDFTD+K++LF KYFK+W TYH N Sbjct 4693 SYMMPMLTMCHALDSELF----VNGTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNT 4748 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 C DDRC++HCANFN+LF+M +PKTCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4749 CECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4808 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4809 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4868 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FY+F++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVVNK Sbjct 4869 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNK 4928 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIY+GGC+ A++V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4929 YFEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4988 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4989 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 5048 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVD+P LMGWDYPKCDRAMPN+ RI +SL+LARKH +CC+ DRFYRLANE Sbjct 5049 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANE 5108 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM NG+KI D Sbjct 5109 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5168 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++++Q LY NVYR+ DP FV +YY FLNKHFSMMILSDDGVVCYNS++A+KGYIA Sbjct 5169 SIRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIAN 5228 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 I F++ LYYQNNVFMSEAKCWVETD++KGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5229 ISAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5288 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQNVF VYL+YI+KLY DL Sbjct 5289 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5348 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E FY+ Sbjct 5349 ILDSYSVILSTCDGQKFTDETFYK 5372 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 4461 to 5378 Score:1342 bits(3474), Expect:0.0, Method:Compositional matrix adjust., Identities:631/924(68%), Positives:757/924(81%), Gaps:7/924(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ VNAR+ PC+SGL TDV RAFDICN A AGIG YYK N RF Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCFRFQR 4518 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D++G+ LD +FVVKR +E Y EK CY+L +DC VA H+FF FDV+ + PHIVR+ Sbjct 4519 VDEEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKD 4578 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L+++TM+DL YALRHFD+N LK IL+ Y CD +YF+ K W+DFVENP +I VY KL Sbjct 4579 LSKFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKL 4638 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNT F D +V+AGLVGVLTLDNQDL G+WYDFGDFV T P GVA+ DSYY Sbjct 4639 GPIFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYY 4698 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L +E N E+ L +YDFTD+K++LF KYFK+W TYH N Sbjct 4699 SYMMPMLTMCHALDSELF----VNGTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNT 4754 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 C DDRC++HCANFN+LF+M +PKTCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4755 SECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4814 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4815 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4874 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FY+F++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVVNK Sbjct 4875 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNK 4934 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIY+GGC+ A++V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4935 YFEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4994 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4995 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 5054 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVD+P LMGWDYPKCDRAMPN+ RI +SL+LARKH +CC+ DRFYRLANE Sbjct 5055 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANE 5114 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVL E V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM NG+KI D Sbjct 5115 CAQVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5174 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++++Q LY NVYR+ DP FV +YY FLNKHFSM+ILSDDGVVCYNS++A+KGYIA Sbjct 5175 SIRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIAN 5234 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 839 I +F++ LYYQNNVFMSEAKCWVETD++KGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5235 ISDFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5294 Query 840 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 899 AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQNVF VYL+YI+KLY DL Sbjct 5295 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5354 Query 900 MLDSYSVMLCGDNSAKFWEEAFYR 923 +LDS SV+L + KF +E FY+ Sbjct 5355 ILDSISVILSTCDGQKFTDETFYK 5378 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 4370 to 5287 Score:1333 bits(3451), Expect:0.0, Method:Compositional matrix adjust., Identities:634/925(69%), Positives:749/925(80%), Gaps:9/925(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ V+AR+ PC+SGLSTDV RAFDICN A VAGIG + K N CRF Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G LD +FVVKR + Y E CY+ ++DC VA HDFF FDV+ + PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNSEVLKA-ILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM+DL YALRHFD+N +L IL Y C+ +YF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+++ +F D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L E + N + L +YDFTDYK++LF KYFK+W YH N Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V+C DDRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A DLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDF++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALM NGNKI D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++ +Q LY +VYRS D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGYIA Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 838 I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 L AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGN 5262 Query 899 HMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYK 5287 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 4370 to 5287 Score:1333 bits(3450), Expect:0.0, Method:Compositional matrix adjust., Identities:634/925(69%), Positives:749/925(80%), Gaps:9/925(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ V+AR+ PC+SGLSTDV RAFDICN A VAGIG + K N CRF Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G LD +FVVKR + Y E CY+ ++DC VA HDFF FDV+ + PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNSEVLKA-ILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM+DL YALRHFD+N +L IL Y C+ +YF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+++ +F D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L E + N + L +YDFTDYK++LF KYFK+W YH N Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V+C DDRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A DLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDF++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALM NGNKI D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++ +Q LY +VYRS D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGYIA Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 838 I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 L AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGN 5262 Query 899 HMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYK 5287 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 4370 to 5287 Score:1330 bits(3443), Expect:0.0, Method:Compositional matrix adjust., Identities:635/925(69%), Positives:748/925(80%), Gaps:9/925(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ V+AR+ PC+SGLSTDV RAFDI Y A VAGIG + K N CRF Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDI--YNASVAGIGLHLKVNCCRFQR 4427 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G LD +FVVKR + Y E CY+ ++DC VA HDFF FDV+ + PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNSEVLKA-ILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM+DL YALRHFD+N +L IL Y C+ +YF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+++ +F D +V+ GLVGVLTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L E + N + L +YDFTDYK++LF KYFK+W YH N Sbjct 4608 SYIMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V+C DDRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A DLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDFV+SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV K Sbjct 4784 FYDFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH TCC+ DRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANE 5023 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALM NGNKI D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++ +Q LY +VYRS D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGYIA Sbjct 5084 SIRALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 838 I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K DGDD Y LPYP+PSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVY-LPYPNPSRI 5202 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 L AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGN 5262 Query 899 HMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYK 5287 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 4370 to 5287 Score:1327 bits(3435), Expect:0.0, Method:Compositional matrix adjust., Identities:631/925(68%), Positives:748/925(80%), Gaps:9/925(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ V+AR+ PC+SGLSTDV RAFDICN A VAGIG + K N CRF Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G LD +FVVKR + Y E CY+ ++DC VA HDFF FDV+ + PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNSEVLKA-ILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM+DL YALRHFD+N +L IL Y C+ +YF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+++ +F D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L E + N + L +YDFTDYK++LF KYFK+W YH N Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V+C DDRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A DLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDF++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ A++V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4844 YFEIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALM NGNKI D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++ +Q LY +VYRS D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGYIA Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 838 I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K DGDD Y LPYP PSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPVPSRI 5202 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 L AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY +L Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGN 5262 Query 899 HMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYK 5287 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 4428 to 5345 Score:1327 bits(3434), Expect:0.0, Method:Compositional matrix adjust., Identities:634/926(68%), Positives:748/926(80%), Gaps:11/926(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD NFL RVRG+ VNAR+ PC+SGLSTDV RAFDICN AGIG YYK N CRF Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4485 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD G+ LD +FVVKR +E Y EK Y+L + C VA HDFF FD+D + PHIVR+ Sbjct 4486 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 4545 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L++YTM+DL YALRHFD N VL IL +Y C +YF K W+DFVENP +I +Y KL Sbjct 4546 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4605 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNTV F D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4606 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4665 Query 240 SYLMPVLSMTDCLAAETHRDCDF--NKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHA 297 SY+MP+L+M L DC+ N ++ L +YDFTDYK++LF KYFKYW YH Sbjct 4666 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4719 Query 298 NCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMN 357 N V+C +DRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMN Sbjct 4720 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4779 Query 358 MDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFN 417 +DV HR+RLSLK+L++YAADPAMH+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4780 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4839 Query 418 QDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVV 477 QDFY+FV SKG FKEGS+V LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV Sbjct 4840 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4899 Query 478 NKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVI 537 KYFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNV+ Sbjct 4900 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4959 Query 538 PTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 597 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4960 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 5019 Query 598 GWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLA 657 GWD ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLA Sbjct 5020 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5079 Query 658 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIV 717 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM NG+KI Sbjct 5080 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5139 Query 718 DKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYI 777 D ++++Q LY NVYR+ D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGYI Sbjct 5140 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 5199 Query 778 AGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 837 A I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5200 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5259 Query 838 ILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLT 897 IL AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5260 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 5319 Query 898 GHMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5320 NQILDSYSVILSTCDGLKFTDESFYK 5345 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 4408 to 5325 Score:1326 bits(3433), Expect:0.0, Method:Compositional matrix adjust., Identities:633/926(68%), Positives:748/926(80%), Gaps:11/926(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD NFL RVRG+ VNAR+ PC+SGLSTDV RAFDICN AGIG YYK N CRF Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4465 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD G+ LD +FVVKR +E Y EK Y+L + C VA HDFF FD+D + PHIVR+ Sbjct 4466 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRN 4525 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L++YTM+DL YALRHFD+N +L IL +Y C +YF K W+DFVENP +I +Y KL Sbjct 4526 LSKYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4585 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNTV F D +V+ GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4586 GPIFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4645 Query 240 SYLMPVLSMTDCLAAETHRDCDF--NKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHA 297 SY+MP+L+M L DC+ N ++ L +YDFTDYK++LF KYFKYW YH Sbjct 4646 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4699 Query 298 NCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMN 357 N V+C +DRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMN Sbjct 4700 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4759 Query 358 MDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFN 417 +DV HR+RLSLK+L++YAADPAMH+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4760 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4819 Query 418 QDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVV 477 QDFY+FV SKG FKEGS+V LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV Sbjct 4820 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4879 Query 478 NKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVI 537 KYFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNV+ Sbjct 4880 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4939 Query 538 PTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 597 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4940 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 4999 Query 598 GWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLA 657 GWD ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLA Sbjct 5000 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5059 Query 658 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIV 717 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM NG+KI Sbjct 5060 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5119 Query 718 DKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYI 777 D ++++Q LY NVYR+ D FV++YY FL KHFSMMILSDDGVVCYNSDYA KGYI Sbjct 5120 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYI 5179 Query 778 AGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 837 A I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5180 ANISAFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5239 Query 838 ILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLT 897 IL AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5240 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLG 5299 Query 898 GHMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF EE+FY+ Sbjct 5300 TQILDSYSVILSTCDGLKFTEESFYK 5325 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 4458 to 5375 Score:1326 bits(3432), Expect:0.0, Method:Compositional matrix adjust., Identities:633/926(68%), Positives:749/926(80%), Gaps:11/926(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD NFL RVRG+ VNAR+ PC+SGLSTDV RAFDICN AGIG YYK N CRF Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4515 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +DD G+ LD +FVVKR +E Y EK Y+L + C VA HDFF FD+D + PHIVR+ Sbjct 4516 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRN 4575 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 L++YTM+DL YALRHFD+N +L IL +Y C +YF K W+DFVENP +I +Y KL Sbjct 4576 LSKYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4635 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+LNTV F D +V+ GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4636 GPIFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4695 Query 240 SYLMPVLSMTDCLAAETHRDCDF--NKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHA 297 SY+MP+L+M L DC+ N ++ L +YDFTDYK++LF KYFKYW YH Sbjct 4696 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4749 Query 298 NCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMN 357 N V+C +DRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMN Sbjct 4750 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4809 Query 358 MDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFN 417 +DV HR+RLSLK+L++YAADPAMH+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4810 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4869 Query 418 QDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVV 477 QDFY+FV SKG FKEGS+V LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV Sbjct 4870 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4929 Query 478 NKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVI 537 KYFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNV+ Sbjct 4930 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4989 Query 538 PTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 597 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4990 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 5049 Query 598 GWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLA 657 GWD ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLA Sbjct 5050 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5109 Query 658 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIV 717 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM NG+KI Sbjct 5110 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5169 Query 718 DKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYI 777 D ++++Q LY NVYR+ D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGYI Sbjct 5170 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 5229 Query 778 AGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 837 A I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5230 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5289 Query 838 ILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLT 897 IL AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5290 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 5349 Query 898 GHMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF EE+FY+ Sbjct 5350 TQILDSYSVILSTCDGLKFTEESFYK 5375 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 4370 to 5287 Score:1325 bits(3429), Expect:0.0, Method:Compositional matrix adjust., Identities:631/925(68%), Positives:747/925(80%), Gaps:9/925(0%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKD+NFL RVRG+ V+AR+ PC+SGLSTDV RAFDICN A VAGIG + K N CRF Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D+ G LD +FVVKR + Y E CY+ ++DC VA HDFF FDV+ + PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNSEVLKA-ILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTM+DL YALRHFD+N +L IL Y C+ +YF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G +A+++ +F D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 240 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 299 SY+MP+L+M L E + N + L +YDFTDYK++LF KYFK+W YH N Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 300 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 359 V+C DDRC++ CANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 360 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 419 V HR+RLSLK+L++YAADPA+H+AS++A DLRT CFSVAA+T+G+ FQTV+PGNFNQD Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 420 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 479 FYDF++SKG KEGSSV LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 480 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 539 YFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNV+PT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 540 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 599 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 600 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 659 D ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 660 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 719 AQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALM NGNKI D Sbjct 5024 YAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 720 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 779 ++ +Q LY +VYRS D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGYIA Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 780 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 838 I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 L AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY +L Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGN 5262 Query 899 HMLDSYSVMLCGDNSAKFWEEAFYR 923 +LDSYSV+L + KF +E+FY+ Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYK 5287 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 4112 to 5027 Score:1152 bits(2980), Expect:0.0, Method:Compositional matrix adjust., Identities:562/924(61%), Positives:703/924(76%), Gaps:10/924(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 S DS +L RVRGS AR+EP + G T VFRAFD+ Y VA I K+ K N R Sbjct 4112 SVDSGYLNRVRGSSA-ARLEPLN-GSDTHHVFRAFDV--YNRDVACISKFLKVNCVRLKN 4167 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 LD D++++VK+ T E E+ Y+L+ DC AVA HDFF + + ++ RQ Sbjct 4168 LDKH----DAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQD 4223 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LTEYTMMDL YALR+FD+N+ E LK ILV G CD +YF+NKLWFD VEN V VY KL Sbjct 4224 LTEYTMMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKL 4283 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G V +A+L VK+CD MV+ G+VGV+TLDNQDLNG +YDFGDFV + G GV I SYY Sbjct 4284 GTIVARAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYY 4343 Query 240 SYLMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHAN 298 SY+MPV+ MT+CLA+E D F + + L YDFT++KV LF KYFK+W QTYH N Sbjct 4344 SYMMPVMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPN 4403 Query 299 CVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNM 358 C +C D+ C++HCANFN LFA T+P T FGP+ RK ++DGVP V + GYH+K+LG+V N Sbjct 4404 CEDCHDESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNK 4463 Query 359 DVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQ 418 D++LH RL++ EL+ + ADP++ IASS A +D RT CFSVAAL TG+T QTV+PG+FN+ Sbjct 4464 DLNLHSSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNR 4523 Query 419 DFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVN 478 +FYDF+ S+GFF+EGS +TLKHFFFAQ G+AA+ D++YY YN T+ DI Q ++V Sbjct 4524 EFYDFLRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQ 4583 Query 479 KYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIP 538 YF +Y+GGC+ A EV+VNNL+KSAG+PFNKFGKA +YY+S+SY+EQD+L+A TKRN+IP Sbjct 4584 CYFGMYEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIP 4643 Query 539 TMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 598 TMTQ+NLKYAIS K+RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4644 TMTQLNLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 4703 Query 599 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLAN 658 WD MLKTL KDV+NPHLMGWDYPKCDRA+PNM R+ +++IL KH CC++ DR+YRL N Sbjct 4704 WDNMLKTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCN 4763 Query 659 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVD 718 E AQVL+E V GG+YVKPGGT+SGDATTAYANSVFNI QAT+ANV+ L+ + N + Sbjct 4764 ELAQVLTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNN 4823 Query 719 KEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIA 778 EVK +Q LY YRS+S D FV++Y+ +L KHFSMMILSDDGVVCYNS+YAA GY+A Sbjct 4824 IEVKQLQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVA 4883 Query 779 GIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 838 + FK LYYQNNVFMS +KCW+E D+ KGPHEFCSQHT+ I D D Y+LPYPDPSRI Sbjct 4884 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRI 4943 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 LSAG FVDDIVKTD +++ER+VSLAIDAYPL+KH++ EY+ VF V L +++ LYK L Sbjct 4944 LSAGVFVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQ 5003 Query 899 HMLDSYSVMLCGDNSAKFWEEAFY 922 +LDS+SV L D +AKFW+E+FY Sbjct 5004 GVLDSFSVTLLEDATAKFWDESFY 5027 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 3937 to 4858 Score:1149 bits(2971), Expect:0.0, Method:Compositional matrix adjust., Identities:557/930(60%), Positives:711/930(76%), Gaps:17/930(1%) Query 3 DSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELD 62 D N+L RVRGS AR+ P +SG DVV RAFD+CN ++ AG+ + K N RF EL Sbjct 3937 DKNYLNRVRGS-SEARLIPLASGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQELR 3993 Query 63 DQG----HHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVR 118 D +LDSYFVVK+ T NYE EK CY+ L+ + A HDFF+F+ + +I R Sbjct 3994 DTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISR 4049 Query 119 QRLTEYTMMDLVYALRHFD-QNSEVLKAILVKYGCCD----VTYFENKLWFDFVENPSVI 173 QRLT+YTMMD YALRHFD ++ EVLK ILV YGC + + ENK W+D +EN Sbjct 4050 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYY 4109 Query 174 GVYHKLGERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVA 233 + K+G VR+A+LN ++F + MV+ G VGV+TLDNQDLNGK+YDFGDF T PG+GV Sbjct 4110 VMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4169 Query 234 IVDSYYSYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQ 293 + D+YYSY+MP+++MTD LA E + + D +K + L +YD+T+ K +LF+KYFKYWDQ Sbjct 4170 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQ 4229 Query 294 TYHANCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELG 353 YH NC +C+DDRC++HCANFN+LF+ +P+T FG + RK+FVDGVPF+ +CGYH KELG Sbjct 4230 EYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4289 Query 354 LVMNMDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRP 413 ++MN D ++ ++ L +LM + DPA+ + +SN +DLRTSCFSV ALT+G+T QTV+P Sbjct 4290 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKP 4349 Query 414 GNFNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFC 473 G+FN+DFYDF G FKEGSS+ LKHFF+ Q GNAAI DY+YY YN PTM DI Q+LFC Sbjct 4350 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFC 4409 Query 474 MEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTK 533 +EV +KYFE Y+GGC+ AS+VVVNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF +TK Sbjct 4410 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITK 4468 Query 534 RNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 593 +NV+PT+TQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A+ VIGTT Sbjct 4469 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTT 4528 Query 594 KFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRF 653 KFYGGWD ML+ L + V++P LMGWDYPKCDRAMPN+ RI ASL+LARKH CC+ +R Sbjct 4529 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERI 4588 Query 654 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANG 713 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+ Sbjct 4589 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4648 Query 714 NKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 773 IV +K +Q++LY VYR + DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4649 RDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4708 Query 774 KGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYP 833 +G +A I F+E LYYQNNVFM+++KCWVE DL+KGPHEFCSQHT+ ++ + +LPYP Sbjct 4709 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYP 4768 Query 834 DPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLY 893 DPSRIL A FVDD+ KT+ ++ER+++LAIDAYPL HE+ EY+ VF+V L YI KLY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 894 KDLTGHMLDSYSVMLCGDNSAKFWEEAFYR 923 ++L+ +ML YS ++ D +KFWE+ FY Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYE 4858 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 3937 to 4858 Score:1148 bits(2970), Expect:0.0, Method:Compositional matrix adjust., Identities:557/930(60%), Positives:711/930(76%), Gaps:17/930(1%) Query 3 DSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELD 62 D N+L RVRGS AR+ P +SG DVV RAFD+CN ++ AG+ + K N RF EL Sbjct 3937 DKNYLNRVRGS-SEARLIPLASGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQELR 3993 Query 63 DQG----HHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVR 118 D +LDSYFVVK+ T NYE EK CY+ L+ + A HDFF+F+ + +I R Sbjct 3994 DTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISR 4049 Query 119 QRLTEYTMMDLVYALRHFD-QNSEVLKAILVKYGCCD----VTYFENKLWFDFVENPSVI 173 QRLT+YTMMD YALRHFD ++ EVLK ILV YGC + + ENK W+D +EN Sbjct 4050 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYY 4109 Query 174 GVYHKLGERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVA 233 + K+G VR+A+LN ++F + MV+ G VGV+TLDNQDLNGK+YDFGDF T PG+GV Sbjct 4110 VMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4169 Query 234 IVDSYYSYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQ 293 + D+YYSY+MP+++MTD LA E + + D +K + L +YD+T+ K +LF+KYFKYWDQ Sbjct 4170 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQ 4229 Query 294 TYHANCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELG 353 YH NC +C+DDRC++HCANFN+LF+ +P+T FG + RK+FVDGVPF+ +CGYH KELG Sbjct 4230 EYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4289 Query 354 LVMNMDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRP 413 ++MN D ++ ++ L +LM + DPA+ + +SN +DLRTSCFSV ALT+G+T QTV+P Sbjct 4290 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKP 4349 Query 414 GNFNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFC 473 G+FN+DFYDF G FKEGSS+ LKHFF+ Q GNAAI DY+YY YN PTM DI Q+LFC Sbjct 4350 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFC 4409 Query 474 MEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTK 533 +EV +KYFE Y+GGC+ AS+VVVNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF +TK Sbjct 4410 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITK 4468 Query 534 RNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 593 +NV+PT+TQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A+ VIGTT Sbjct 4469 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTT 4528 Query 594 KFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRF 653 KFYGGWD ML+ L + V++P LMGWDYPKCDRAMPN+ RI ASL+LARKH CC+ +R Sbjct 4529 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERI 4588 Query 654 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANG 713 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+ Sbjct 4589 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4648 Query 714 NKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 773 IV +K +Q++LY VYR + DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4649 RDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4708 Query 774 KGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYP 833 +G +A I F+E LYYQNNVFM+++KCWVE DL+KGPHEFCSQHT+ ++ + +LPYP Sbjct 4709 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYP 4768 Query 834 DPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLY 893 DPSRIL A FVDD+ KT+ ++ER+++LAIDAYPL HE+ EY+ VF+V L YI KLY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 894 KDLTGHMLDSYSVMLCGDNSAKFWEEAFYR 923 ++L+ +ML YS ++ D +KFWE+ FY Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYE 4858 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 3939 to 4860 Score:1147 bits(2968), Expect:0.0, Method:Compositional matrix adjust., Identities:555/930(60%), Positives:709/930(76%), Gaps:17/930(1%) Query 3 DSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELD 62 D N+L RVRGS AR+ P ++G DVV RAFD+CN ++ AG+ + K N RF E+ Sbjct 3939 DKNYLNRVRGS-SEARLIPLANGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQEVR 3995 Query 63 DQG----HHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVR 118 D + DSYFVVK+ T NYE EK CY+ L+ + A HDFF+F+ + +I R Sbjct 3996 DTEDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISR 4051 Query 119 QRLTEYTMMDLVYALRHFD-QNSEVLKAILVKYGCCD----VTYFENKLWFDFVENPSVI 173 QRLT+YTMMD YALRHFD ++ EVLK ILV YGC + + ENK W+D +ENP Sbjct 4052 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYY 4111 Query 174 GVYHKLGERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVA 233 + K+G VR+A+LN ++F + MV+ G VGV+TLDNQDLNGK+YDFGDF T PG+GV Sbjct 4112 AMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4171 Query 234 IVDSYYSYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQ 293 + D+YYSY+MP+++MTD LA E + + D +K + L +YD+T+ K LF+KYFKYWDQ Sbjct 4172 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQ 4231 Query 294 TYHANCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELG 353 YH NC +C+DDRC++HCANFN+LF+ +P+T FG + RK+FVDGVPF+ +CGYH KELG Sbjct 4232 EYHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4291 Query 354 LVMNMDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRP 413 ++MN D ++ ++ L +LM + DPA+ + +SN +DLRTSCFSV AL +G+T QTV+P Sbjct 4292 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKP 4351 Query 414 GNFNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFC 473 G+FN+DFYDF G FKEGSS+ LKHFF+ Q GNAAI DY+YY YN PTM DI+Q+LFC Sbjct 4352 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFC 4411 Query 474 MEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTK 533 +EV +KYFE Y+GGC+ AS+VVVNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF TK Sbjct 4412 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTK 4470 Query 534 RNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 593 +NV+PT+TQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A VIGTT Sbjct 4471 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTT 4530 Query 594 KFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRF 653 KFYGGWD ML+ L + V++P LMGWDYPKCDRAMPN+ RI ASL+LARKH CCT +R Sbjct 4531 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERV 4590 Query 654 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANG 713 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+ Sbjct 4591 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4650 Query 714 NKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 773 IV ++K +Q++LY VYR + DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4651 RDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4710 Query 774 KGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYP 833 +G +A I F+E LYYQNNVFM+++KCWVE DL+KGPHEFCSQHT+ ++ + +LPYP Sbjct 4711 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYP 4770 Query 834 DPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLY 893 DPSRIL A FVDD+ KT+ ++ER+++LAIDAYPL HE+ EY+ VF+V L YI KLY Sbjct 4771 DPSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLY 4830 Query 894 KDLTGHMLDSYSVMLCGDNSAKFWEEAFYR 923 ++L+ +ML YS ++ D +KFWE+ FY Sbjct 4831 QELSQNMLMDYSFVMDIDKGSKFWEQEFYE 4860 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 4101 to 5016 Score:1140 bits(2949), Expect:0.0, Method:Compositional matrix adjust., Identities:550/924(60%), Positives:697/924(75%), Gaps:10/924(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 S D +L RVRGS AR+EPC+ G T V+RAFDI Y VA +GK+ K N R Sbjct 4101 STDMAYLNRVRGSSA-ARLEPCN-GTDTQHVYRAFDI--YNKDVACLGKFLKVNCVRLKN 4156 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 LD D+++VVKR T E E+ Y L C A+A HDFF + + ++ R+ Sbjct 4157 LDKH----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 4212 Query 121 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LTEYTMMDL YALR+FD+N+ +VLK+IL+K G C+ +YF NK+WFD VEN + VY L Sbjct 4213 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 4272 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G V +A+L VKFCD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4273 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 4332 Query 240 SYLMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHAN 298 SY+MPV+ MT+CLA+E D F + + L EYDFT++K LF KYFKYW YH N Sbjct 4333 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 4392 Query 299 CVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNM 358 CV+C+D++C++HCANFN LF+ T+P T FGP+ RK ++DGVP V + GYH+K+LG+V N Sbjct 4393 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 4452 Query 359 DVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQ 418 D++LH RLS+ EL+ + +DPA+ IASS A +D RT CFSVAAL TG+T QTV+PG+FN+ Sbjct 4453 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 4512 Query 419 DFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVN 478 +FYDF++ +GFF EGS +TLKHFFFAQ +AA+ D++YY YN PT+ DI Q ++V Sbjct 4513 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 4572 Query 479 KYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIP 538 +YF+IY+GGC+ A EVVV NL+KSAG+P NKFGKA +YYES+SY+EQDEL+A TKRN++P Sbjct 4573 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 4632 Query 539 TMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 598 TMTQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4633 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 4692 Query 599 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLAN 658 WD MLK L V+NP LMGWDYPKCDRA+PNM R+ +++IL KH TCC++ DRF+RL N Sbjct 4693 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 4752 Query 659 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVD 718 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+ + N + Sbjct 4753 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 4812 Query 719 KEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIA 778 EVK +Q LY YRST D +FV +YY +L KHFSMMILSDDGVVCYN+DYA+ GY+A Sbjct 4813 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 4872 Query 779 GIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 838 + FK LYYQNNVFMS +KCW+E D+ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 4873 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 4932 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 LSAG FVDD+VKTD +++ER+VSLAIDAYPL+KHE+ EY+ VF+V L +++ LYK L Sbjct 4933 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 4992 Query 899 HMLDSYSVMLCGDNSAKFWEEAFY 922 +L+S+SV L D++AKFW+E+FY Sbjct 4993 GVLESFSVTLLEDSTAKFWDESFY 5016 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4003 to 4916 Score:1132 bits(2927), Expect:0.0, Method:Compositional matrix adjust., Identities:562/922(61%), Positives:689/922(74%), Gaps:10/922(1%) Query 3 DSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELD 62 D ++L RVRGS AR+EPC+ G D V RAFDI Y VA IGK+ KTN RF LD Sbjct 4003 DQSYLNRVRGSSA-ARLEPCN-GTDPDHVSRAFDI--YNKDVACIGKFLKTNCSRFRNLD 4058 Query 63 DQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLT 122 D+Y++VKR T + E+ CY+ L+D AVA HDFF + + + ++ R+ LT Sbjct 4059 KH----DAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLT 4114 Query 123 EYTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGE 181 +YTMMDL YA+R+FD+ N EVLK ILV G C +FENK WFD VEN ++ VY KLG Sbjct 4115 KYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGP 4174 Query 182 RVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSY 241 V A+L V FCD +V+ G +GV+TLDNQDLNG +YDFGDFV T PG G A V SYYSY Sbjct 4175 IVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSY 4234 Query 242 LMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCV 300 +MP++ MT CL +E D + ++ L YDFT++K LF+KYFKYWD+TYH NC Sbjct 4235 MMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCS 4294 Query 301 NCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDV 360 +CT D C++HCANFN LF+MT+P T FGP+VRK+ +DGVP VV+ GYH+K+LG+V N+DV Sbjct 4295 DCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDV 4354 Query 361 SLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDF 420 L +LS+ +L+ + DP + +ASS A LD RT CFS+AAL+TG+T+QTV+PG+FN+DF Sbjct 4355 KLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDF 4414 Query 421 YDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKY 480 YDF+ +GFF+EGS +TLKHFFFAQ G AA+TD+NYY YN T+ DI Q F ++V KY Sbjct 4415 YDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKY 4474 Query 481 FEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTM 540 FE YDGGC+NA EVVV N DKSAG+P NKFGKAR+YYE++SY+EQD LFA+TKRNV+PTM Sbjct 4475 FECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTM 4534 Query 541 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD 600 TQMNLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+AATR AT VIG+TKFYGGWD Sbjct 4535 TQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWD 4594 Query 601 FMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANEC 660 MLK L +DVDN LMGWDYPKCDRA+PNM R+ +++IL KH CCT DRFYRL+NE Sbjct 4595 NMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNEL 4654 Query 661 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKE 720 AQVL+E V C GG+Y KPGGT+SGD TTAYANS FNI QA +ANV+ L+G + N + Sbjct 4655 AQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVT 4714 Query 721 VKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGI 780 VK +Q +Y N YRS+S D +FV +Y+++L KHFSMMILSDDGVVCYN DYA GY+A I Sbjct 4715 VKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADI 4774 Query 781 QNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS 840 FK TLYYQNNVFMS +KCWVE DL GPHEFCSQHTL I D Y+LPYPDPSRILS Sbjct 4775 NAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILS 4834 Query 841 AGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHM 900 AG FVDDIVKTD +M+ER+VSLAIDAYPLTKH YQ VF+ L +++ L K+L + Sbjct 4835 AGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGV 4894 Query 901 LDSYSVMLCGDNSAKFWEEAFY 922 LDS+SV + + KFW E FY Sbjct 4895 LDSFSVTMLEEGQDKFWSEEFY 4916 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4036 to 4941 Score:1121 bits(2900), Expect:0.0, Method:Compositional matrix adjust., Identities:553/913(61%), Positives:683/913(74%), Gaps:9/913(0%) Query 12 GSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDDQGHHLDSY 71 G +V +EPC+ G D V RAFDI Y VA IGK+ KTN RF LD D+Y Sbjct 4036 GVLVQLDLEPCN-GTDPDHVSRAFDI--YNKDVACIGKFLKTNCSRFRNLDKH----DAY 4088 Query 72 FVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTEYTMMDLVY 131 +VVKR T + E+ CY+ L+D VA HDFF++ + + ++ R+ LT+YTMMDL Y Sbjct 4089 YVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMDLCY 4148 Query 132 ALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGERVRQAILNT 190 A+R+FD+ N EVLK ILV G C+ ++FENK WFD VEN ++ VY +LG V A+L Sbjct 4149 AIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAMLKC 4208 Query 191 VKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYLMPVLSMTD 250 V FCD +V+ G +G++TLDNQDLNG +YDFGDFV T PG G A V SYYSY+MP++ MT Sbjct 4209 VAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMPLMGMTS 4268 Query 251 CLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNCTDDRCVL 309 CL +E D + ++ L YDFTD+K +LF KYFK+WD+TYH NC +CT D C++ Sbjct 4269 CLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCTSDECII 4328 Query 310 HCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSLHRHRLSL 369 HCANFN LF+MT+P T FGP+VRK+ +DGVP VV+ GYH+K+LG+V N+DV L +LS+ Sbjct 4329 HCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSM 4388 Query 370 KELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYDFVVSKGF 429 +L+ + DP + +ASS A LD RT CFS+AAL+TG+T+QTV+PG+FN+DFYDF+ +GF Sbjct 4389 TDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDFITERGF 4448 Query 430 FKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFEIYDGGCL 489 F+EGS +TLKHFFFAQ G AA+TD+NYY YN T+ DI Q F ++V KYFE YDGGC+ Sbjct 4449 FEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDGGCI 4508 Query 490 NASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAI 549 NA EVVV N DKSAG+P NKFGKAR+YYE++SY+EQD LFA+TKRNV+PTMTQMNLKYAI Sbjct 4509 NAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAI 4568 Query 550 SAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKD 609 S K RARTV GVS+LSTMT RQYHQK LKS+AATR AT VIG+TKFYGGWD MLK L +D Sbjct 4569 SGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRD 4628 Query 610 VDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVL 669 VDN LMGWDYPKCDRA+PNM R+ +++IL KH CCT DRFYRL+NE AQVL+E V Sbjct 4629 VDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQVLTEVVH 4688 Query 670 CGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVKDMQFDLY 729 C GG+Y KPGGT+SGD TTAYANS FNI QA +ANV+ L+G + N + VK +Q +Y Sbjct 4689 CTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKIY 4748 Query 730 VNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYY 789 N YRS+S D +FV +Y+++L KHFSMMILSDDGVVCYN DYA GY+A I FK TLYY Sbjct 4749 DNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYY 4808 Query 790 QNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIV 849 QNNVFMS +KCWVE DL GPHEFCSQHTL I D Y+LPYPDPSRILSAG FVDDIV Sbjct 4809 QNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIV 4868 Query 850 KTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLC 909 KTD +M+ER+VSLAIDAYPLTKH YQ VF+ L +++ L K+L +LDS+SV + Sbjct 4869 KTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTML 4928 Query 910 GDNSAKFWEEAFY 922 + KFW E FY Sbjct 4929 EEGQDKFWSEEFY 4941 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4069 to 4984 Score:1105 bits(2859), Expect:0.0, Method:Compositional matrix adjust., Identities:535/924(58%), Positives:676/924(73%), Gaps:10/924(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 S D+++L RVRGS AR+EPC+ G D RAFD+ N A IGK K+N RF Sbjct 4069 SFDNSYLNRVRGSSA-ARLEPCN-GTDIDYCVRAFDVYNKDASF--IGKNLKSNCVRFKN 4124 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 +D D++++VKR + E+ Y+LL+ C+AVA HDFF + + ++ RQ Sbjct 4125 VDKD----DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQD 4180 Query 121 LTEYTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTMMDL +ALR+FD+ + EV K ILV GCC YFE K WFD +EN + VY L Sbjct 4181 LTKYTMMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAAL 4240 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G+ V A+L V FCD MV G+VGVLTLDNQDLNG +YDFGDFV+ PG G+ SYY Sbjct 4241 GKVVANAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYY 4300 Query 240 SYLMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHAN 298 SY+MPV+ MT+CLA+E D F + + L +YDFT++K LF KYFKYW Q YH + Sbjct 4301 SYMMPVMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPD 4360 Query 299 CVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNM 358 CV+C D+ C+LHC+NFN LFA T+P T FGP+ RK+F+DGVP V + GYH+K+LGLV N Sbjct 4361 CVDCHDEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNK 4420 Query 359 DVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQ 418 DV+ H RL++ EL+ + DP + +ASS A +D RT CFSVAAL+TGLT QTV+PG+FN+ Sbjct 4421 DVNTHSTRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNK 4480 Query 419 DFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVN 478 +FYDF+ S+GFF EGS +TLKHFFF Q G+AAI D++YY YN PTM DI Q +V Sbjct 4481 EFYDFLRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAA 4540 Query 479 KYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIP 538 +YF+ Y+GGC+ + EVVV NL+KSAG P NKFGKA +YYES+SY+EQD +F++TKRN++P Sbjct 4541 RYFDCYEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILP 4600 Query 539 TMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 598 TMTQ+NLKYAIS K RARTV GVS+L+TMT RQ+HQK LKS+ ATR AT VIGTTKFYGG Sbjct 4601 TMTQLNLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGG 4660 Query 599 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLAN 658 WD MLK L DVD+P LMGWDYPKCDRAMP+M R+ +++IL KH TCCT D+FYRL+N Sbjct 4661 WDNMLKNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSN 4720 Query 659 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVD 718 E AQVL+E V GG+Y KPGGT+SGDATTAYANSVFNI QA ++N++ ++ N + + Sbjct 4721 ELAQVLTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNN 4780 Query 719 KEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIA 778 VK +Q LY N YR+++ D FVD +Y +L KHFSMMILSDD VVCYN YA GYIA Sbjct 4781 FNVKKLQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIA 4840 Query 779 GIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 838 I FK TLYYQN VFMS AKCW E DL GPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 4841 DISAFKATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRI 4900 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 +SAG FVDDI KTD +++ER+VSLAIDAYPL+KH EY+ VF+ L +++ L K L Sbjct 4901 ISAGVFVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNE 4960 Query 899 HMLDSYSVMLCGDNSAKFWEEAFY 922 +L+S+SV L ++ +KFW+E+FY Sbjct 4961 GVLESFSVTLLDEHESKFWDESFY 4984 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4044 to 4959 Score:1102 bits(2851), Expect:0.0, Method:Compositional matrix adjust., Identities:540/924(58%), Positives:678/924(73%), Gaps:10/924(1%) Query 1 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 S D ++L R RGS AR+EPC+ G D RAFDI Y V+ +GK K N RF Sbjct 4044 SVDISYLNRARGSSA-ARLEPCN-GTDIDKCVRAFDI--YNKNVSFLGKCLKMNCVRFKN 4099 Query 61 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 120 D + D YFV+KR T E E+ Y+LL A+A HDFF + +V ++ R Sbjct 4100 ADLK----DGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHN 4155 Query 121 LTEYTMMDLVYALRHFD-QNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 179 LT+YTMMDLVYA+R+FD QN +VLK +LV GCCD +YF++K W+D VEN + VY L Sbjct 4156 LTKYTMMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASL 4215 Query 180 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 239 G+ V +A+L V CD MV G+VGVLTLDNQDLNG +YDFGDFV++ P GV SYY Sbjct 4216 GKIVARAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYY 4275 Query 240 SYLMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHAN 298 SY+MP++ +T+CLA+E D F + L +YDFT++K LF KYFK+W YH N Sbjct 4276 SYMMPIMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPN 4335 Query 299 CVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNM 358 C +C DD CV+HCANFN LFA T+P T FGP+ RK+F+DGVP V + GYH+K+LGLV N Sbjct 4336 CSDCYDDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNK 4395 Query 359 DVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQ 418 DV+ H RL++ EL+ + DP++ IASS A +D RT CFSVAAL+TGLT Q V+PG+FN+ Sbjct 4396 DVNTHSVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNE 4455 Query 419 DFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVN 478 +FY+F+ +GFF EGS +TLKHFFFAQ+G+AA+ D+++Y YN PT+ DI Q ++V+ Sbjct 4456 EFYNFLRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVS 4515 Query 479 KYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIP 538 +YF+IY+GGC+ A EVVV NL+KSAG P NKFGKA +YYES+SY+EQD LFA+TKRNV+P Sbjct 4516 RYFDIYEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLP 4575 Query 539 TMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 598 TMTQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TR AT VIGTTKFYGG Sbjct 4576 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGG 4635 Query 599 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLAN 658 W+ ML+TL V+NP LMGWDYPKCDRA+PNM R+ ++++L KH CCT DRFYRL N Sbjct 4636 WNNMLRTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGN 4695 Query 659 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVD 718 E AQVL+E V GG+Y KPGGT+SGDA+TAYANS+FNI QA ++N++ L+ + + Sbjct 4696 ELAQVLTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNN 4755 Query 719 KEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIA 778 V+D+Q LY N YR TS + F+D YY +L KHFSMMILSDDGVVCYN DYA GYIA Sbjct 4756 VNVRDLQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIA 4815 Query 779 GIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 838 I FK TLYYQNNVFMS +KCWVE DL KGPHEFCSQHT+ I D D Y+LPYPDPSRI Sbjct 4816 DISAFKATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRI 4875 Query 839 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 898 LSAG FVDD+VKTD +++ER+VSLAIDAYPL+KH + EY+ VF+V L +++ L K+L Sbjct 4876 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNE 4935 Query 899 HMLDSYSVMLCGDNSAKFWEEAFY 922 +L+S+SV L + KFW E FY Sbjct 4936 GVLESFSVTLLDNQEDKFWCEDFY 4959 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Rat coronavirus (strain 681)] Sequence ID: Q9WQ77.1 Length: 307 Range 1: 1 to 307 Score:499 bits(1284), Expect:3e-171, Method:Compositional matrix adjust., Identities:232/307(76%), Positives:268/307(87%), Gaps:0/307(0%) Query 507 FNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILST 566 FNKFGKAR+YYE++S++EQDE++A TKRNV+PT+TQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 567 MTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRA 626 MT R +HQK LKS+AATRG VIGTTKFYGGWD ML+ L KDVD+P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 627 MPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 686 MPN+ RI +SL+LARKH +CC+ DRFYRLANECAQVLSE V+CGG YYVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 687 TTAYANSVFNILQATTANVSALMGANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKY 746 TTA+ANSVFNI QA +ANV +LM NG+KI D ++++Q LY NVYR+ DP FV +Y Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 747 YAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDL 806 Y FLNKHFSMMILSDDGVVCYNS++A+KGYIA I F++ LYYQNNVFMSEAKCWVETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 807 KKGPHEF 813 +KGPHEF Sbjct 301 EKGPHEF 307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Turkey coronavirus (strain Minnesota)] Sequence ID: Q9WQ76.1 Length: 306 Range 1: 1 to 306 Score:451 bits(1159), Expect:2e-152, Method:Compositional matrix adjust., Identities:212/307(69%), Positives:254/307(82%), Gaps:1/307(0%) Query 507 FNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILST 566 FNKFGKAR+YYE MS +EQD+LF TK+NV+PT+TQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 567 MTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRA 626 MTNRQ+HQK+LKS+ TR A VIGTTKFYGGWD ML+ L + V++P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 627 MPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 686 MPN+ RI ASL+LARKH CCT +R YRL NECAQVLSE VL GG YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 687 TTAYANSVFNILQATTANVSALMGANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKY 746 TTAYANSVFNI+QAT+ANV+ L+ IV ++K +Q++LY VYR + DP FV+K+ Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 747 YAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDL 806 Y++L K+FS+MI +DDGVVCYN+ A +G +A I F+E LYYQNNV+M+++KCWVE DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 807 KKGPHEF 813 +KGPHEF Sbjct 300 EKGPHEF 306 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 4929 to 5364 Score:120 bits(301), Expect:2e-27, Method:Compositional matrix adjust., Identities:117/464(25%), Positives:203/464(43%), Gaps:34/464(7%) Query 438 LKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFEIYDGGCLNASEVVVN 497 K+F++ + A+ D YY Y K + + + + E Y +N Sbjct 4929 FKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYR---INERFTYEQ 4985 Query 498 NLDKSAGHPFNKFG-KARVYYESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRAR 556 + + N G + Y ++ + LF ++ +P T++ K+A+SAK RAR Sbjct 4986 AKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARAR 5045 Query 557 TVAGVSILSTMTNRQYHQKMLKSM---AATRGATCVIGTTKFYGGWDFMLKTLYKDVDNP 613 TV+ S +++ R H+ + M A G C+IG +K+ + LK Y ++ Sbjct 5046 TVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGF 5105 Query 614 HLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGG 673 + G DY KCDR P R + +L ++ + NE + + +LC G Sbjct 5106 DVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEKSWLYLNEVNSYMLDTMLCDGM 5161 Query 674 YYVKPGGTSSGDATTAYANSVFNILQATTANVSALMG--ANGNKIVDKEVKDMQFDLYVN 731 KPGGTSSGDATTA++N+ +N + ++ + GNK++ + Sbjct 5162 LLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLSEGNKVMRIAAHNAYTTGDYQ 5221 Query 732 VYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQN 791 V+ + D +F Y FLN LSDD + ++ A K I +NF L Sbjct 5222 VFNTLLED-QFQTNY--FLN------FLSDDSFI-FSKPEALK--IFTCENFSNKLQTIL 5269 Query 792 NVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKT 851 + + + K W K EFCS H IK + +FL P R+L++ +D + Sbjct 5270 HTKVDQTKSW---STKGHIEEFCSAHI--IKTDGEYHFL--PSRGRLLASLLILDKLSDV 5322 Query 852 DGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKD 895 D M RFV++ ++ ++++ + +F V+L +++ KD Sbjct 5323 DIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKD 5364 Range 2: 4660 to 4753 Score:37.0 bits(84), Expect:0.039, Method:Compositional matrix adjust., Identities:38/120(32%), Positives:52/120(43%), Gaps:38/120(31%) Query 116 IVRQRLTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGV 175 ++R +++++ DLVYA+ DQ+ L + G FV NPS Sbjct 4660 LIRGPTSQWSLGDLVYAIWLGDQD------YLSECG--------------FVFNPSRDEF 4699 Query 176 YHKLGER------VRQAILN------TVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDF 223 +R + AILN VK C K LTLDN DLNG+ YDFGD+ Sbjct 4700 LDDANQRSFLANLLEPAILNFSHIYWQVKMCKVPYK------LTLDNVDLNGQLYDFGDY 4753 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 4882 to 5240 Score:112 bits(281), Expect:3e-25, Method:Compositional matrix adjust., Identities:105/384(27%), Positives:179/384(46%), Gaps:30/384(7%) Query 517 YESMSYQEQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKM 576 Y ++ + +LF ++ +P T++ K+A+SAK RARTV+ S +++ R H+ + Sbjct 4882 YRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPV 4941 Query 577 LKSM---AATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRI 633 M A C+IG +K+ + LK Y ++ + G DY KCDR P R Sbjct 4942 TSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRA 5001 Query 634 FASLILARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANS 693 + +L G D + L NE + + +LC G KPGGTSSGDATTA++N+ Sbjct 5002 LTAALLYELGGW---EEDSWLYL-NEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNT 5057 Query 694 VFNILQATTANVSALMG--ANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLN 751 +N + ++ ++ NK++ + V+ +T + +F Y FLN Sbjct 5058 FYNYMVHYVVAFKTILSDLSDCNKVMRIAAHNAYTTGDYGVF-NTLLEEQFQTNY--FLN 5114 Query 752 KHFSMMILSDDGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPH 811 LSDD + ++ A K I +NF L + + K W T + Sbjct 5115 ------FLSDDSFI-FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTGHIE--- 5162 Query 812 EFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLT 871 EFCS H IK + +FL P R+L++ +D + D M RFV++ ++ + Sbjct 5163 EFCSAHI--IKTDGEYHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYS 5216 Query 872 KHEDIEYQNVFWVYLQYIEKLYKD 895 +++ + +F V+L +++ KD Sbjct 5217 RYQPEFFNGLFQVFLDKVQQFRKD 5240 Range 2: 4480 to 4629 Score:40.4 bits(93), Expect:0.004, Method:Compositional matrix adjust., Identities:58/187(31%), Positives:80/187(42%), Gaps:45/187(24%) Query 45 AGIGKYYKTNTCRFVELDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDC--DAVAPHD 102 AGI K K+NT VE Q F++KR ++H + L R ++ PH Sbjct 4480 AGIVKVNKSNT-HSVEYKGQR------FMIKRVK------DQHEFALARTAFLPSIIPHH 4526 Query 103 FFIFDVDKVKTPHIVRQRLTEYTMMDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKL 162 V + +VR T++++ DLVYA+ DQ A L + G Sbjct 4527 M----VHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQ------AYLDECG----------- 4565 Query 163 WFDFVENPSVIGVYHKLGERVRQAIL---NTVKFCD--HMVKAGLVGV-LTLDNQDLNGK 216 FV NPS +R A L + FC+ H VK V +TLDN DL G+ Sbjct 4566 ---FVFNPSRDEFLDDANQRSYLANLLEPAILSFCEIFHCVKGCQVPYKITLDNLDLKGQ 4622 Query 217 WYDFGDF 223 YDFGD+ Sbjct 4623 LYDFGDY 4629 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 4888 to 5169 Score:84.0 bits(206), Expect:2e-16, Method:Compositional matrix adjust., Identities:76/298(26%), Positives:130/298(43%), Gaps:33/298(11%) Query 416 FNQDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNA--AITDYNYYSYNLPTMCD---IKQM 470 + + FYD + + G +++ + Q G A+ D+ YY+YN P D +K + Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 471 LFCMEVVNKYFEIYDGGCLNASEVVVNNLDKSAGHP-FNKFGKA------RVYYESMSYQ 523 M +K+ +I L+ +G P + G + + ++ Sbjct 4948 YTYMR--DKFMKIISTD---------EKLNHQSGAPRMSSMGVGVSGFFQKTVWNALPED 4996 Query 524 EQDELFAMTKRNVIPTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAAT 583 L + V+P T + K+ K R RT+ G S +++ R H+ + M T Sbjct 4997 FSPRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQT 5056 Query 584 RGATC---VIGTTKFYGGWDFMLKTLYKD-VDNPHLMGWDYPKCDRAMPNMCR-IFASLI 638 A +IG +KF G+ L + + +++ +MG DY KCDR+ P +CR + A+L Sbjct 5057 AQANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALF 5116 Query 639 LARKHGTCCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFN 696 H + NE L + G + KPGGT+SGD+TTA++NS +N Sbjct 5117 YELGH-----LEPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYN 5169 Range 2: 4557 to 4739 Score:50.4 bits(119), Expect:3e-06, Method:Compositional matrix adjust., Identities:57/217(26%), Positives:81/217(37%), Gaps:52/217(23%) Query 25 GLSTDVVFRAFDICNYKAK------------VAGIGKYYKTNTCRF------VELDDQGH 66 GL+ D F F YK VA + K +K NT + L D G Sbjct 4557 GLTLDTAFCPFQTGEYKPSSREFYINILNNNVASLRKVFKKNTASIPSENGTIMLKDTGT 4616 Query 67 HLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTEYTM 126 + Y V K+ LL V H F D T +++R T Y++ Sbjct 4617 AHEIY-VAKQ--------------LLAKGLPVLQHARFNHD----GTDYLIRYYTTPYSL 4657 Query 127 MDLVYALRHFDQNSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGERVRQA 186 DLVYA D +L + C D P Y+ E++R Sbjct 4658 GDLVYAYMVGDFKHMLLALDITDETCLD---------------PGNYSSYYNFKEQLRNK 4702 Query 187 ILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDF 223 + + + + ++ A L +TLDN DLNG YDFGD+ Sbjct 4703 LASVIPNVNKILAAELPLAITLDNIDLNGFLYDFGDY 4739 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-A; Short=NIA; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-B; Short=NIB; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Watermelon mosaic virus 2 (isolate USA)] Sequence ID: P18478.3 Length: 1017 Range 1: 440 to 544 Score:37.4 bits(85), Expect:0.032, Method:Compositional matrix adjust., Identities:29/116(25%), Positives:54/116(46%), Gaps:17/116(14%) Query 589 VIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAM--PNMCRIFASLILARKHGTC 646 +G TKFYGGWD ++++L GW Y D + ++ + + +L+ + C Sbjct 440 TVGMTKFYGGWDKLMRSLPD--------GWTYCHADGSQFDSSLTPLLLNAVLSIR---C 488 Query 647 CTTRDRFY---RLANECAQVLSEYVLCGGG-YYVKPGGTSSGDATTAYANSVFNIL 698 C D + L N A+++ +L G + K G +SG +T N++ ++ Sbjct 489 CFMEDWWVGREMLENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVI 544 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain California)] Sequence ID: P18479.2 Length: 3080 Range 1: 2356 to 2522 Score:34.3 bits(77), Expect:0.25, Method:Compositional matrix adjust., Identities:40/174(23%), Positives:73/174(41%), Gaps:29/174(16%) Query 455 NYYSYNLPT---MCDIKQMLFCMEVVNKY---FEIYDGGCLNASEVVVNNLDKSAGHPFN 508 +++ YN P D + L ++ V + FE + + E + N+L+ A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 509 KFGKARVYYESMS-YQEQDELFAMTKR--NVIPTMTQMNLKYAISA-----KNRARTVAG 560 GK + Y+E + + + LF +R N + +LK + N+ RT Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 561 VSILSTMT--------NRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTL 606 I + + N ++++K LK +G TKFYGGWD ++++L Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSL 2522 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Beet mosaic virus] Sequence ID: Q6XW15.1 Length: 3085 Range 1: 2427 to 2618 Score:33.1 bits(74), Expect:0.56, Method:Compositional matrix adjust., Identities:50/213(23%), Positives:82/213(38%), Gaps:46/213(21%) Query 511 GKARVYYESMSYQEQDELFAMT-KRNVIPTMTQMN--LKYAISAK-----NRARTVAGVS 562 GK + Y+E ++ E+++L ++ +R M N LK + K N+ RT Sbjct 2427 GKKKEYFEQLNTTEREDLLRLSCERLYEGKMGVWNGSLKAELRPKEKLEQNKTRTFTAAP 2486 Query 563 ILSTMT--------NRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVDNPH 614 I + + N +++ LK +G TKFYGGW+ +L+ L Sbjct 2487 IDTLLGGKVCVDDFNNRFYSLNLK-------GPWSVGMTKFYGGWNELLQKLPD------ 2533 Query 615 LMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYR--------LANECAQVLSE 666 GW Y D + F S + R+ F L N +++ Sbjct 2534 --GWIYCDADGSQ------FDSSLTPYLINAVVQIREHFMEDWEIGRTMLRNFYTEIVYT 2585 Query 667 YVLCGGGYYVKP-GGTSSGDATTAYANSVFNIL 698 +L G VK G +SG +T N++ IL Sbjct 2586 PILTPDGTIVKKFKGNNSGQPSTVVDNTLMVIL 2618 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Bean yellow mosaic virus] Sequence ID: P17765.2 Length: 3056 Range 1: 2486 to 2604 Score:32.7 bits(73), Expect:0.75, Method:Compositional matrix adjust., Identities:35/135(26%), Positives:51/135(37%), Gaps:25/135(18%) Query 589 VIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCT 648 +G TKFYGGWD +L +L GW Y D + F S + Sbjct 2486 TVGITKFYGGWDRLLDSLPD--------GWVYCDADGSQ------FDSSLTPYLLNAVLE 2531 Query 649 TRDRFYR--------LANECAQVLSEYVLCGGGYYVKP-GGTSSGDATTAYANSVFNILQ 699 R R L N +++ +L G VK G +SG +T N++ I+ Sbjct 2532 MRLRLMEEWDLGEQMLKNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVIMA 2591 Query 700 ATTANVSALMGANGN 714 A + +G GN Sbjct 2592 VYYA--AEKLGIKGN 2604 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Peanut mottle virus (strain M)] Sequence ID: O56075.1 Length: 3099 Range 1: 2419 to 2551 Score:32.0 bits(71), Expect:1.5, Method:Compositional matrix adjust., Identities:38/149(26%), Positives:58/149(38%), Gaps:33/149(22%) Query 493 EVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELF-AMTKRNVIPTMTQMN--LKYAI 549 E ++++L+ A GK + Y+ES+S E+ + A +R M N LK + Sbjct 2419 EAILDSLNMKAAVGALYKGKKKEYFESLSEPEKHHIVQASCERLFYGEMGVWNGSLKAEL 2478 Query 550 SAK-----NRARTVAGVSILSTM---------TNRQYHQKMLKSMAATRGATCVIGTTKF 595 K N+ RT I + + NR Y + +G TKF Sbjct 2479 RPKEKVALNKTRTFTAAPIDTLLGGKCCVDDFNNRFYSLNI--------EGPWTVGMTKF 2530 Query 596 YGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 YGGWD +++ L GW Y D Sbjct 2531 YGGWDKLMRKLPD--------GWRYCHAD 2551 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Potato virus Y strain Hungarian] Sequence ID: Q02963.1 Length: 3061 Range 1: 2497 to 2513 Score:31.6 bits(70), Expect:1.6, Method:Compositional matrix adjust., Identities:11/17(65%), Positives:14/17(82%), Gaps:0/17(0%) Query 590 IGTTKFYGGWDFMLKTL 606 +G TKFYGGWD +L+ L Sbjct 2497 VGMTKFYGGWDRLLRRL 2513 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Potato virus Y strain N] Sequence ID: P18247.2 Length: 3063 Range 1: 2499 to 2515 Score:31.6 bits(70), Expect:1.9, Method:Compositional matrix adjust., Identities:11/17(65%), Positives:14/17(82%), Gaps:0/17(0%) Query 590 IGTTKFYGGWDFMLKTL 606 +G TKFYGGWD +L+ L Sbjct 2499 VGMTKFYGGWDKLLRRL 2515 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Pepper mottle virus (California isolate)] Sequence ID: Q01500.1 Length: 3068 Range 1: 2497 to 2601 Score:31.6 bits(70), Expect:2.1, Method:Compositional matrix adjust., Identities:28/113(25%), Positives:46/113(40%), Gaps:11/113(9%) Query 589 VIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAM--PNMCRIFASLILARKHGTC 646 +G TKFYGGWD +L L GW Y D + ++ + +L ++ Sbjct 2497 TVGMTKFYGGWDKLLTALP--------AGWIYCDADGSQFDSSLTPYLINAVLTIRYAFM 2548 Query 647 CTTRDRFYRLANECAQVLSEYVLCGGGYYVKP-GGTSSGDATTAYANSVFNIL 698 + L N +++ + G VK G +SG +T NS+ +L Sbjct 2549 EDWDIGYKMLQNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVL 2601 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Bean common mosaic necrosis virus NL-3] Sequence ID: Q65399.1 Length: 3066 Range 1: 2509 to 2613 Score:31.2 bits(69), Expect:2.2, Method:Compositional matrix adjust., Identities:29/119(24%), Positives:48/119(40%), Gaps:23/119(19%) Query 589 VIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCT 648 +G TKFYGGWD +++ L GW Y D + F S + + + Sbjct 2509 TVGMTKFYGGWDKLMRALPD--------GWVYCHADGSQ------FDSSLTPLLLNSVLS 2554 Query 649 TRDRFYR--------LANECAQVLSEYVLC-GGGYYVKPGGTSSGDATTAYANSVFNIL 698 R F L N A+++ +L G + K G +SG +T N++ ++ Sbjct 2555 IRSFFMEDWWVGKEMLENLYAEIVYTPILTPDGTIFKKFRGNNSGQPSTVVDNTLMVVI 2613 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Singapore)] Sequence ID: O36979.2 Length: 3083 Range 1: 2359 to 2525 Score:31.2 bits(69), Expect:2.8, Method:Compositional matrix adjust., Identities:39/174(22%), Positives:72/174(41%), Gaps:29/174(16%) Query 455 NYYSYNLPTMC---DIKQMLFCMEVVNKY---FEIYDGGCLNASEVVVNNLDKSAGHPFN 508 +++ YN P + D + L + V + FE + + E + ++L+ A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ 2418 Query 509 KFGKARVYYESM-SYQEQDELFAMTKR--NVIPTMTQMNLKYAISA-----KNRARTVAG 560 GK + Y+E + ++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 561 VSILSTMT--------NRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTL 606 I + + N +++ K LK +G TKFYGGWD +++ L Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMREL 2525 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Plum pox virus isolate NAT] Sequence ID: P17766.1 Length: 3125 Range 1: 2514 to 2538 Score:31.2 bits(69), Expect:2.8, Method:Compositional matrix adjust., Identities:16/35(46%), Positives:19/35(54%), Gaps:10/35(28%) Query 590 IGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 +G TKF GGWD +LK L + GW Y CD Sbjct 2514 VGMTKFRGGWDKLLKALPE--------GWIY--CD 2538 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Reunion Island)] Sequence ID: Q89330.1 Length: 3083 Range 1: 2359 to 2525 Score:30.4 bits(67), Expect:4.4, Method:Compositional matrix adjust., Identities:37/174(21%), Positives:71/174(40%), Gaps:29/174(16%) Query 455 NYYSYNLPTMCDIKQMLFCMEVVNKY------FEIYDGGCLNASEVVVNNLDKSAGHPFN 508 +++ YN P + + +E V+ FE + + E + ++L+ A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ 2418 Query 509 KFGKARVYYESM-SYQEQDELFAMTKR--NVIPTMTQMNLKYAISA-----KNRARTVAG 560 GK + Y+E + ++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 561 VSILSTMT--------NRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTL 606 I + + N +++ K LK +G +KFYGGWD +++ L Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRAL 2525 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 1395 to 1501 Score:30.4 bits(67), Expect:4.6, Method:Compositional matrix adjust., Identities:26/112(23%), Positives:42/112(37%), Gaps:5/112(4%) Query 587 TCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTC 646 +C +G + W + +L + +N ++ DY D + S ++ G Sbjct 1395 SCQVGINPYGMEWSRLAMSLLEKGNN--ILCCDYSSFDGLLTKQVMHLMSEMINELCGGS 1452 Query 647 CTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNIL 698 + + L C S Y LC G + G SG T NS+FN L Sbjct 1453 SRLKQQRTNLLMACC---SRYALCKGEVWRVECGIPSGFPLTVICNSIFNEL 1501 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Plum pox virus D] Sequence ID: P13529.2 Length: 3141 Range 1: 2515 to 2539 Score:30.0 bits(66), Expect:5.0, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:10/35(28%) Query 590 IGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 +G TKF GGWD +L+ L + GW Y CD Sbjct 2515 VGMTKFRGGWDKLLRALPE--------GWIY--CD 2539 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Plum pox virus strain Rankovic] Sequence ID: P17767.2 Length: 3140 Range 1: 2514 to 2538 Score:30.0 bits(66), Expect:5.1, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:10/35(28%) Query 590 IGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 +G TKF GGWD +L+ L + GW Y CD Sbjct 2514 VGMTKFRGGWDKLLRALPE--------GWIY--CD 2538 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Potato virus A] Sequence ID: Q85197.1 Length: 3059 Range 1: 2408 to 2515 Score:29.3 bits(64), Expect:8.4, Method:Compositional matrix adjust., Identities:31/115(27%), Positives:49/115(42%), Gaps:23/115(20%) Query 511 GKARVYYESMSYQEQDELFAMT-KRNVIPTMTQMN--LKYAISAK-----NRARTVAGVS 562 GK R Y+++MS E++ L ++ KR + N LK + K N+ RT Sbjct 2408 GKKRDYFDAMSPSEREHLLFLSCKRLYFGQLGVWNGSLKAELRPKEKVDLNKTRTFTAAP 2467 Query 563 ILSTMT--------NRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKD 609 I + + N ++ LK A +G TKFYG W+ ++ L D Sbjct 2468 IETLLGGKVCVDDFNNMFYSLHLK-------APWSVGMTKFYGTWNQLMCKLPDD 2515 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Lettuce mosaic virus (strain 0 / French isolate)] Sequence ID: P31999.3 Length: 3255 Range 1: 2675 to 2703 Score:29.3 bits(64), Expect:9.0, Method:Compositional matrix adjust., Identities:16/39(41%), Positives:19/39(48%), Gaps:10/39(25%) Query 586 ATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 A +G TKFYGGW+ +L L GW Y CD Sbjct 2675 APWTVGMTKFYGGWNELLTKLPD--------GWVY--CD 2703 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Lettuce mosaic virus (strain E)] Sequence ID: P89876.1 Length: 3255 Range 1: 2675 to 2703 Score:29.3 bits(64), Expect:9.5, Method:Compositional matrix adjust., Identities:16/39(41%), Positives:19/39(48%), Gaps:10/39(25%) Query 586 ATCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 A +G TKFYGGW+ +L L GW Y CD Sbjct 2675 APWTVGMTKFYGGWNELLTKLPD--------GWVY--CD 2703 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Plum pox virus SK 68] Sequence ID: Q84934.1 Length: 3140 Range 1: 2514 to 2538 Score:29.3 bits(64), Expect:9.6, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:18/35(51%), Gaps:10/35(28%) Query 590 IGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCD 624 +G TKF GGWD +L+ L GW Y CD Sbjct 2514 VGMTKFRGGWDKLLRALPD--------GWIY--CD 2538