TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: sa_genome.fasta
           14 sequences; 2,212,135 total letters



Query= ENGB_BASCU

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL766850|AL766850 Streptococcus agalactiae NEM316 complete...   261    2e-71
  embl|AL766852|AL766852 Streptococcus agalactiae NEM316 complete...  52.0    2e-08


> embl|AL766850|AL766850 Streptococcus agalactiae NEM316 complete 
genome, segment 8 
Length=199050

 Score =  261 bits (667),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 118/189 (63%), Positives = 148/189 (79%), Gaps = 0/189 (0%)
 Frame = -1

Query  1       MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ  60
               +    + I++SA     YP+  LPE+ALAGRSNVGKSSFIN+L+ RKNLARTSSKPGKTQ
Sbjct  119151  LNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQ  118972

Query  61      TLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS  120
                LNFY I+D+L FVDVPGYG+AKVSK+ER  WG+MIE Y+ TR+ L+ VV +VD RH PS
Sbjct  118971  LLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPS  118792

Query  121     NDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK  180
                DD+Q+YEFLKYY IPVI++ATKADKIP+GKW+KH   +++ LN D +D  I+FSS  + 
Sbjct  118791  ADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRT  118612

Query  181     GKDEAWGAI  189
               G DE+W  I
Sbjct  118611  GLDESWDTI  118585


> embl|AL766852|AL766852 Streptococcus agalactiae NEM316 complete 
genome, segment 10 
Length=174050

 Score = 52.0 bits (123),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/125 (32%), Positives = 64/125 (52%), Gaps = 9/125 (7%)
 Frame = -1

Query  26    IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT--LNFYIINDE-LHFVDVPGYGFA  82
             +A+ GR NVGKS+F+N ++ +K +A  S K   T+   +  Y    E + F+D PG    
Sbjct  2828  VAILGRPNVGKSTFLNHVMGQK-IAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPG----  2664

Query  83    KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT  142
              + K +      M+E+  +T  E++ V+ +V         D  + E LK   IPVI++  
Sbjct  2663  -IHKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVIN  2487

Query  143   KADKI  147
             K DK+
Sbjct  2486  KIDKV  2472



Lambda     K      H
   0.315    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 86883400


  Database: sa_genome.fasta
    Posted date:  Oct 25, 2012  10:52 PM
  Number of letters in database: 2,212,135
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40