RID: A3X6TDM301R Job Title:Papain-like proteinase Program: BLASTP Query: Papain-like proteinase ID: lcl|Query_13976(amino acid) Length: 1922 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 3993 3993 100% 0.0 100.00 P0C6U8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 3986 3986 100% 0.0 100.00 P0C6X7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 3736 3736 100% 0.0 94.96 P0C6T7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 3727 3727 100% 0.0 94.96 P0C6W6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 3578 3578 100% 0.0 91.21 P0C6F8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 3568 3568 100% 0.0 91.21 P0C6W2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 3540 3540 100% 0.0 90.12 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 3531 3531 100% 0.0 90.12 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 739 739 100% 0.0 29.53 P0C6W4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 738 738 100% 0.0 29.53 P0C6T5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 682 872 96% 0.0 30.25 K9N638.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 681 870 96% 0.0 30.25 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 672 873 91% 0.0 31.00 P0C6T6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 671 870 91% 0.0 30.86 P0C6W5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 521 672 80% 6e-150 30.06 P0C6U0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 520 673 79% 7e-150 30.33 P0C6T9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 521 672 80% 8e-150 30.06 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 520 674 79% 9e-150 30.33 P0C6W8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 519 667 79% 2e-149 30.06 P0C6U1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 519 667 79% 2e-149 30.06 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 519 671 79% 3e-149 30.33 P0C6T8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 519 672 79% 3e-149 30.33 P0C6W7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 517 665 79% 1e-148 30.37 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 516 664 79% 2e-148 30.37 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 496 623 80% 9e-142 29.62 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 495 622 79% 1e-141 29.62 P0C6U9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 489 640 76% 1e-139 29.87 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 489 640 77% 2e-139 29.87 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 484 652 76% 5e-138 28.76 P0C6V1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 483 682 77% 1e-137 29.53 P0C6U3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 483 685 77% 1e-137 29.53 P0C6U4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 483 686 77% 1e-137 29.53 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 483 651 76% 1e-137 28.76 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 482 681 77% 3e-137 29.53 P0C6X2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 481 682 77% 6e-137 29.53 P0C6U5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 480 682 77% 9e-137 29.53 P0C6X4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 310 494 52% 1e-83 30.99 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 310 494 52% 2e-83 30.99 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 309 486 53% 5e-83 30.86 P0C6F7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 308 484 53% 8e-83 30.86 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 195 396 59% 2e-48 27.27 P0C6X1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 195 397 59% 2e-48 27.09 P0C6U2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 187 321 53% 7e-46 26.83 P0C6F6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 186 321 53% 1e-45 26.83 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 177 312 49% 9e-43 26.72 P0C6X5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 176 311 49% 1e-42 26.72 P0C6U6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 174 352 51% 7e-42 28.19 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 173 352 56% 8e-42 28.19 P0C6Y4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 164 289 52% 6e-39 28.12 P0C6V5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 163 287 52% 1e-38 28.18 P0C6Y3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 162 277 45% 3e-38 27.81 P0C6V3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 161 276 45% 4e-38 27.87 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 161 276 45% 4e-38 27.87 P0C6Y1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 152 308 51% 3e-35 26.65 P0C6V2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 152 307 54% 3e-35 26.65 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 140 250 45% 8e-32 26.25 Q98VG9.2 RecName: Full=Uncharacterized protein TM_0508 [Thermotoga... 72.8 72.8 6% 2e-11 36.76 Q9WYX8.1 RecName: Full=Uncharacterized protein PAE1111 [Pyrobaculum... 68.2 68.2 5% 2e-11 39.62 Q8ZXT3.1 RecName: Full=Uncharacterized protein SSO2899 [Saccharolobus... 67.4 67.4 5% 3e-11 42.45 Q97UU4.1 RecName: Full=Uncharacterized protein Saci_1252 [Sulfolobus... 67.4 67.4 5% 4e-11 38.10 Q4J9D2.1 RecName: Full=Uncharacterized protein STK_23830 [Sulfurisphaer... 61.2 61.2 5% 4e-09 38.68 Q96XY5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 65.1 65.1 8% 7e-09 28.02 P0C6F3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 65.1 65.1 8% 8e-09 28.02 P0C6V7.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 59.3 59.3 7% 2e-08 31.41 A7MG20.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 58.5 58.5 7% 3e-08 33.12 B5F961.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 58.2 58.2 6% 5e-08 32.26 A8AI35.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 57.8 57.8 6% 5e-08 32.68 P0A8D6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 62.0 62.0 8% 6e-08 27.72 P0C6V8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... 62.0 62.0 8% 7e-08 27.72 P0C6F4.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 56.6 56.6 7% 1e-07 30.77 C9Y0V8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 56.6 56.6 7% 2e-07 32.48 P67341.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 55.8 55.8 7% 3e-07 31.85 B4T2X8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 54.3 54.3 7% 9e-07 31.85 B5RBF3.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 53.9 53.9 5% 1e-06 30.89 B5XXK9.1 RecName: Full=Protein mono-ADP-ribosyltransferase PARP14;... 56.6 56.6 5% 2e-06 32.00 Q460N5.3 RecName: Full=Protein mono-ADP-ribosyltransferase PARP9;... 56.6 56.6 6% 2e-06 31.65 Q8CAS9.2 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 52.4 52.4 6% 4e-06 33.57 Q0T5Z6.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 52.4 52.4 5% 4e-06 31.71 A4W960.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 52.4 52.4 5% 5e-06 32.52 B7LT90.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 55.5 55.5 6% 5e-06 35.86 P36327.3 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 52.0 52.0 5% 6e-06 32.26 D2TT52.2 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 51.6 51.6 6% 7e-06 32.86 Q32E73.1 RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName:... 51.6 51.6 5% 7e-06 30.89 D5CE05.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 54.7 54.7 6% 9e-06 35.17 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 54.7 54.7 6% 9e-06 35.17 P36328.2 RecName: Full=Uncharacterized protein FN1951 [Fusobacterium... 50.8 50.8 5% 2e-05 35.51 Q8RHQ2.1 RecName: Full=Macro domain-containing protein CT2219... 49.3 49.3 7% 4e-05 31.51 Q8KAE4.1 RecName: Full=Protein mono-ADP-ribosyltransferase PARP9;... 52.0 52.0 7% 5e-05 29.38 Q8IXQ6.2 RecName: Full=Macro domain-containing protein VPA0103 [Vibrio... 48.5 48.5 6% 7e-05 29.79 Q87JZ5.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 51.6 51.6 6% 8e-05 33.79 Q8V294.3 RecName: Full=Protein mono-ADP-ribosyltransferase PARP14;... 51.2 51.2 6% 1e-04 32.12 Q2EMV9.3 RecName: Full=Macro domain-containing protein TTE0995... 47.8 47.8 5% 2e-04 33.87 Q8RB30.1 RecName: Full=Macro domain-containing protein LA_4133... 46.2 46.2 5% 5e-04 33.07 Q8EYT0.1 RecName: Full=Macro domain-containing protein RSc0334 [Ralston... 46.2 46.2 5% 5e-04 33.33 Q8Y2K1.1 RecName: Full=Macro domain-containing protein LIC_13295... 46.2 46.2 5% 6e-04 33.07 Q72M93.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 48.9 48.9 6% 6e-04 33.10 Q9WJC7.3 RecName: Full=Macro domain-containing protein; AltName:... 45.8 45.8 6% 8e-04 30.16 Q93SX7.1 RecName: Full=O-acetyl-ADP-ribose deacetylase 1; AltName:... 45.4 45.4 6% 0.001 29.41 E1SDF1.1 RecName: Full=Macro domain-containing protein MM_0177... 45.4 45.4 7% 0.001 33.79 Q8Q0F9.1 RecName: Full=Macro domain-containing protein lp_3408... 43.1 43.1 7% 0.005 32.12 Q88SK6.1 RecName: Full=Macro domain-containing protein SCO6450... 43.1 43.1 6% 0.006 31.88 Q9ZBG3.1 RecName: Full=ADP-ribose glycohydrolase AF_1521; AltName:... 42.7 42.7 6% 0.009 29.93 O28751.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 44.7 44.7 7% 0.009 30.11 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 44.3 44.3 6% 0.015 33.58 Q4QXJ8.3 RecName: Full=Uncharacterized protein PH1513 [Pyrococcus... 42.0 42.0 6% 0.017 30.67 O59182.1 RecName: Full=Macro domain-containing protein LMOf2365_2748... 41.6 41.6 5% 0.020 32.26 Q71W03.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 43.5 43.5 9% 0.022 25.00 Q8BCR0.1 RecName: Full=Macro domain-containing protein lmo2759 [Listeri... 41.6 41.6 5% 0.022 32.26 Q8Y3S3.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 43.1 43.1 9% 0.030 23.94 O40955.1 RecName: Full=Macro domain-containing protein lin2902 [Listeri... 40.8 40.8 6% 0.033 32.28 Q926Y8.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 43.1 43.1 8% 0.034 27.81 Q306W6.3 RecName: Full=Non-structural polyprotein p200; Short=p200;... 42.7 42.7 9% 0.035 23.94 P13889.5 RecName: Full=Uncharacterized protein PYRAB06560 [Pyrococcus... 40.8 40.8 5% 0.037 34.11 Q9V0Y3.2 RecName: Full=Macro domain-containing protein MA_1614... 40.4 40.4 6% 0.057 31.34 Q8TQD0.1 RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName:... 40.8 40.8 5% 0.079 30.71 Q8K4G6.2 RecName: Full=Macro domain-containing protein PA3693... 39.7 39.7 6% 0.090 29.50 Q9HXU7.1 RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName:... 40.4 40.4 7% 0.13 28.57 Q9BQ69.2 RecName: Full=Macro domain-containing protein XCC3184... 39.3 39.3 5% 0.13 28.57 Q8P5Z8.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 40.8 40.8 6% 0.17 32.09 Q306W8.3 RecName: Full=Macro domain-containing protein XAC3343... 38.5 38.5 5% 0.19 28.57 Q8PHB6.2 RecName: Full=Uncharacterized protein Ta1105 [Thermoplasma... 38.9 38.9 6% 0.20 28.47 Q9HJ67.2 RecName: Full=Uncharacterized protein TV0719 [Thermoplasma... 38.5 38.5 5% 0.20 33.04 Q97AU0.1 RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName:... 39.7 39.7 5% 0.26 31.01 Q6PAV8.1 RecName: Full=Macro domain-containing protein in sno 5'region;... 38.1 38.1 6% 0.28 30.43 Q9EYI6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 39.7 39.7 9% 0.29 23.63 P26627.1 RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName:... 39.3 39.3 7% 0.30 28.67 Q922B1.2 RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName:... 39.3 39.3 5% 0.35 34.82 A1Z1Q3.2 RecName: Full=Uncharacterized protein Mb1934c [Mycobacterium... 38.5 38.5 4% 0.50 29.11 Q7TZB9.1 RecName: Full=Uncharacterized protein Rv1899c [Mycobacterium... 38.5 38.5 4% 0.50 29.11 P9WK29.1 RecName: Full=Uncharacterized protein MT1950 [Mycobacterium... 38.5 38.5 4% 0.52 29.11 P9WK28.1 RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName:... 38.1 38.1 7% 0.61 27.33 Q2KHU5.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 38.9 38.9 10% 0.62 23.68 Q99IE7.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 38.9 38.9 10% 0.63 23.68 Q99IE5.1 RecName: Full=Macro domain-containing protein mll7730... 37.0 37.0 8% 0.69 29.59 Q985D2.1 RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName:... 38.1 38.1 5% 0.72 34.82 Q3UYG8.1 RecName: Full=O-acetyl-ADP-ribose deacetylase 2; AltName:... 36.6 36.6 5% 0.80 29.01 E1PL40.1 RecName: Full=Trigger factor; Short=TF; AltName: Full=PPIase... 37.4 37.4 6% 1.2 25.90 Q180E9.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 37.7 37.7 11% 1.4 23.14 Q6X2U2.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 37.0 37.0 9% 2.3 23.47 Q86500.2 RecName: Full=Macro domain-containing protein in non 5'region;... 35.0 35.0 5% 3.4 29.13 Q9KHE2.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 36.2 36.2 5% 4.0 31.19 Q86924.3 RecName: Full=DNA-directed RNA polymerase subunit beta';... 36.2 36.2 4% 4.2 28.26 Q07KK8.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 35.8 35.8 7% 5.1 28.85 Q8JJX1.1 RecName: Full=5'-3' exoribonuclease 2 [Aspergillus nidulans FG... 35.4 35.4 3% 5.5 28.79 Q5BFH3.3 RecName: Full=50S ribosomal protein L11 [Methylococcus... 33.9 33.9 5% 5.7 31.19 Q60A10.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... 35.4 35.4 9% 6.1 24.49 Q9J6K9.2 RecName: Full=Uncharacterized protein APE_1648.1 [Aeropyrum... 34.3 34.3 2% 6.3 33.33 Q9YBE9.2 RecName: Full=Macro domain-containing protein DR_2288... 33.9 33.9 5% 6.6 23.81 Q9RS39.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 35.4 35.4 5% 7.2 30.28 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... 35.0 35.0 7% 7.9 28.85 Q8QL53.1 RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName:... 33.1 33.1 3% 8.4 31.82 Q8HEC0.2 RecName: Full=Protein mono-ADP-ribosyltransferase PARP15;... 34.7 34.7 3% 8.7 36.49 Q460N3.2 RecName: Full=DNA-directed RNA polymerase subunit beta';... 35.0 35.0 4% 9.1 28.26 Q211D9.1 RecName: Full=Uncharacterized protein TK1890 [Thermococcus... 33.5 33.5 5% 9.3 34.38 Q5JER1.1 RecName: Full=Tubby-like F-box protein 3; Short=OsTLP3; AltNam... 34.7 34.7 6% 9.4 29.93 Q8LJA9.1 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6U8.1 Length: 4382 Range 1: 819 to 2740 Score:3993 bits(10355), Expect:0.0, Method:Compositional matrix adjust., Identities:1922/1922(100%), Positives:1922/1922(100%), Gaps:0/1922(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 121 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT 180 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT 998 Query 181 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN 240 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN Sbjct 999 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN 1058 Query 241 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS 300 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS Sbjct 1059 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS 1118 Query 301 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA Sbjct 1119 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 1178 Query 361 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK 420 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK Sbjct 1179 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK 1238 Query 421 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV 480 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV Sbjct 1239 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV 1298 Query 481 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA 540 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA Sbjct 1299 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA 1358 Query 541 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN 600 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN Sbjct 1359 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN 1418 Query 601 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV 660 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV Sbjct 1419 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV 1478 Query 661 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS 720 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS Sbjct 1479 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS 1538 Query 721 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 780 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL Sbjct 1539 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 1598 Query 781 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL 840 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL Sbjct 1599 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL 1658 Query 841 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL 900 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL Sbjct 1659 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL 1718 Query 901 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE 960 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE Sbjct 1719 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE 1778 Query 961 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG 1020 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG Sbjct 1779 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG 1838 Query 1021 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP 1080 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP Sbjct 1839 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP 1898 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK 1140 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK Sbjct 1899 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK 1958 Query 1141 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC 1200 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC Sbjct 1959 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC 2018 Query 1201 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE 1260 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE Sbjct 2019 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE 2078 Query 1261 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA 1320 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA Sbjct 2079 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA 2138 Query 1321 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP 1380 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP Sbjct 2139 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP 2198 Query 1381 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF 1440 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF Sbjct 2199 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF 2258 Query 1441 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL 1500 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL Sbjct 2259 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL 2318 Query 1501 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM 1560 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM Sbjct 2319 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM 2378 Query 1561 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG 1620 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG Sbjct 2379 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG 2438 Query 1621 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF 1680 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF Sbjct 2439 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF 2498 Query 1681 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG 1740 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG Sbjct 2499 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG 2558 Query 1741 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV 1800 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV Sbjct 2559 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV 2618 Query 1801 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA 1860 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA Sbjct 2619 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA 2678 Query 1861 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK 1920 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK Sbjct 2679 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK 2738 Query 1921 GG 1922 GG Sbjct 2739 GG 2740 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 819 to 2740 Score:3986 bits(10337), Expect:0.0, Method:Compositional matrix adjust., Identities:1922/1922(100%), Positives:1922/1922(100%), Gaps:0/1922(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 121 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT 180 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPT 998 Query 181 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN 240 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN Sbjct 999 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATN 1058 Query 241 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS 300 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS Sbjct 1059 GAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNS 1118 Query 301 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA Sbjct 1119 QDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 1178 Query 361 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK 420 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK Sbjct 1179 PKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGK 1238 Query 421 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV 480 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV Sbjct 1239 LYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPV 1298 Query 481 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA 540 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA Sbjct 1299 DEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHA 1358 Query 541 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN 600 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN Sbjct 1359 EETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLN 1418 Query 601 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV 660 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV Sbjct 1419 EPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFV 1478 Query 661 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS 720 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS Sbjct 1479 ETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLS 1538 Query 721 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 780 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL Sbjct 1539 LREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 1598 Query 781 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL 840 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL Sbjct 1599 PSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLL 1658 Query 841 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL 900 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL Sbjct 1659 ALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANL 1718 Query 901 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE 960 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE Sbjct 1719 ESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQE 1778 Query 961 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG 1020 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG Sbjct 1779 SSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKG 1838 Query 1021 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP 1080 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP Sbjct 1839 PVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP 1898 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK 1140 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK Sbjct 1899 NASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKK 1958 Query 1141 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC 1200 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC Sbjct 1959 GAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLAC 2018 Query 1201 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE 1260 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE Sbjct 2019 ESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE 2078 Query 1261 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA 1320 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA Sbjct 2079 NTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLA 2138 Query 1321 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP 1380 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP Sbjct 2139 QRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSP 2198 Query 1381 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF 1440 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF Sbjct 2199 KFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDF 2258 Query 1441 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL 1500 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL Sbjct 2259 CEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLL 2318 Query 1501 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM 1560 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM Sbjct 2319 GLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIM 2378 Query 1561 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG 1620 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG Sbjct 2379 DGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTG 2438 Query 1621 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF 1680 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF Sbjct 2439 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHF 2498 Query 1681 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG 1740 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG Sbjct 2499 VNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVG 2558 Query 1741 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV 1800 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV Sbjct 2559 DSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV 2618 Query 1801 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA 1860 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA Sbjct 2619 VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINA 2678 Query 1861 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK 1920 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK Sbjct 2679 QVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLK 2738 Query 1921 GG 1922 GG Sbjct 2739 GG 2740 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6T7.1 Length: 4380 Range 1: 819 to 2738 Score:3736 bits(9688), Expect:0.0, Method:Compositional matrix adjust., Identities:1826/1923(95%), Positives:1865/1923(96%), Gaps:4/1923(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP KGVTFGEDTV EVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDD+GEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 EEEEID-ETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEP 179 EEEE+ TCEHEYGTE+DY+GLPLEFGAS + ++VEE+EEEDWLDD E Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPEP--- 995 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 EEPVNQ TGYLKLTDNVAIKCVDIV+EAQ+ANPMVIVNAANIHLKHGGGVAGALNKAT Sbjct 996 LHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKAT 1055 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQKESD YIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN Sbjct 1056 NGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 1115 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQDILLAPLLSAGIFGAKPLQSLQ+CVQTVRTQVYI VNDK LYEQVVMDYLD+LKP+VE Sbjct 1116 SQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVE 1175 Query 360 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 419 APKQE P E K +EKSVVQK +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DING Sbjct 1176 APKQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDING 1235 Query 420 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 479 KLY DS+NMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP Sbjct 1236 KLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 1295 Query 480 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 539 ++EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PNAKEEILGTVSWNLREMLAH Sbjct 1296 INEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAH 1355 Query 540 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 599 AEETRKLMP+CMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1356 AEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1415 Query 600 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 659 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPA+VSVSSPDAVTTYNGYLTSSSKTSE+HF Sbjct 1416 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHF 1475 Query 660 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 719 VETVSLAGSYRDWSYSGQRTELGVEFLKRG+KIVYHTLESPV+FHLDGEVL LDKLKSLL Sbjct 1476 VETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLL 1535 Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFV Sbjct 1536 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFV 1595 Query 780 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 839 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1596 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1655 Query 840 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 899 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1656 LALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1715 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 959 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLK GVSIPCVCGRDATQYLVQQ Sbjct 1716 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQ 1775 Query 960 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1019 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK Sbjct 1776 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1835 Query 1020 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1079 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL+PTQPL Sbjct 1836 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPL 1895 Query 1080 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK Sbjct 1896 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1955 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA Sbjct 1956 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 2015 Query 1200 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 1259 CESQQPT EEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQEL HEDLMAAYV Sbjct 2016 CESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYV 2075 Query 1260 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 1319 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPW KILAYVKPFLGQAA+TTSNCAKRL Sbjct 2076 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRL 2135 Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 QR+FNNYMPYV TLLFQLCTFTKSTNSRIRASLPTTIAKNSV+ + +LCLDAGINYVKS Sbjct 2136 VQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKS 2195 Query 1380 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 1439 PKFSKLFTIAMWLLLLSICLGSLI VTAA GVLLSNFGAPSYC+GVRE YLNSSNVTTMD Sbjct 2196 PKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMD 2255 Query 1440 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 1499 FCEGSFPCS+CLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEW AYMLFTKFFYL Sbjct 2256 FCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYL 2315 Query 1500 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 1559 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI Sbjct 2316 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 2375 Query 1560 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 1619 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFC Sbjct 2376 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCA 2435 Query 1620 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 1679 GSTFISDEVARDLSLQFKRPINPTDQSSY+VDSVAVKNGALHLYFDKAGQKTYERHPLSH Sbjct 2436 GSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSH 2495 Query 1680 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 1739 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2496 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDV 2555 Query 1740 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1799 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQG Sbjct 2556 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSASRQG 2615 Query 1800 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1859 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2616 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2675 Query 1860 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1919 AQVA+SHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2676 AQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2735 Query 1920 KGG 1922 KGG Sbjct 2736 KGG 2738 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 819 to 2738 Score:3727 bits(9666), Expect:0.0, Method:Compositional matrix adjust., Identities:1826/1923(95%), Positives:1865/1923(96%), Gaps:4/1923(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP KGVTFGEDTV EVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDD+GEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 EEEEID-ETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEP 179 EEEE+ TCEHEYGTE+DY+GLPLEFGAS + ++VEE+EEEDWLDD E Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPEP--- 995 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 EEPVNQ TGYLKLTDNVAIKCVDIV+EAQ+ANPMVIVNAANIHLKHGGGVAGALNKAT Sbjct 996 LHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKAT 1055 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQKESD YIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN Sbjct 1056 NGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 1115 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQDILLAPLLSAGIFGAKPLQSLQ+CVQTVRTQVYI VNDK LYEQVVMDYLD+LKP+VE Sbjct 1116 SQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVE 1175 Query 360 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 419 APKQE P E K +EKSVVQK +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DING Sbjct 1176 APKQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDING 1235 Query 420 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 479 KLY DS+NMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP Sbjct 1236 KLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 1295 Query 480 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 539 ++EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PNAKEEILGTVSWNLREMLAH Sbjct 1296 INEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAH 1355 Query 540 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 599 AEETRKLMP+CMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1356 AEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1415 Query 600 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 659 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPA+VSVSSPDAVTTYNGYLTSSSKTSE+HF Sbjct 1416 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHF 1475 Query 660 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 719 VETVSLAGSYRDWSYSGQRTELGVEFLKRG+KIVYHTLESPV+FHLDGEVL LDKLKSLL Sbjct 1476 VETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLL 1535 Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFV Sbjct 1536 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFV 1595 Query 780 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 839 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1596 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1655 Query 840 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 899 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1656 LALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1715 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 959 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLK GVSIPCVCGRDATQYLVQQ Sbjct 1716 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQ 1775 Query 960 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1019 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK Sbjct 1776 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1835 Query 1020 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1079 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL+PTQPL Sbjct 1836 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPL 1895 Query 1080 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK Sbjct 1896 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1955 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA Sbjct 1956 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 2015 Query 1200 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 1259 CESQQPT EEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQEL HEDLMAAYV Sbjct 2016 CESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYV 2075 Query 1260 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 1319 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPW KILAYVKPFLGQAA+TTSNCAKRL Sbjct 2076 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRL 2135 Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 QR+FNNYMPYV TLLFQLCTFTKSTNSRIRASLPTTIAKNSV+ + +LCLDAGINYVKS Sbjct 2136 VQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKS 2195 Query 1380 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 1439 PKFSKLFTIAMWLLLLSICLGSLI VTAA GVLLSNFGAPSYC+GVRE YLNSSNVTTMD Sbjct 2196 PKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMD 2255 Query 1440 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 1499 FCEGSFPCS+CLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEW AYMLFTKFFYL Sbjct 2256 FCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYL 2315 Query 1500 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 1559 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI Sbjct 2316 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 2375 Query 1560 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 1619 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFC Sbjct 2376 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCA 2435 Query 1620 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 1679 GSTFISDEVARDLSLQFKRPINPTDQSSY+VDSVAVKNGALHLYFDKAGQKTYERHPLSH Sbjct 2436 GSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSH 2495 Query 1680 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 1739 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2496 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDV 2555 Query 1740 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1799 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQG Sbjct 2556 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSASRQG 2615 Query 1800 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1859 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2616 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2675 Query 1860 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1919 AQVA+SHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2676 AQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2735 Query 1920 KGG 1922 KGG Sbjct 2736 KGG 2738 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3] Sequence ID: P0C6F8.1 Length: 4376 Range 1: 819 to 2734 Score:3578 bits(9278), Expect:0.0, Method:Compositional matrix adjust., Identities:1754/1923(91%), Positives:1824/1923(94%), Gaps:8/1923(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 938 Query 121 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEP 179 +EEE E EYGTEDDY+GLPLEFGAS ET VEEEEEE DWLDD E Sbjct 939 DEEETCEH---EYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEP--- 992 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 PEEPVNQF GYLKLTDNVAIKC+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKAT Sbjct 993 LPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKAT 1052 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQ ESD+YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFN Sbjct 1053 NGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFN 1112 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQD+LLAPLLSAGIFGAKPLQSL++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE Sbjct 1113 SQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVE 1172 Query 360 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 419 +P +EE P E+ K + V +KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING Sbjct 1173 SPNKEEEPKLEEPKAVQ-PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 1231 Query 420 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 479 KLY DSQNMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP Sbjct 1232 KLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVP 1291 Query 480 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 539 V EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAH Sbjct 1292 VAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAH 1351 Query 540 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 599 AEETRKLMPIC+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1352 AEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1411 Query 600 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 659 NEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F Sbjct 1412 NEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYF 1471 Query 660 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 719 VET SLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLL Sbjct 1472 VETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLL 1531 Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 SLREVKTIKVFTTVDNTNLHT +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV Sbjct 1532 SLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 1591 Query 780 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 839 LPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1592 LPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1651 Query 840 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 899 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1652 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1711 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 959 LESAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQ Sbjct 1712 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 1771 Query 960 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1019 ESSFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYK Sbjct 1772 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYK 1831 Query 1020 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1079 GPVTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+ Sbjct 1832 GPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPM 1891 Query 1080 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 PNASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFK Sbjct 1892 PNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFK 1951 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 KGAKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLA Sbjct 1952 KGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLA 2011 Query 1200 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 1259 CESQ TSEEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYV Sbjct 2012 CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYV 2071 Query 1260 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 1319 E TSITIKKPNELSLALGLKT+ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ Sbjct 2072 EETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKC 2131 Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 QRVF+NYMPYV TLLFQLCTFTKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKS Sbjct 2132 VQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKS 2191 Query 1380 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 1439 PKFSKLFTI MWLLLLSICLGSL VTA GV LS+ G PSYC+GVRELY+NSSNVTTMD Sbjct 2192 PKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMD 2251 Query 1440 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 1499 FC+G FPCS+CLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYL Sbjct 2252 FCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 Query 1500 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 1559 LGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHI Sbjct 2312 LGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHI 2371 Query 1560 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 1619 MDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC Sbjct 2372 MDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCA 2431 Query 1620 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 1679 GSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSH Sbjct 2432 GSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSH 2491 Query 1680 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 1739 FVNLDNLRANNTKGSLPINVIVFDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2492 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 2551 Query 1740 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1799 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG Sbjct 2552 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 2611 Query 1800 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1859 VVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2612 VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2671 Query 1860 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1919 AQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2672 AQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2731 Query 1920 KGG 1922 KGG Sbjct 2732 KGG 2734 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 819 to 2734 Score:3568 bits(9253), Expect:0.0, Method:Compositional matrix adjust., Identities:1754/1923(91%), Positives:1824/1923(94%), Gaps:8/1923(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 938 Query 121 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEP 179 +EEE E EYGTEDDY+GLPLEFGAS ET VEEEEEE DWLDD E Sbjct 939 DEEETCEH---EYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEP--- 992 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 PEEPVNQF GYLKLTDNVAIKC+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKAT Sbjct 993 LPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKAT 1052 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQ ESD+YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFN Sbjct 1053 NGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFN 1112 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQD+LLAPLLSAGIFGAKPLQSL++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE Sbjct 1113 SQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVE 1172 Query 360 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 419 +P +EE P E+ K + V +KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING Sbjct 1173 SPNKEEEPKLEEPKAVQ-PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 1231 Query 420 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 479 KLY DSQNMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP Sbjct 1232 KLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVP 1291 Query 480 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 539 V EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAH Sbjct 1292 VAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAH 1351 Query 540 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 599 AEETRKLMPIC+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1352 AEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1411 Query 600 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 659 NEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F Sbjct 1412 NEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYF 1471 Query 660 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 719 VET SLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLL Sbjct 1472 VETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLL 1531 Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 SLREVKTIKVFTTVDNTNLHT +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV Sbjct 1532 SLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 1591 Query 780 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 839 LPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1592 LPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1651 Query 840 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 899 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1652 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1711 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 959 LESAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQ Sbjct 1712 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 1771 Query 960 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1019 ESSFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYK Sbjct 1772 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYK 1831 Query 1020 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1079 GPVTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+ Sbjct 1832 GPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPM 1891 Query 1080 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 PNASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFK Sbjct 1892 PNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFK 1951 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 KGAKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLA Sbjct 1952 KGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLA 2011 Query 1200 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 1259 CESQ TSEEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYV Sbjct 2012 CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYV 2071 Query 1260 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 1319 E TSITIKKPNELSLALGLKT+ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ Sbjct 2072 EETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKC 2131 Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 QRVF+NYMPYV TLLFQLCTFTKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKS Sbjct 2132 VQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKS 2191 Query 1380 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 1439 PKFSKLFTI MWLLLLSICLGSL VTA GV LS+ G PSYC+GVRELY+NSSNVTTMD Sbjct 2192 PKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMD 2251 Query 1440 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 1499 FC+G FPCS+CLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYL Sbjct 2252 FCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 Query 1500 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 1559 LGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHI Sbjct 2312 LGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHI 2371 Query 1560 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 1619 MDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC Sbjct 2372 MDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCA 2431 Query 1620 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 1679 GSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSH Sbjct 2432 GSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSH 2491 Query 1680 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 1739 FVNLDNLRANNTKGSLPINVIVFDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2492 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 2551 Query 1740 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1799 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG Sbjct 2552 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 2611 Query 1800 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1859 VVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2612 VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2671 Query 1860 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1919 AQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2672 AQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2731 Query 1920 KGG 1922 KGG Sbjct 2732 KGG 2734 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 819 to 2746 Score:3540 bits(9179), Expect:0.0, Method:Compositional matrix adjust., Identities:1742/1933(90%), Positives:1823/1933(94%), Gaps:16/1933(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 EEEEIDETCE-HEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEP 179 +EEEI E HEYGTEDDY+GLPLEFGAS E +++ +EE+ D E +PEPEP Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTE---IQQVDEEEEEDWLEEAIAAKPEPEP 995 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQ A P VIVNAAN+HLKHGGGVAGALNKAT Sbjct 996 LPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKAT 1055 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQ+ESDDYIK NGPLTVGGSCLLSGHNLAKKC+HVVGPNLNAGED+QLLKAAY NFN Sbjct 1056 NGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFN 1115 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQD+LLAPLLSAGIFGAKPLQSL++CV+TVRTQVY AVND+ LY+ VV+ YLD+LKP+VE Sbjct 1116 SQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVE 1175 Query 360 APKQE----------EPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTN 409 P QE E E+ + EE V++KPVDVK KA I+EV T+LEETKFLT+ Sbjct 1176 TPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTS 1233 Query 410 KLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTE 469 +LLLFADINGKLY DSQNMLRGEDM FLEKDAPY+VGDVI+SGDITCV+IP+KKAGGTTE Sbjct 1234 RLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTE 1293 Query 470 MLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTV 529 ML++ALKKVPV EYITTYPGQGCAGYTLEEAKTAL+KCKS FYVLPS+ PN KEEILGTV Sbjct 1294 MLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTV 1353 Query 530 SWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPV 589 SWNLREMLAHAEETRKLM ICMDV+A+M+TI R+YKGIK+QEGIVDYGVRFFFYTSKEPV Sbjct 1354 SWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPV 1413 Query 590 ASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 649 ASIITKLN LNEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT Sbjct 1414 ASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 1473 Query 650 SSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEV 709 SSSKTSEEHF+ETVSLAG YRDWSYSGQRTELGVEFLKRGDK+VYHT+ SP++FHLDGEV Sbjct 1474 SSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEV 1533 Query 710 LSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPH 769 L LDKLKSLLSLREV+TIKVFTTVDNTNLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1534 LLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPH 1593 Query 770 VNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWA 829 HEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQ+GGLTSIKWA Sbjct 1594 AKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWA 1653 Query 830 DNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRE 889 DNNCYLSSVLLALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRE Sbjct 1654 DNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRE 1713 Query 890 TMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCG 949 TMTHLLQHANLESAKRVLNVVCK CGQK+TTLTGVEAVMYMGTLSY+ LKTGV+IPC+CG Sbjct 1714 TMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICG 1773 Query 950 RDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDG 1009 RDATQYLVQQESSFVMMSAPP+EY LQQG FLCANEYTG+YQCGHYTH+T KETLYRIDG Sbjct 1774 RDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDG 1833 Query 1010 AHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQ 1069 A+LTKMSEYKGPVTDVFYKE SYTTTIKPVSYKLDGV YTEI+PKLD YYKKDNAYYTEQ Sbjct 1834 AYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQ 1893 Query 1070 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAI 1129 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF KPASRELSVTFFPDLNGDVVAI Sbjct 1894 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAI 1953 Query 1130 DYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAV 1189 DYRHYSASFKKGAKLLHKPI+WHINQ T KTT+KPNTWCLRCLWSTKPV+TSNSFEVL V Sbjct 1954 DYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEV 2013 Query 1190 EDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQEL 1249 EDTQGMDNLACESQ PTSEEVVENPTIQKEVIECDVKT EVVGNVILKPS+EGVKVTQEL Sbjct 2014 EDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQEL 2073 Query 1250 GHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAA 1309 GHEDLMAAYVE TSITIKKPNELSLALGL+T+ATHG AAINSVPWSKILAYVKPFLGQAA Sbjct 2074 GHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAA 2133 Query 1310 ITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLC 1369 +TT+NC KR QRVFNNYMPYV TLLFQLCTFT+STNSRIRASLPTTIAKNSVKSVAKLC Sbjct 2134 VTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLC 2193 Query 1370 LDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELY 1429 LD INYVKSPKFSKLFTIAMWLLLLSICLGSLI VTAAFGVLLSN G PSYC+GVRE Y Sbjct 2194 LDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESY 2253 Query 1430 LNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLA 1489 +NSSNVTTMDFCEGSF CS+CL+GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LA Sbjct 2254 VNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLA 2313 Query 1490 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASF 1549 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA Sbjct 2314 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFC 2373 Query 1550 YYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNW 1609 YY+WKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCK HNW Sbjct 2374 YYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNW 2433 Query 1610 NCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQ 1669 NCLNCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSY+VDSVAVKNGALHLYFDKAGQ Sbjct 2434 NCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQ 2493 Query 1670 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPIL 1729 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA+KSASVYYSQLMCQPIL Sbjct 2494 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPIL 2553 Query 1730 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1789 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL Sbjct 2554 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2613 Query 1790 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 1849 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA Sbjct 2614 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 2673 Query 1850 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1909 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV Sbjct 2674 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2733 Query 1910 VNVITTKISLKGG 1922 VN ITTKISLKGG Sbjct 2734 VNAITTKISLKGG 2746 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 819 to 2746 Score:3531 bits(9156), Expect:0.0, Method:Compositional matrix adjust., Identities:1742/1933(90%), Positives:1823/1933(94%), Gaps:16/1933(0%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 120 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 EEEEIDETCE-HEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEP 179 +EEEI E HEYGTEDDY+GLPLEFGAS E +++ +EE+ D E +PEPEP Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTE---IQQVDEEEEEDWLEEAIAAKPEPEP 995 Query 180 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 239 PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQ A P VIVNAAN+HLKHGGGVAGALNKAT Sbjct 996 LPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKAT 1055 Query 240 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 299 NGAMQ+ESDDYIK NGPLTVGGSCLLSGHNLAKKC+HVVGPNLNAGED+QLLKAAY NFN Sbjct 1056 NGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFN 1115 Query 300 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 SQD+LLAPLLSAGIFGAKPLQSL++CV+TVRTQVY AVND+ LY+ VV+ YLD+LKP+VE Sbjct 1116 SQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVE 1175 Query 360 APKQE----------EPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTN 409 P QE E E+ + EE V++KPVDVK KA I+EV T+LEETKFLT+ Sbjct 1176 TPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTS 1233 Query 410 KLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTE 469 +LLLFADINGKLY DSQNMLRGEDM FLEKDAPY+VGDVI+SGDITCV+IP+KKAGGTTE Sbjct 1234 RLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTE 1293 Query 470 MLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTV 529 ML++ALKKVPV EYITTYPGQGCAGYTLEEAKTAL+KCKS FYVLPS+ PN KEEILGTV Sbjct 1294 MLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTV 1353 Query 530 SWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPV 589 SWNLREMLAHAEETRKLM ICMDV+A+M+TI R+YKGIK+QEGIVDYGVRFFFYTSKEPV Sbjct 1354 SWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPV 1413 Query 590 ASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 649 ASIITKLN LNEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT Sbjct 1414 ASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 1473 Query 650 SSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEV 709 SSSKTSEEHF+ETVSLAG YRDWSYSGQRTELGVEFLKRGDK+VYHT+ SP++FHLDGEV Sbjct 1474 SSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEV 1533 Query 710 LSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPH 769 L LDKLKSLLSLREV+TIKVFTTVDNTNLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1534 LLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPH 1593 Query 770 VNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWA 829 HEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQ+GGLTSIKWA Sbjct 1594 AKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWA 1653 Query 830 DNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRE 889 DNNCYLSSVLLALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRE Sbjct 1654 DNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRE 1713 Query 890 TMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCG 949 TMTHLLQHANLESAKRVLNVVCK CGQK+TTLTGVEAVMYMGTLSY+ LKTGV+IPC+CG Sbjct 1714 TMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICG 1773 Query 950 RDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDG 1009 RDATQYLVQQESSFVMMSAPP+EY LQQG FLCANEYTG+YQCGHYTH+T KETLYRIDG Sbjct 1774 RDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDG 1833 Query 1010 AHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQ 1069 A+LTKMSEYKGPVTDVFYKE SYTTTIKPVSYKLDGV YTEI+PKLD YYKKDNAYYTEQ Sbjct 1834 AYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQ 1893 Query 1070 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAI 1129 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF KPASRELSVTFFPDLNGDVVAI Sbjct 1894 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAI 1953 Query 1130 DYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAV 1189 DYRHYSASFKKGAKLLHKPI+WHINQ T KTT+KPNTWCLRCLWSTKPV+TSNSFEVL V Sbjct 1954 DYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEV 2013 Query 1190 EDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQEL 1249 EDTQGMDNLACESQ PTSEEVVENPTIQKEVIECDVKT EVVGNVILKPS+EGVKVTQEL Sbjct 2014 EDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQEL 2073 Query 1250 GHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAA 1309 GHEDLMAAYVE TSITIKKPNELSLALGL+T+ATHG AAINSVPWSKILAYVKPFLGQAA Sbjct 2074 GHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAA 2133 Query 1310 ITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLC 1369 +TT+NC KR QRVFNNYMPYV TLLFQLCTFT+STNSRIRASLPTTIAKNSVKSVAKLC Sbjct 2134 VTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLC 2193 Query 1370 LDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELY 1429 LD INYVKSPKFSKLFTIAMWLLLLSICLGSLI VTAAFGVLLSN G PSYC+GVRE Y Sbjct 2194 LDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESY 2253 Query 1430 LNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLA 1489 +NSSNVTTMDFCEGSF CS+CL+GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LA Sbjct 2254 VNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLA 2313 Query 1490 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASF 1549 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA Sbjct 2314 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFC 2373 Query 1550 YYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNW 1609 YY+WKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCK HNW Sbjct 2374 YYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNW 2433 Query 1610 NCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQ 1669 NCLNCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSY+VDSVAVKNGALHLYFDKAGQ Sbjct 2434 NCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQ 2493 Query 1670 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPIL 1729 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA+KSASVYYSQLMCQPIL Sbjct 2494 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPIL 2553 Query 1730 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1789 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL Sbjct 2554 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2613 Query 1790 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 1849 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA Sbjct 2614 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 2673 Query 1850 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1909 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV Sbjct 2674 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2733 Query 1910 VNVITTKISLKGG 1922 VN ITTKISLKGG Sbjct 2734 VNAITTKISLKGG 2746 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 852 to 2831 Score:739 bits(1908), Expect:0.0, Method:Compositional matrix adjust., Identities:603/2042(30%), Positives:968/2042(47%), Gaps:182/2042(8%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 AP KGV FG + E+ ++V + +++ +D +L + + +TVE V +F VV Sbjct 852 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 911 Query 60 EAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 + V++ L + G DL++++ Y+++ G+ +SS M S P EE + E Sbjct 912 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNP---VEEVEEE 968 Query 120 CEEEEI-DETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPE 178 C+++ + DE E E+D + A+ E V E+ + D L + SE Sbjct 969 CDDDYVEDEYLSEEMLVEEDEN----SWAAAVEAVIPMEDVQLDTLVAEIDVSE------ 1018 Query 179 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVN-----AANIHLKHGGGVAG 233 P + V + T+ V + +++ +Q AN + + +++I L A Sbjct 1019 --PADDVAEQAS----TEEVEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAK 1072 Query 234 ALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKA 293 A + A ++ KL+ VG V + + + + Sbjct 1073 ANDCAEGMPALDSTETVSKLSVDTPVG---------------DVTQDDATSSNATVISED 1117 Query 294 AYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQ--VVMDYL 351 + +S+ ++ P + P ++L V+ +R+ V + +L ++ V++ Sbjct 1118 VHTATHSKGLVAVPEVV-------PEKALGTSVERMRSTSEWTVVETSLKQETAVIVKND 1170 Query 352 DNLKP-RVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNK 410 + KP RV+ PK E P V D +A D + T Sbjct 1171 SSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHG- 1229 Query 411 LLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGD-VITSGD-----ITCVVIPSKKA 464 I + S +++ E ++ P VGD + G I VV P +A Sbjct 1230 ----GGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARA 1285 Query 465 GGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSA-----FYVLPSE-- 517 ++L R K ++Y AG E + +L+ S + V+ SE Sbjct 1286 NQDIQLLKRCYKAF--NKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKV 1343 Query 518 -----APNAKEEI-LGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQE 571 AP + W R ++ +A+ IC D A ++ + + + Sbjct 1344 YNDLAAPKPPTGLTYSHEGW--RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKT 1401 Query 572 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPA 631 VD GV+++ Y+SK+P+ IIT N+ + + MPIGYVTHG +L +A + ++ + P Sbjct 1402 QTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPY 1459 Query 632 VVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRTELGVEF---LK 687 V ++S D V N + + +T E+ F+ TV G Y W +G+ GV + L Sbjct 1460 VCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLN 1517 Query 688 RGDKIV------YHTLESPVEFHLDGEVLSLDKLKSLLSLR--EVKTIKVFTTVDNTNLH 739 D+ + ++ ++ + D SL+K ++ L+ R + K + V T+D N Sbjct 1518 WSDQTICYADNKFYVVKGQIALPFD----SLEKCRTYLTSRAAQQKNVDVLVTIDGVNFR 1573 Query 740 TQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF---EYYHT 796 T +++ + TY Q G + G+D++ P G+ ++ +D+ +E E Y T Sbjct 1574 TVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL--ADNLSEAEKAVLSEVYGT 1631 Query 797 LDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL-EVKFNAPALQ 855 D +FL RY S L KKWK+ G+ S+K NNCY++ +L L L E+KF PALQ Sbjct 1632 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 1691 Query 856 EAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES-AKRVLNVVCKHC 914 AY + + GD+ F ALI+AY + T GE D + +L A L + AK V C C Sbjct 1692 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 1751 Query 915 GQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYK 974 G + TT TG++A +Y+G S D L C CG + LV+ + ++++S Sbjct 1752 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 1811 Query 975 LQQGTFLCANEYTG-------NYQCGHYTHITAKETL-YRIDGAHLTKMSEYKGPVTDVF 1026 + + +YT GHY H+ K+ L Y+ D L+K S+ K +TDV+ Sbjct 1812 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1871 Query 1027 YKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQPLPNASFD 1085 Y + Y+ V Y LDG T+ +++P L +Y KD Y+T++P I+ P L + + Sbjct 1872 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1931 Query 1086 NFKLTCSNTKFADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAIDYRHYSASF 1138 N L + D N + GF +KP S++L+ +FFPD GDV+ +Y Y + Sbjct 1932 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1991 Query 1139 KKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNL 1198 K GA L KPI+W N K N LR ++ PV N + VL Q ++ Sbjct 1992 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 2051 Query 1199 AC-ESQQPTSE-EVVENPTIQKEVIECD-VKTTEVVGNVILKPSDEGVKVTQELGHEDLM 1255 A E +P S +V E+ + +I+C +K V +GV V LG +DL Sbjct 2052 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 2111 Query 1256 AAYVE-NTSITIKKPNELSLALGLKTIATHG---IAAINSVPWS-KILAYVKPFLGQAAI 1310 A YV+ N + + K N S + T+ IAA S+ KIL Q A Sbjct 2112 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 2171 Query 1311 TTSNCAK-------RLAQRVFNN--YMPYVFTLLFQLC----TFTKSTN-SRIRASLPTT 1356 T N R+ + V N + F LL L TF KS N S ++ + Sbjct 2172 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 2231 Query 1357 IAKNSVKS-VAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSIC----------------- 1398 V + V K C A + V KF ++ + LL IC Sbjct 2232 RTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQ 2290 Query 1399 -LGSLICVTAAFGVLL------SNFGAPSYCNGVRELYLNSSNVTTMDFCEG-SFPCSIC 1450 L S + + A G+L S G S C+G+ E Y N S DFC S C+ C Sbjct 2291 VLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVS-YDVNDFCSNRSALCNWC 2349 Query 1451 LSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFF 1510 L G DSL Y A + IQ ++SY +++ + E+ LAY+L+T F +L L Q FF Sbjct 2350 LIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFF 2409 Query 1511 GYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTC 1568 Y + ++ S ++L+ V P+ +VR+Y F A +++ + Y H+++GC + C Sbjct 2410 SYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTAC 2469 Query 1569 MMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEV 1628 ++CYKRNR TRVE +T+V G KR+FY+ ANGG FC HNWNC++CDT G+TFI +EV Sbjct 2470 LLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEV 2529 Query 1629 ARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRA 1688 A DL+ +R + PTD+S Y V+SV VK+ + L++ + G YER+PL +F NLD L+ Sbjct 2530 ANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKF 2589 Query 1689 N---NTKGSLP-INVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTE 1744 T +P N +++D + E+ ++SA VYYSQ++ +P+LL+D +V+ VGDS E Sbjct 2590 KEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSRE 2649 Query 1745 VSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDT 1803 ++ KM D+YV++F + F V +KL LVATA + +G V+ TF AAR V++ Sbjct 2650 IASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVES 2709 Query 1804 DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVA 1863 DV+T +++ L+ ++ DL++T + NN++ +Y K +++ DLG ID NA +N Sbjct 2710 DVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSI 2769 Query 1864 KSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS---LK 1920 ++ N + IWN DYM LS+ L++QIR A +K NIPFRLT + R N+++ K S L Sbjct 2770 RNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLS 2829 Query 1921 GG 1922 GG Sbjct 2830 GG 2831 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 852 to 2831 Score:738 bits(1906), Expect:0.0, Method:Compositional matrix adjust., Identities:603/2042(30%), Positives:969/2042(47%), Gaps:182/2042(8%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 AP KGV FG + E+ ++V + +++ +D +L + + +TVE V +F VV Sbjct 852 APPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVK 911 Query 60 EAVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 + V++ L + G DL++++ Y+++ G+ +SS M S P EE + E Sbjct 912 DEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNP---VEEVEEE 968 Query 120 CEEEEI-DETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPE 178 C+++ + DE E E+D + A+ E V E+ + D L + SE Sbjct 969 CDDDYVEDEYLSEEMLVEEDEN----SWAAAVEAVIPMEDVQLDTLVAEIDVSE------ 1018 Query 179 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVN-----AANIHLKHGGGVAG 233 P + V + T+ V + +++ +Q AN + + +++I L A Sbjct 1019 --PADDVAEQAS----TEEVEVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAK 1072 Query 234 ALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKA 293 A + A ++ KL+ VG V + + + + Sbjct 1073 ANDCAEGMPALDSTETVSKLSVDTPVG---------------DVTQDDATSSNATVISED 1117 Query 294 AYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQ--VVMDYL 351 + +S+ ++ P + P ++L V+ +R+ V + +L ++ V++ Sbjct 1118 VHTATHSKGLVAVPEVV-------PEKALGTSVERMRSTSEWTVVETSLKQETAVIVKND 1170 Query 352 DNLKP-RVEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNK 410 + KP RV+ PK E P V D +A D + T Sbjct 1171 SSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHG- 1229 Query 411 LLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGD-VITSGD-----ITCVVIPSKKA 464 I + S +++ E ++ P VGD + G I VV P +A Sbjct 1230 ----GGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARA 1285 Query 465 GGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSA-----FYVLPSE-- 517 ++L R K ++Y AG E + +L+ S + V+ SE Sbjct 1286 NQDIQLLKRCYKAF--NKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKV 1343 Query 518 -----APNAKEEI-LGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQE 571 AP + W R ++ +A+ IC D A ++ + + + Sbjct 1344 YNDLAAPKPPTGLTYSHEGW--RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKT 1401 Query 572 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPA 631 VD GV+++ Y+SK+P+ IIT N+ + + MPIGYVTHG +L +A + ++ + P Sbjct 1402 QTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPY 1459 Query 632 VVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRTELGVEF---LK 687 V ++S D V N + + +T E+ F+ TV G Y W +G+ GV + L Sbjct 1460 VCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLN 1517 Query 688 RGDKIV------YHTLESPVEFHLDGEVLSLDKLKSLLSLR--EVKTIKVFTTVDNTNLH 739 D+ + ++ ++ + D SL+K ++ L+ R + K + V T+D N Sbjct 1518 WSDQTICYADNKFYVVKGQIALPFD----SLEKCRTYLTSRAAQQKNVDVLVTIDGVNFR 1573 Query 740 TQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF---EYYHT 796 T +++ + TY Q G + G+D++ P G+ ++ +D+ +E E Y T Sbjct 1574 TVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL--ADNLSEAEKAVLSEVYGT 1631 Query 797 LDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL-EVKFNAPALQ 855 D +FL RY S L KKWK+ G+ S+K NNCY++ +L L L E+KF PALQ Sbjct 1632 ADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQ 1691 Query 856 EAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES-AKRVLNVVCKHC 914 AY + + GD+ F ALI+AY + T GE D + +L A L + AK V C C Sbjct 1692 AAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVC 1751 Query 915 GQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYK 974 G + TT TG++A +Y+G S D L C CG + LV+ + ++++S Sbjct 1752 GVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLNEAKV 1811 Query 975 LQQGTFLCANEYTG-------NYQCGHYTHITAKETL-YRIDGAHLTKMSEYKGPVTDVF 1026 + + +YT GHY H+ K+ L Y+ D L+K S+ K +TDV+ Sbjct 1812 MTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVY 1871 Query 1027 YKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQPLPNASFD 1085 Y + Y+ V Y LDG T+ +++P L +Y KD Y+T++P I+ P L + + Sbjct 1872 YPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSGSVYT 1931 Query 1086 NFKL-----TCSNTKFADDLNQMTGF--TKPASRELSVTFFPDLNGDVVAIDYRHYSASF 1138 N L T + + N + GF +KP S++L+ +FFPD GDV+ +Y Y + Sbjct 1932 NSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTYDPIY 1991 Query 1139 KKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNL 1198 K GA L KPI+W N K N LR ++ PV N + VL Q ++ Sbjct 1992 KNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQVEVE 2051 Query 1199 AC-ESQQPTSE-EVVENPTIQKEVIECD-VKTTEVVGNVILKPSDEGVKVTQELGHEDLM 1255 A E +P S +V E+ + +I+C +K V +GV V LG +DL Sbjct 2052 APKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLR 2111 Query 1256 AAYVE-NTSITIKKPNELSLALGLKTIATHG---IAAINSVPWS-KILAYVKPFLGQAAI 1310 A YV+ N + + K N S + T+ IAA S+ KIL Q A Sbjct 2112 ALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFAQFAS 2171 Query 1311 TTSNCAK-------RLAQRVFNN--YMPYVFTLLFQLC----TFTKSTN-SRIRASLPTT 1356 T N R+ + V N + F LL L TF KS N S ++ + Sbjct 2172 VTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVEVGAL 2231 Query 1357 IAKNSVKS-VAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSIC----------------- 1398 V + V K C A + V KF ++ + LL IC Sbjct 2232 RTAGIVTTNVVKQCASAAYD-VLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQ 2290 Query 1399 -LGSLICVTAAFGVLL------SNFGAPSYCNGVRELYLNSSNVTTMDFCEG-SFPCSIC 1450 L S + + A G+L S G S C+G+ E Y N S DFC S C+ C Sbjct 2291 VLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVS-YDVNDFCSNRSALCNWC 2349 Query 1451 LSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFF 1510 L G DSL Y A + IQ ++SY +++ + E+ LAY+L+T F +L L Q FF Sbjct 2350 LIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQYFF 2409 Query 1511 GYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTC 1568 Y + ++ S ++L+ V P+ +VR+Y F A +++ + Y H+++GC + C Sbjct 2410 SYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDTAC 2469 Query 1569 MMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEV 1628 ++CYKRNR TRVE +T+V G KR+FY+ ANGG FC HNWNC++CDT G+TFI +EV Sbjct 2470 LLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICEEV 2529 Query 1629 ARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRA 1688 A DL+ +R + PTD+S Y V+SV VK+ + L++ + G YER+PL +F NLD L+ Sbjct 2530 ANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKLKF 2589 Query 1689 N---NTKGSLP-INVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTE 1744 T +P N +++D + E+ ++SA VYYSQ++ +P+LL+D +V+ VGDS E Sbjct 2590 KEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSRE 2649 Query 1745 VSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDT 1803 ++ KM D+YV++F + F V +KL LVATA + +G V+ TF AAR V++ Sbjct 2650 IASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGVES 2709 Query 1804 DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVA 1863 DV+T +++ L+ ++ DL++T + NN++ +Y K +++ DLG ID NA +N Sbjct 2710 DVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQTSI 2769 Query 1864 KSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS---LK 1920 ++ N + IWN DYM LS+ L++QIR A +K NIPFRLT + R N+++ K S L Sbjct 2770 RNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATKLS 2829 Query 1921 GG 1922 GG Sbjct 2830 GG 2831 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 1156 to 2733 Score:682 bits(1761), Expect:0.0, Method:Compositional matrix adjust., Identities:488/1613(30%), Positives:797/1613(49%), Gaps:146/1613(9%) Query 417 INGKLYHDSQNMLRGEDMSFLEKDAPYMVGD-VITSG-----DITCVVIPSKKAGGTTEM 470 I G + S+ ++ E ++ P VGD V+ G +I VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 471 LSRALKKVPVDEYITT-YPGQGCAG--------YTLEEAKTALKKCKSAFYVLPSEAPNA 521 LS+ K + + T G G Y + EAKT + ++ V S Sbjct 1216 LSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 1275 Query 522 KEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFF 581 + L LR + A++ + +C D A ++ K + VD GV+++ Sbjct 1276 IPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQYY 1334 Query 582 FYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAV 641 YTSK+ + I+ + N + +++MP+GYV+HG +L +A +R + P V +++ + Sbjct 1335 CYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQE 1393 Query 642 TTYNGYLTSSSKTS-EEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKI-------- 692 ++ K + E F++ V G Y W EL V+ L+ + Sbjct 1394 AIL---MSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLNKLLHWSDQTIC 1448 Query 693 ----VYHTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIKVFTTVDNTNLHTQLVDMS 746 V++ +++ F + +L ++ L R + TI+V TVD N T +++ Sbjct 1449 YKDSVFYVVKNSTAFPFE----TLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNK 1504 Query 747 MTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRSEAFEYYHTLDESFLG 803 TY Q G + +GAD++ P G + ++ L +D+T + E Y +D +FL Sbjct 1505 NTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALK--ELYGPVDPTFLH 1562 Query 804 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL-EVKFNAPALQEAYYRAR 862 R+ S KWK + S+K +DNNCYL++V++ L L ++KF PALQ A+ + + Sbjct 1563 RFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHK 1622 Query 863 AGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRVLNVVCKHCGQKTTTL 921 GD+ +F ALI+AY N T G D + +L A L SA+ V C CG K L Sbjct 1623 GGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVL 1682 Query 922 TGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGT-- 979 G++A Y+G + ++L+ ++ C CG + + +V+ + ++++S P E + T Sbjct 1683 QGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAP 1742 Query 980 -FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEYKGPVTDVFYKETSYTTTI 1036 F+ N + G GHY H K L + D ++K S++K VTDV + Y++ Sbjct 1743 DFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDC 1802 Query 1037 KPVSYKLDGVTYTEIEPKLDGYYKKDNAYYT-EQPIDLVPTQPLPNASFDNFKLTCSNTK 1095 V Y LDG TE++P L +Y KD Y+T E P+ P L + + N L S+ + Sbjct 1803 NVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQ 1862 Query 1096 FADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKP 1148 D N + GF +KP +++ + +F P +GDV+ ++ Y +K GA KP Sbjct 1863 PGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKP 1922 Query 1149 IVWHINQATTKTTF-KPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTS 1207 I+W +N+A+ T K N LR ++ P++ N F L+VE T P Sbjct 1923 ILW-VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 1208 EEVVENPTIQKE--VIECD-VKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE-NTS 1263 V+ +Q+E +++C + V NV D G V + L EDL YV+ Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 1264 ITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAI------------- 1310 + + K N LS L L T+ + IN V S L L +A+ Sbjct 2030 VIVLKDNVLSSMLRLHTVES---GDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTAT 2086 Query 1311 -TTSNCAKRLAQRV---------FNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTT---I 1357 +C K + + + +++ +F L + +K + ++ S T + Sbjct 2087 TAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVV 2146 Query 1358 AKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSN-- 1415 N VK +D ++ ++ + + + L + L S+ + VL S+ Sbjct 2147 TGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVM 2206 Query 1416 -----------------FGAPSYCNGVRELY-LNSSNVTTMDFCEG-SFPCSICLSGLDS 1456 G S C+G+ Y NS +V T FC S C+ CL DS Sbjct 2207 FEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--FCANRSAMCNWCLISQDS 2264 Query 1457 LDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGY---- 1512 + YPAL+ +Q +S Y L++ L A E LAYML+T F L L+ + FF Sbjct 2265 ITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIF 2324 Query 1513 --FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMM 1570 + S+ + S W I P++ +VRMY A + + K Y H+++GC + C++ Sbjct 2325 VDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLL 2380 Query 1571 CYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVAR 1630 CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++CDT G+TFI +EVA Sbjct 2381 CYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVAN 2440 Query 1631 DLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLR--- 1687 DL+ +RPIN TD+S Y VDSV VK + + + GQ YER PL F NLD L+ Sbjct 2441 DLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKE 2500 Query 1688 -ANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 1746 T G N I++D + ES ++SA VYYSQ++C+ ILL+D +LV+ VGDS+E++ Sbjct 2501 VCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIA 2560 Query 1747 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDTDV 1805 KMFD++V++F + ++V +KL+ L++TA + +G VL+TF+ AAR V++DV Sbjct 2561 TKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDV 2620 Query 1806 DTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKS 1865 +T ++++ ++ +H D+++T +S NN++ +Y K ++++ DLG+ IDCNA +N V ++ Sbjct 2621 ETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRN 2680 Query 1866 HNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS 1918 N + IWN YM LS+ L++QIR A +K N+ FRLT + R N+++ + + Sbjct 2681 SNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 854 to 1273 Score:189 bits(479), Expect:2e-46, Method:Compositional matrix adjust., Identities:138/424(33%), Positives:204/424(48%), Gaps:80/424(18%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 AP+K V FG D V EV ++V + + + +D +L + + V+ + EFA VV Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 60 EAVVKTLQPVSDLLTNMGI---DLDEWSVATFYLFDDAGEENFSSRMYCSFYPP--DEE- 113 E V L LL M I DLD++ A Y F+ G+ ++SS M S +P DEE Sbjct 914 EQVSDLL---VKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEEC 970 Query 114 --------EEDDAECEEEEIDETCEHEYGTEDDY------QGLPLEFGASAETVRVEEEE 159 EE ++EC E E + + DD + PL+ A T V+EE Sbjct 971 SEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQEEA 1029 Query 160 E--------------EDWLDDT---TEQSEIEPEPEPTPEEP------------------ 184 + D L +T ++ E+ P+ P EP Sbjct 1030 QPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADT 1089 Query 185 ------------------VNQFTGYLK--LTDNVAIKCVDIVKEAQSANPMVIVNAANIH 224 V+ + + +T+ V I D ++ A+ V+VNAAN H Sbjct 1090 EQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTH 1149 Query 225 LKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNA 284 LKHGGG+AGA+N A+ GA+QKESD+YI GPL VG S LL GH+LAK LHVVGP+ A Sbjct 1150 LKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARA 1209 Query 285 GEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYE 344 +D+ LL Y+ N+ +++ PL+SAGIFG KP S ++ +T+V + VN + +Y+ Sbjct 1210 KQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYK 1269 Query 345 QVVM 348 + + Sbjct 1270 SLTI 1273 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 1156 to 2733 Score:681 bits(1758), Expect:0.0, Method:Compositional matrix adjust., Identities:488/1613(30%), Positives:797/1613(49%), Gaps:146/1613(9%) Query 417 INGKLYHDSQNMLRGEDMSFLEKDAPYMVGD-VITSG-----DITCVVIPSKKAGGTTEM 470 I G + S+ ++ E ++ P VGD V+ G +I VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 471 LSRALKKVPVDEYITT-YPGQGCAG--------YTLEEAKTALKKCKSAFYVLPSEAPNA 521 LS+ K + + T G G Y + EAKT + ++ V S Sbjct 1216 LSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 1275 Query 522 KEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFF 581 + L LR + A++ + +C D A ++ K + VD GV+++ Sbjct 1276 IPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQYY 1334 Query 582 FYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAV 641 YTSK+ + I+ + N + +++MP+GYV+HG +L +A +R + P V +++ + Sbjct 1335 CYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQE 1393 Query 642 TTYNGYLTSSSKTS-EEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKI-------- 692 ++ K + E F++ V G Y W EL V+ L+ + Sbjct 1394 AIL---MSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLNKLLHWSDQTIC 1448 Query 693 ----VYHTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIKVFTTVDNTNLHTQLVDMS 746 V++ +++ F + +L ++ L R + TI+V TVD N T +++ Sbjct 1449 YKDSVFYVVKNSTAFPFE----TLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNK 1504 Query 747 MTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRSEAFEYYHTLDESFLG 803 TY Q G + +GAD++ P G + ++ L +D+T + E Y +D +FL Sbjct 1505 NTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALK--ELYGPVDPTFLH 1562 Query 804 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL-EVKFNAPALQEAYYRAR 862 R+ S KWK + S+K +DNNCYL++V++ L L ++KF PALQ A+ + + Sbjct 1563 RFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHK 1622 Query 863 AGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRVLNVVCKHCGQKTTTL 921 GD+ +F ALI+AY N T G D + +L A L SA+ V C CG K L Sbjct 1623 GGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVL 1682 Query 922 TGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGT-- 979 G++A Y+G + ++L+ ++ C CG + + +V+ + ++++S P E + T Sbjct 1683 QGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAP 1742 Query 980 -FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEYKGPVTDVFYKETSYTTTI 1036 F+ N + G GHY H K L + D ++K S++K VTDV + Y++ Sbjct 1743 DFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDC 1802 Query 1037 KPVSYKLDGVTYTEIEPKLDGYYKKDNAYYT-EQPIDLVPTQPLPNASFDNFKLTCSNTK 1095 V Y LDG TE++P L +Y KD Y+T E P+ P L + + N L S+ + Sbjct 1803 NVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQ 1862 Query 1096 FADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKP 1148 D N + GF +KP +++ + +F P +GDV+ ++ Y +K GA KP Sbjct 1863 PGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKP 1922 Query 1149 IVWHINQATTKTTF-KPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTS 1207 I+W +N+A+ T K N LR ++ P++ N F L+VE T P Sbjct 1923 ILW-VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 1208 EEVVENPTIQKE--VIECD-VKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVE-NTS 1263 V+ +Q+E +++C + V NV D G V + L EDL YV+ Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 1264 ITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAI------------- 1310 + + K N LS L L T+ + IN V S L L +A+ Sbjct 2030 VIVLKDNVLSSMLRLHTVES---GDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTAT 2086 Query 1311 -TTSNCAKRLAQRV---------FNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTT---I 1357 +C K + + + +++ +F L + +K + ++ S T + Sbjct 2087 TAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVV 2146 Query 1358 AKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSN-- 1415 N VK +D ++ ++ + + + L + L S+ + VL S+ Sbjct 2147 TGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVM 2206 Query 1416 -----------------FGAPSYCNGVRELY-LNSSNVTTMDFCEG-SFPCSICLSGLDS 1456 G S C+G+ Y NS +V T FC S C+ CL DS Sbjct 2207 FEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--FCANRSAMCNWCLISQDS 2264 Query 1457 LDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGY---- 1512 + YPAL+ +Q +S Y L++ L A E LAYML+T F L L+ + FF Sbjct 2265 ITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIF 2324 Query 1513 --FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMM 1570 + S+ + S W I P++ +VRMY A + + K Y H+++GC + C++ Sbjct 2325 VDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLL 2380 Query 1571 CYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVAR 1630 CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++CDT G+TFI +EVA Sbjct 2381 CYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVAN 2440 Query 1631 DLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLR--- 1687 DL+ +RPIN TD+S Y VDSV VK + + + GQ YER PL F NLD L+ Sbjct 2441 DLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKE 2500 Query 1688 -ANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 1746 T G N I++D + ES ++SA VYYSQ++C+ ILL+D +LV+ VGDS+E++ Sbjct 2501 VCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIA 2560 Query 1747 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGV-VDTDV 1805 KMFD++V++F + ++V +KL+ L++TA + +G VL+TF+ AAR V++DV Sbjct 2561 TKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDV 2620 Query 1806 DTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKS 1865 +T ++++ ++ +H D+++T +S NN++ +Y K ++++ DLG+ IDCNA +N V ++ Sbjct 2621 ETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRN 2680 Query 1866 HNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS 1918 N + IWN YM LS+ L++QIR A +K N+ FRLT + R N+++ + + Sbjct 2681 SNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 854 to 1273 Score:188 bits(477), Expect:3e-46, Method:Compositional matrix adjust., Identities:138/424(33%), Positives:204/424(48%), Gaps:80/424(18%) Query 1 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 AP+K V FG D V EV ++V + + + +D +L + + V+ + EFA VV Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 60 EAVVKTLQPVSDLLTNMGI---DLDEWSVATFYLFDDAGEENFSSRMYCSFYPP--DEE- 113 E V L LL M I DLD++ A Y F+ G+ ++SS M S +P DEE Sbjct 914 EQVSDLL---VKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEEC 970 Query 114 --------EEDDAECEEEEIDETCEHEYGTEDDY------QGLPLEFGASAETVRVEEEE 159 EE ++EC E E + + DD + PL+ A T V+EE Sbjct 971 SEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQEEA 1029 Query 160 E--------------EDWLDDT---TEQSEIEPEPEPTPEEP------------------ 184 + D L +T ++ E+ P+ P EP Sbjct 1030 QPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADT 1089 Query 185 ------------------VNQFTGYLK--LTDNVAIKCVDIVKEAQSANPMVIVNAANIH 224 V+ + + +T+ V I D ++ A+ V+VNAAN H Sbjct 1090 EQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTH 1149 Query 225 LKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNA 284 LKHGGG+AGA+N A+ GA+QKESD+YI GPL VG S LL GH+LAK LHVVGP+ A Sbjct 1150 LKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARA 1209 Query 285 GEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYE 344 +D+ LL Y+ N+ +++ PL+SAGIFG KP S ++ +T+V + VN + +Y+ Sbjct 1210 KQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYK 1269 Query 345 QVVM 348 + + Sbjct 1270 SLTI 1273 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6T6.1 Length: 4248 Range 1: 1216 to 2610 Score:672 bits(1735), Expect:0.0, Method:Compositional matrix adjust., Identities:451/1455(31%), Positives:730/1455(50%), Gaps:117/1455(8%) Query 525 ILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDY-GVRFFFY 583 ++ VS + M+ +E L+P+ +D A + ++R +EG+ G F+ Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 584 TSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTT 643 + +P+ + LNSL PL+ +P G++ +G L +A MR L P V V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 644 YNGYLT---SSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVE------FLKRGDKIVY 694 Y Y S T+ + FV + L G+ RDW +T V+ KRG+ Y Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTICKRGNT--Y 1386 Query 695 HTLESPVEFHLDGEVL----SLDKLKSLLSLREVKT---IKVFTTVDNTNLHTQLVDMSM 747 + + + G+V+ ++ K ++ L + IKV TTVD N T LV + Sbjct 1387 LCFDDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQ 1446 Query 748 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYYHTLDESFLGRYM 806 +Y Q G + DG D + P EG + + + A EYY D + + R M Sbjct 1447 SYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAM 1506 Query 807 SALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDA 866 S + W + V G + D+NCYL+ + LQ ++V F+ P + AY + G+ Sbjct 1507 SIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNP 1566 Query 867 ANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEA 926 +++A T G D ++ +L H + +A+RV+ VC+HCG TG +A Sbjct 1567 LPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDA 1625 Query 927 VMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQ-QGTFLCANE 985 + G++ D+L VS+ C CGR A +Y+ +Q+S +++MS P + L G + A Sbjct 1626 CTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIV 1685 Query 986 YTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDG 1045 + G GHY + + D + S+ K P TD+ Y TS+T+ K +Y LDG Sbjct 1686 FRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDG 1745 Query 1046 VTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLT-CSNTKFADDLNQMT 1104 V T I+P Y K+ + Y+T PI++V P S+D F L+ C N + A+ N+ Sbjct 1746 VKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESFNKAI 1804 Query 1105 GFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKP 1164 TK +L +T +P++ GDVVAI + A G+ + KP+++ +P Sbjct 1805 NATKTGPMKL-LTMYPNVAGDVVAISDDNVVAH-PYGSLHMGKPVLF---------VTRP 1853 Query 1165 NTWC-LRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIEC 1223 NTW L L ST V+T N+++VLAV+ P + E E P K I Sbjct 1854 NTWKKLVPLLSTVVVNTPNTYDVLAVDPL------------PVNNETSEEPISVKAPIPL 1901 Query 1224 -DVKTTEVVGNVILKPSDEG-VKVTQELGHEDLMAAYVENTS-ITIKKPNELSLALGLKT 1280 +K T V+ P ++G + +E DL YVE + K + LS LGL+ Sbjct 1902 YGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV 1961 Query 1281 IATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTL-LFQLC 1339 + +N + + AY A RL RV + + + T + + Sbjct 1962 --SDSSLHVNHLSKGVVYAYA--------------ATRLTTRVTTSLLGGLVTRSVRKTA 2005 Query 1340 TFTKSTNS------------RIRASLPTTIAKNSVKSVAKL-CLDAG-------INYVKS 1379 F +STN ++ + K + V+ + + G +NY++S Sbjct 2006 DFVRSTNPGSKCVGLLCLFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRS 2065 Query 1380 -------PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELY--L 1430 + KL +++ + CL IC GV LS APS + + Sbjct 2066 RCGNISWSRLLKLLRYMLYIWFVWTCL--TIC-----GVWLSEPYAPSLVTRFKYFLGIV 2118 Query 1431 NSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAY 1490 + ++ + +C++G+DSLD YPAL Q S + T + + E AY Sbjct 2119 MPCDYVLVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAY 2176 Query 1491 MLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFY 1550 +L+T ++G+ A++ + Y + NSWL+ F+ I+++ P ++M+RMYI A + Sbjct 2177 LLYTPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLW 2235 Query 1551 YIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWN 1610 +K ++H+ GC + C+MCYK+N A R+EC+T+VNG+KR FYV ANGG FC HNWN Sbjct 2236 LCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWN 2295 Query 1611 CLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQK 1670 C++CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ+ Sbjct 2296 CVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQR 2355 Query 1671 TYERHPLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCDESASKSASVYYSQLMCQPIL 1729 +YER P+ F N+ L + KG+ P NV+VFD ++ +E+A K+A++YY+QL C+PIL Sbjct 2356 SYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPIL 2415 Query 1730 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1789 L+D+ +V VGD ++ MF+AY + +S+ M+K+K L +TA +++ G+ ++ VL Sbjct 2416 LVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVL 2475 Query 1790 STFVSAARQGVVD--TDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDL 1847 FV + R D +DVDT D++ C++L H E T DS NN + TY K + ++ ++ Sbjct 2476 KVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEV 2535 Query 1848 GACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR 1907 G + NA+++NA +AK V+LIW D++ LSE +R+Q++ AA+K + +T ++ + Sbjct 2536 GQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLK 2595 Query 1908 QVVNVITTKISLKGG 1922 V + T + GG Sbjct 2596 ADVPCMVTPFKIIGG 2610 Range 2: 774 to 1103 Score:200 bits(508), Expect:7e-50, Method:Compositional matrix adjust., Identities:132/364(36%), Positives:198/364(54%), Gaps:43/364(11%) Query 3 IKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + VTFG++ V + V ++++ E +D +L++ + + VE GT++ + ACVV +AV Sbjct 774 VSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAV 833 Query 63 VKTLQPVSDLLTN-----MGIDLDEWSVATFYLFDDAGEENFSSRMYCSF---YPPDEEE 114 + L SDL ++ I+L+++ + +++ E+ MY S P D+E Sbjct 834 YERL---SDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEM 890 Query 115 EDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIE 174 DD I++T E ++D + G +E ED D+T + ++ Sbjct 891 VDD-------IEDTVEQASDSDDQWLG---------------DEGAED-CDNTIQDVDVA 927 Query 175 PEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGA 234 TP GY K+ ++V IKC DIV+EA++ + V+VNAAN++L HGGGVAGA Sbjct 928 TS-MTTP-------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGA 979 Query 235 LNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK-CLHVVGPNLNAGEDIQLLKA 293 LN+ATN AMQKES +YIK NG L GG LLS H LA LHVVGP+ G+D+ LL A Sbjct 980 LNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGPDKRLGQDLALLDA 1039 Query 294 AYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDN 353 Y + D +L PL+SAGIFG +SL V+ V Y+ V D+ LYE+ + D Sbjct 1040 VYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDRQLYERALATSFDV 1099 Query 354 LKPR 357 P+ Sbjct 1100 PGPQ 1103 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 1216 to 2610 Score:671 bits(1730), Expect:0.0, Method:Compositional matrix adjust., Identities:449/1455(31%), Positives:732/1455(50%), Gaps:117/1455(8%) Query 525 ILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDY-GVRFFFY 583 ++ VS + M+ +E L+P+ +D A + ++R +EG+ G F+ Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 584 TSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTT 643 + +P+ + LNSL PL+ +P G++ +G L +A MR L P V V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 644 YNGYLT---SSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVE------FLKRGDKIVY 694 Y Y S T+ + FV + L G+ RDW +T V+ KRG+ Y Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTICKRGN--TY 1386 Query 695 HTLESPVEFHLDGEVL----SLDKLKSLLSLREVKT---IKVFTTVDNTNLHTQLVDMSM 747 + + + G+V+ ++ K ++ L + IKV TTVD N T LV + Sbjct 1387 LCFDDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQ 1446 Query 748 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYYHTLDESFLGRYM 806 +Y Q G + DG D + P EG + + + A EYY D + + R M Sbjct 1447 SYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAM 1506 Query 807 SALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDA 866 S + W + V G + D+NCYL+ + LQ ++V F+ P + AY + G+ Sbjct 1507 SIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNP 1566 Query 867 ANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEA 926 +++A T G D ++ +L H + +A+RV+ VC+HCG TG +A Sbjct 1567 LPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDA 1625 Query 927 VMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQ-QGTFLCANE 985 + G++ D+L VS+ C CGR A +Y+ +Q+S +++MS P + L G + A Sbjct 1626 CTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIV 1685 Query 986 YTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDG 1045 + G GHY + + D + S+ K P TD+ Y TS+T+ K +Y LDG Sbjct 1686 FRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDG 1745 Query 1046 VTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLT-CSNTKFADDLNQMT 1104 V T I+P Y K+ + Y+T PI++V P S+D F L+ C N + A+ N+ Sbjct 1746 VKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESFNKAI 1804 Query 1105 GFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKP 1164 TK +L +T +P++ GDVVAI + A G+ + KP+++ +P Sbjct 1805 NATKTGPMKL-LTMYPNVAGDVVAISDDNVVAH-PYGSLHMGKPVLF---------VTRP 1853 Query 1165 NTWC-LRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENP-TIQKEVIE 1222 NTW L L ST V+T N+++VLAV+ P + E E P +++ + Sbjct 1854 NTWKKLVPLLSTVVVNTPNTYDVLAVDPL------------PVNNETSEEPISVKAPIPL 1901 Query 1223 CDVKTTEVVGNVILKPSDEG-VKVTQELGHEDLMAAYVENTS-ITIKKPNELSLALGLKT 1280 +K T V+ P ++G + +E DL YVE + K + LS LGL+ Sbjct 1902 YGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV 1961 Query 1281 IATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTL-LFQLC 1339 + +N + + AY A RL RV + + + T + + Sbjct 1962 --SDSSLHVNHLSKGVVYAYA--------------ATRLTTRVTTSLLGGLVTRSVRKTA 2005 Query 1340 TFTKSTNS------------RIRASLPTTIAKNSVKSVAKL-CLDAG-------INYVKS 1379 F +STN ++ + K + V+ + + G +NY++S Sbjct 2006 DFVRSTNPGSKCVGLLCLFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRS 2065 Query 1380 -------PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELY--L 1430 + KL +++ + CL IC GV LS APS + + Sbjct 2066 RCGNISWSRLLKLLRYMLYIWFVWTCL--TIC-----GVWLSEPYAPSLVTRFKYFLGIV 2118 Query 1431 NSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAY 1490 + ++ + +C++G+DSLD YPAL Q S + T + + E AY Sbjct 2119 MPCDYVLVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAY 2176 Query 1491 MLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFY 1550 +L+T ++G+ A++ + Y + NSWL+ F+ I+++ P ++M+RMYI A + Sbjct 2177 LLYTPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLW 2235 Query 1551 YIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWN 1610 +K ++H+ GC + C+MCYK+N A R+EC+T+VNG+KR FYV ANGG FC HNWN Sbjct 2236 LCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWN 2295 Query 1611 CLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQK 1670 C++CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ+ Sbjct 2296 CVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQR 2355 Query 1671 TYERHPLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCDESASKSASVYYSQLMCQPIL 1729 +YER P+ F N+ L + KG+ P NV+VFD ++ +E+A K+A++YY+QL C+PIL Sbjct 2356 SYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPIL 2415 Query 1730 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1789 L+D+ +V VGD ++ MF+AY + +S+ M+K+K L +TA +++ G+ ++ VL Sbjct 2416 LVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVL 2475 Query 1790 STFVSAARQGVVD--TDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDL 1847 FV + R D +DVDT D++ C++L H E T DS NN + TY K + ++ ++ Sbjct 2476 KVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEV 2535 Query 1848 GACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR 1907 G + NA+++NA +AK V+LIW D++ LSE +R+Q++ AA+K + +T ++ + Sbjct 2536 GQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLK 2595 Query 1908 QVVNVITTKISLKGG 1922 V + T + GG Sbjct 2596 ADVPCMVTPFKIIGG 2610 Range 2: 774 to 1103 Score:199 bits(506), Expect:1e-49, Method:Compositional matrix adjust., Identities:132/364(36%), Positives:198/364(54%), Gaps:43/364(11%) Query 3 IKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + VTFG++ V + V ++++ E +D +L++ + + VE GT++ + ACVV +AV Sbjct 774 VSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAV 833 Query 63 VKTLQPVSDLLTN-----MGIDLDEWSVATFYLFDDAGEENFSSRMYCSF---YPPDEEE 114 + L SDL ++ I+L+++ + +++ E+ MY S P D+E Sbjct 834 YERL---SDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEM 890 Query 115 EDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIE 174 DD I++T E ++D + G +E ED D+T + ++ Sbjct 891 VDD-------IEDTVEQASDSDDQWLG---------------DEGAED-CDNTIQDVDVA 927 Query 175 PEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGA 234 TP GY K+ ++V IKC DIV+EA++ + V+VNAAN++L HGGGVAGA Sbjct 928 TS-MTTP-------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGA 979 Query 235 LNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK-CLHVVGPNLNAGEDIQLLKA 293 LN+ATN AMQKES +YIK NG L GG LLS H LA LHVVGP+ G+D+ LL A Sbjct 980 LNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGPDKRLGQDLALLDA 1039 Query 294 AYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDN 353 Y + D +L PL+SAGIFG +SL V+ V Y+ V D+ LYE+ + D Sbjct 1040 VYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDRQLYERALATSFDV 1099 Query 354 LKPR 357 P+ Sbjct 1100 PGPQ 1103 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1565 to 2750 Score:521 bits(1341), Expect:6e-150, Method:Compositional matrix adjust., Identities:370/1231(30%), Positives:613/1231(49%), Gaps:80/1231(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 A-CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ++++P +++ ++K +V +VI+ +K + L D+ Sbjct 2026 SESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDM 2077 Query 1258 YVENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTS 1313 ++ ++ N LS A+ + TI G+ + S+P + L +KP Sbjct 2078 WLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF-------- 2128 Query 1314 NCAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLD 1371 N K + ++ N++ ++F LLF + + T +A K KL Sbjct 2129 NVVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVAL 2181 Query 1372 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELY 1429 A N + K+S + A + + + + I F L G P++ + + Sbjct 2182 AFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWI 2241 Query 1430 LNSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-L 1475 N+ ++ T+ +C GS C CL+G D LD+Y A++ +Q + Sbjct 2242 KNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFV 2301 Query 1476 DLT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQ 1532 D T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ Sbjct 2302 DYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLAN 2361 Query 1533 MAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRS 1592 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R Sbjct 2362 MLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRY 2421 Query 1593 FYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 1652 + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2422 YDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTD 2481 Query 1653 VAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA 1712 V + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + D++ Sbjct 2482 VKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKAN 2539 Query 1713 SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 1772 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ Sbjct 2540 FLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 2599 Query 1773 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNN 1831 ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2600 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 2659 Query 1832 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2660 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 2719 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2720 CCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1037 Score:67.0 bits(162), Expect:2e-09, Method:Compositional matrix adjust., Identities:57/197(29%), Positives:96/197(48%), Gaps:18/197(9%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE + ++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAE-TVRVEEEEEEDWLDDTTEQSEIEPEP 177 EE ++E T+ L ++ E V E+EE + L+DT + Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 178 EPTPEEPVNQFTGYLKL 194 + EE V Q + ++ L Sbjct 1022 DSQVEEDV-QMSDFVDL 1037 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1565 to 2750 Score:520 bits(1340), Expect:7e-150, Method:Compositional matrix adjust., Identities:373/1230(30%), Positives:615/1230(50%), Gaps:78/1230(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 ACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + ES S+E+ I+ ++ K +V +VI+ +K + L D+ + Sbjct 2026 S-ESDAKESKEI---NIIKLSGVK---KPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N+LS+A+ + TI G+ + S+P + L +KP N Sbjct 2079 LTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF--------N 2129 Query 1315 CAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 1372 K + ++ N++ ++F LLF + + T +A K KL A Sbjct 2130 VVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVALA 2182 Query 1373 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYL 1430 N + K+S + A + + + + I F L G P++ + + Sbjct 2183 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 2242 Query 1431 NSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LD 1476 ++ ++ T+ +C GS C CL+G D LD+Y A++ +Q +D Sbjct 2243 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 2302 Query 1477 LT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQM 1533 T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ M Sbjct 2303 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 2362 Query 1534 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 1593 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV GM R + Sbjct 2363 LPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 2422 Query 1594 YVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1653 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2423 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 2482 Query 1654 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAS 1713 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + D++ Sbjct 2483 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 2540 Query 1714 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1773 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+A Sbjct 2541 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 2600 Query 1774 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNF 1832 TAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2601 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 2660 Query 1833 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAA 1892 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2661 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 2720 Query 1893 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2721 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:82.8 bits(203), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1030 Score:70.1 bits(170), Expect:2e-10, Method:Compositional matrix adjust., Identities:58/189(31%), Positives:93/189(49%), Gaps:25/189(13%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE +S++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEE-----EDWLDD----TTE 169 EE ++E T+ L ++ E E+EE ED LDD T Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 170 QSEIEPEPE 178 S++E + E Sbjct 1022 DSQVEEDVE 1030 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1565 to 2750 Score:521 bits(1341), Expect:8e-150, Method:Compositional matrix adjust., Identities:370/1231(30%), Positives:613/1231(49%), Gaps:80/1231(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 A-CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ++++P +++ ++K +V +VI+ +K + L D+ Sbjct 2026 SESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDM 2077 Query 1258 YVENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTS 1313 ++ ++ N LS A+ + TI G+ + S+P + L +KP Sbjct 2078 WLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF-------- 2128 Query 1314 NCAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLD 1371 N K + ++ N++ ++F LLF + + T +A K KL Sbjct 2129 NVVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVAL 2181 Query 1372 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELY 1429 A N + K+S + A + + + + I F L G P++ + + Sbjct 2182 AFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWI 2241 Query 1430 LNSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-L 1475 N+ ++ T+ +C GS C CL+G D LD+Y A++ +Q + Sbjct 2242 KNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFV 2301 Query 1476 DLT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQ 1532 D T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ Sbjct 2302 DYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLAN 2361 Query 1533 MAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRS 1592 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R Sbjct 2362 MLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRY 2421 Query 1593 FYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 1652 + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2422 YDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTD 2481 Query 1653 VAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA 1712 V + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + D++ Sbjct 2482 VKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKAN 2539 Query 1713 SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 1772 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ Sbjct 2540 FLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 2599 Query 1773 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNN 1831 ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2600 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 2659 Query 1832 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2660 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 2719 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2720 CCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1037 Score:67.4 bits(163), Expect:2e-09, Method:Compositional matrix adjust., Identities:57/197(29%), Positives:96/197(48%), Gaps:18/197(9%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE + ++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAE-TVRVEEEEEEDWLDDTTEQSEIEPEP 177 EE ++E T+ L ++ E V E+EE + L+DT + Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 178 EPTPEEPVNQFTGYLKL 194 + EE V Q + ++ L Sbjct 1022 DSQVEEDV-QMSDFVDL 1037 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1565 to 2750 Score:520 bits(1340), Expect:9e-150, Method:Compositional matrix adjust., Identities:373/1230(30%), Positives:615/1230(50%), Gaps:78/1230(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 ACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + ES S+E+ I+ ++ K +V +VI+ +K + L D+ + Sbjct 2026 S-ESDAKESKEI---NIIKLSGVK---KPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N+LS+A+ + TI G+ + S+P + L +KP N Sbjct 2079 LTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF--------N 2129 Query 1315 CAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 1372 K + ++ N++ ++F LLF + + T +A K KL A Sbjct 2130 VVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVALA 2182 Query 1373 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYL 1430 N + K+S + A + + + + I F L G P++ + + Sbjct 2183 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 2242 Query 1431 NSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LD 1476 ++ ++ T+ +C GS C CL+G D LD+Y A++ +Q +D Sbjct 2243 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 2302 Query 1477 LT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQM 1533 T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ M Sbjct 2303 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 2362 Query 1534 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 1593 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV GM R + Sbjct 2363 LPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 2422 Query 1594 YVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1653 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2423 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 2482 Query 1654 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAS 1713 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + D++ Sbjct 2483 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 2540 Query 1714 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1773 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+A Sbjct 2541 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 2600 Query 1774 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNF 1832 TAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2601 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 2660 Query 1833 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAA 1892 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2661 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 2720 Query 1893 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2721 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:83.2 bits(204), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1030 Score:70.5 bits(171), Expect:2e-10, Method:Compositional matrix adjust., Identities:58/189(31%), Positives:93/189(49%), Gaps:25/189(13%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE +S++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEE-----EDWLDD----TTE 169 EE ++E T+ L ++ E E+EE ED LDD T Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 170 QSEIEPEPE 178 S++E + E Sbjct 1022 DSQVEEDVE 1030 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1565 to 2750 Score:519 bits(1336), Expect:2e-149, Method:Compositional matrix adjust., Identities:370/1231(30%), Positives:612/1231(49%), Gaps:80/1231(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 A-CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ++++P +++ ++K +V +VI+ +K + L D+ Sbjct 2026 SESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDM 2077 Query 1258 YVENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTS 1313 ++ ++ N LS A+ + TI G+ + S+P + L +KP Sbjct 2078 WLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF-------- 2128 Query 1314 NCAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLD 1371 N K + ++ N++ ++F LLF + + T +A K KL Sbjct 2129 NVVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVAL 2181 Query 1372 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELY 1429 A N + K+S + A + + + + I F L G P++ + + Sbjct 2182 AFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWI 2241 Query 1430 LNSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-L 1475 N+ ++ T+ +C GS C CL+G D LD+Y A++ +Q + Sbjct 2242 KNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFV 2301 Query 1476 DLT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQ 1532 D T +L + E +++Y L+T +FY L +Q+ + + ++ W + ++S+ Sbjct 2302 DYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLAN 2361 Query 1533 MAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRS 1592 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R Sbjct 2362 MLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRY 2421 Query 1593 FYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 1652 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2422 YDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTD 2481 Query 1653 VAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA 1712 V + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + D++ Sbjct 2482 VKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKAN 2539 Query 1713 SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 1772 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ Sbjct 2540 FLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 2599 Query 1773 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNN 1831 ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2600 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 2659 Query 1832 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2660 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 2719 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + LT V+V+TT SLKGG Sbjct 2720 CCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1029 Score:63.9 bits(154), Expect:2e-08, Method:Compositional matrix adjust., Identities:54/188(29%), Positives:90/188(47%), Gaps:17/188(9%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C + V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE + ++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAE-TVRVEEEEEEDWLDDTTEQSEIEPEP 177 EE ++E T+ L ++ E V E+EE + L+DT + Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 178 EPTPEEPV 185 + EE V Sbjct 1022 DSQVEEDV 1029 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1565 to 2750 Score:519 bits(1337), Expect:2e-149, Method:Compositional matrix adjust., Identities:370/1231(30%), Positives:612/1231(49%), Gaps:80/1231(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 A-CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ++++P +++ ++K +V +VI+ +K + L D+ Sbjct 2026 SESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDM 2077 Query 1258 YVENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTS 1313 ++ ++ N LS A+ + TI G+ + S+P + L +KP Sbjct 2078 WLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF-------- 2128 Query 1314 NCAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLD 1371 N K + ++ N++ ++F LLF + + T +A K KL Sbjct 2129 NVVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVAL 2181 Query 1372 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELY 1429 A N + K+S + A + + + + I F L G P++ + + Sbjct 2182 AFKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWI 2241 Query 1430 LNSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-L 1475 N+ ++ T+ +C GS C CL+G D LD+Y A++ +Q + Sbjct 2242 KNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFV 2301 Query 1476 DLT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQ 1532 D T +L + E +++Y L+T +FY L +Q+ + + ++ W + ++S+ Sbjct 2302 DYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLAN 2361 Query 1533 MAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRS 1592 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R Sbjct 2362 MLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRY 2421 Query 1593 FYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 1652 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2422 YDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTD 2481 Query 1653 VAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESA 1712 V + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + D++ Sbjct 2482 VKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKAN 2539 Query 1713 SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 1772 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ Sbjct 2540 FLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALI 2599 Query 1773 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNN 1831 ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2600 ATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNN 2659 Query 1832 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2660 LVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKA 2719 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + LT V+V+TT SLKGG Sbjct 2720 CCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1029 Score:64.3 bits(155), Expect:1e-08, Method:Compositional matrix adjust., Identities:54/188(29%), Positives:90/188(47%), Gaps:17/188(9%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C + V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE + ++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAE-TVRVEEEEEEDWLDDTTEQSEIEPEP 177 EE ++E T+ L ++ E V E+EE + L+DT + Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 178 EPTPEEPV 185 + EE V Sbjct 1022 DSQVEEDV 1029 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1565 to 2750 Score:519 bits(1336), Expect:3e-149, Method:Compositional matrix adjust., Identities:373/1230(30%), Positives:614/1230(49%), Gaps:78/1230(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 ACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + ES S+E+ I+ ++ K +V +VI+ +K + L D+ + Sbjct 2026 S-ESDAKESKEI---NIIKLSGVK---KPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N LS+A+ + TI G+ + S+P + L +KP N Sbjct 2079 LTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF--------N 2129 Query 1315 CAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 1372 K + ++ N++ ++F LLF + + T +A K KL A Sbjct 2130 VVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVALA 2182 Query 1373 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYL 1430 N + K+S + A + + + + I F L G P++ + + Sbjct 2183 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 2242 Query 1431 NSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LD 1476 ++ ++ T+ +C GS C CL+G D LD+Y A++ +Q +D Sbjct 2243 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 2302 Query 1477 LT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQM 1533 T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ M Sbjct 2303 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 2362 Query 1534 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 1593 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV GM R + Sbjct 2363 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 2422 Query 1594 YVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1653 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2423 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 2482 Query 1654 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAS 1713 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + D++ Sbjct 2483 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 2540 Query 1714 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1773 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+A Sbjct 2541 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 2600 Query 1774 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNF 1832 TAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2601 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 2660 Query 1833 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAA 1892 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2661 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 2720 Query 1893 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2721 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:82.8 bits(203), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1030 Score:69.7 bits(169), Expect:3e-10, Method:Compositional matrix adjust., Identities:58/189(31%), Positives:93/189(49%), Gaps:25/189(13%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE +S++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEE-----EDWLDD----TTE 169 EE ++E T+ L ++ E E+EE ED LDD T Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 170 QSEIEPEPE 178 S++E + E Sbjct 1022 DSQVEEDVE 1030 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1565 to 2750 Score:519 bits(1336), Expect:3e-149, Method:Compositional matrix adjust., Identities:373/1230(30%), Positives:614/1230(49%), Gaps:78/1230(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TGV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E VT +P GDVV Y ++ Sbjct 1917 DGVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTS-NSFEVLAVEDTQGMDNL 1198 +G KP++W ++ + + + +P+ N F+VL V+D ++ Sbjct 1975 RGCITFGKPVIWLSHEQASLNSLT---------YFNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1199 ACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + ES S+E+ I+ ++ K +V +VI+ +K + L D+ + Sbjct 2026 S-ESDAKESKEI---NIIKLSGVK---KPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N LS+A+ + TI G+ + S+P + L +KP N Sbjct 2079 LTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVF--------N 2129 Query 1315 CAKRLAQRVFN--NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 1372 K + ++ N++ ++F LLF + + T +A K KL A Sbjct 2130 VVKAVRNKISACFNFIKWLFVLLFGWIKISADN----KVIYTTEVAS---KLTCKLVALA 2182 Query 1373 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYL 1430 N + K+S + A + + + + I F L G P++ + + Sbjct 2183 FKNAFLTFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIK 2242 Query 1431 NSSNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LD 1476 ++ ++ T+ +C GS C CL+G D LD+Y A++ +Q +D Sbjct 2243 STFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVD 2302 Query 1477 LT-ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQM 1533 T +L + E +++Y L+T +FY L +Q+ + F+ ++ W + ++S+ M Sbjct 2303 YTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANM 2362 Query 1534 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 1593 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV GM R + Sbjct 2363 LPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYY 2422 Query 1594 YVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1653 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2423 DVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDV 2482 Query 1654 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAS 1713 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + D++ Sbjct 2483 KQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANF 2540 Query 1714 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1773 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+A Sbjct 2541 LNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIA 2600 Query 1774 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNF 1832 TAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN Sbjct 2601 TAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNL 2660 Query 1833 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAA 1892 + TY K +N+ DLG I +A+H+ VAK VS IW+V + LS + +++ A Sbjct 2661 VPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKAC 2720 Query 1893 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 K + +LT V+V+TT SLKGG Sbjct 2721 CKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:83.2 bits(204), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ D +K Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1030 Score:70.1 bits(170), Expect:3e-10, Method:Compositional matrix adjust., Identities:58/189(31%), Positives:93/189(49%), Gaps:25/189(13%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD+ + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + + +LFD+AGEE +S++YC+F P EDD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAP----EDDD 968 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEE-----EDWLDD----TTE 169 EE ++E T+ L ++ E E+EE ED LDD T Sbjct 969 FLEESGVEEDDVEGEETD-------LTVTSAGEPCVASEQEESSEILEDTLDDGPCVETS 1021 Query 170 QSEIEPEPE 178 S++E + E Sbjct 1022 DSQVEEDVE 1030 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1565 to 2750 Score:517 bits(1331), Expect:1e-148, Method:Compositional matrix adjust., Identities:373/1228(30%), Positives:608/1228(49%), Gaps:74/1228(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TG++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E +T +P GDVV + Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 +G KP++W ++ K + T+ R L VD N F+VL V+D + + Sbjct 1975 RGCITFGKPVIWLSHE---KASLNSLTYFNRPLL----VD-DNKFDVLKVDDVDDSGDSS 2026 Query 1200 CESQQPTSE-EVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + T E +++ ++K +V +VI+ K + L D+ + Sbjct 2027 ESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N LS A+ + TI G+ + S+P + L +KP A+ Sbjct 2079 LTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKP-----AVNVVK 2132 Query 1315 CAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGI 1374 + FN ++ ++F LLF + + T IA K KL A Sbjct 2133 AVRNKTSACFN-FIKWLFVLLFGWIKISADN----KVIYTTEIAS---KLTCKLVALAFK 2184 Query 1375 NYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYLNS 1432 N + K+S + A + + + + I F L G P++ + + N+ Sbjct 2185 NAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNT 2244 Query 1433 SNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LDLT 1478 ++ T+ +C GS C CL+G D LD+Y A++ +Q +D T Sbjct 2245 FSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYT 2304 Query 1479 -ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAP 1535 +L + E +++Y L+T +FY L +Q+ + F+ ++ W ++++ M P Sbjct 2305 GVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLP 2364 Query 1536 VSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYV 1595 +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R + V Sbjct 2365 AHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDV 2424 Query 1596 YANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAV 1655 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2425 MANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQ 2484 Query 1656 KNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKS 1715 ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + D++ + Sbjct 2485 VGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLN 2542 Query 1716 ASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATA 1775 A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATA Sbjct 2543 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 2602 Query 1776 HSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFML 1834 HS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN + Sbjct 2603 HSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 2662 Query 1835 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKK 1894 TY K +N+ DLG I +A+H+ VAK VS IW+V + S + +++ A K Sbjct 2663 TYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCK 2722 Query 1895 NNIPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V+V+TT SLKGG Sbjct 2723 TGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:83.2 bits(204), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:81/155(52%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ + +K Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1029 Score:64.7 bits(156), Expect:9e-09, Method:Compositional matrix adjust., Identities:55/187(29%), Positives:90/187(48%), Gaps:15/187(8%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + +LFD+AGEE F+ ++YC+F P E+DD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAP---EDDDF 969 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPE 178 ++E+ E E + L + A V E+EE + L+DT + + Sbjct 970 ------LEESDVEEDDVEGEETDLTIT-SAGQPCVASEQEESSEVLEDTLDDGPSVETSD 1022 Query 179 PTPEEPV 185 EE V Sbjct 1023 SQVEEDV 1029 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1565 to 2750 Score:516 bits(1330), Expect:2e-148, Method:Compositional matrix adjust., Identities:373/1228(30%), Positives:608/1228(49%), Gaps:74/1228(6%) Query 727 IKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 786 + + TVD N + V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 787 RSE---AFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 843 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 844 QLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 903 L + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 + CK CG K TG++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1024 DVFYKETSYTTTIKPV--SYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDL-VPTQPLP 1080 D Y + + T K V +Y LD V E +P L YY YYT++ I T Sbjct 1858 DCLYLK-NLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKV 1916 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL D LN GF + E +T +P GDVV + Y ++ Sbjct 1917 DGVYTNFKLI--GHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYE 1974 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 1199 +G KP++W ++ K + T+ R L VD N F+VL V+D + + Sbjct 1975 RGCITFGKPVIWLSHE---KASLNSLTYFNRPLL----VD-DNKFDVLKVDDVDDSGDSS 2026 Query 1200 CESQQPTSE-EVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAY 1258 + T E +++ ++K +V +VI+ K + L D+ + Sbjct 2027 ESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMW 2078 Query 1259 VENTSITIKKPNELSLALGLKTI---ATHGIAAINSVPWSKI-LAYVKPFLGQAAITTSN 1314 + ++ N LS A+ + TI G+ + S+P + L +KP A+ Sbjct 2079 LTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKP-----AVNVVK 2132 Query 1315 CAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGI 1374 + FN ++ ++F LLF + + T IA K KL A Sbjct 2133 AVRNKTSACFN-FIKWLFVLLFGWIKISADN----KVIYTTEIAS---KLTCKLVALAFK 2184 Query 1375 NYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG-VLLSNFG-APSYCNGVRELYLNS 1432 N + K+S + A + + + + I F L G P++ + + N+ Sbjct 2185 NAFLTFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNT 2244 Query 1433 SNVTTM-------------DFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK-LDLT 1478 ++ T+ +C GS C CL+G D LD+Y A++ +Q +D T Sbjct 2245 FSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYT 2304 Query 1479 -ILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAP 1535 +L + E +++Y L+T +FY L +Q+ + F+ ++ W ++++ M P Sbjct 2305 GVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALANMLP 2364 Query 1536 VSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYV 1595 +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV GM R + V Sbjct 2365 AHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDV 2424 Query 1596 YANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAV 1655 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2425 MANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQ 2484 Query 1656 KNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKS 1715 ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + D++ + Sbjct 2485 VGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLN 2542 Query 1716 ASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATA 1775 A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATA Sbjct 2543 AAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATA 2602 Query 1776 HSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFML 1834 HS + +G + VL TF+S AR+ +D+DVDTK + + + + + LE+T +SCNN + Sbjct 2603 HSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVP 2662 Query 1835 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKK 1894 TY K +N+ DLG I +A+H+ VAK VS IW+V + S + +++ A K Sbjct 2663 TYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCK 2722 Query 1895 NNIPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V+V+TT SLKGG Sbjct 2723 TGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:83.2 bits(204), Expect:2e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:81/155(52%), Gaps:2/155(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV DI+K ++ V+VN AN H+ HGGGVA A+ A KE+ + +K Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G G + +G L K L+VVGP+ + LL+ Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 GIF SL + T + QV + N++ ++ + Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1030 Score:64.7 bits(156), Expect:1e-08, Method:Compositional matrix adjust., Identities:56/188(30%), Positives:92/188(48%), Gaps:23/188(12%) Query 4 KGVTFGED-TVWEVQGY-KNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +++ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 + + L P +L + L + +LFD+AGEE F+ ++YC+F P E+DD Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAP---EDDDF 969 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDT--------TEQ 170 ++E+ E E + L + A V E+EE + L+DT T Sbjct 970 ------LEESDVEEDDVEGEETDLTIT-SAGQPCVASEQEESSEVLEDTLDDGPSVETSD 1022 Query 171 SEIEPEPE 178 S++E + E Sbjct 1023 SQVEEDVE 1030 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1543 to 2783 Score:496 bits(1277), Expect:9e-142, Method:Compositional matrix adjust., Identities:378/1276(30%), Positives:597/1276(46%), Gaps:96/1276(7%) Query 708 EVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIK 767 +V S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 768 PHVNHEGKTFF----VLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGL 823 H+GK FF + +D ++AF + DE L +Y + L K W G Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF----DEPQLLKYYNMLGMCK-WPVVVCGNY 1653 Query 824 TSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGE 883 + K ++NNCY++ L LQ L +KF+ QEA+ R+G F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 884 LGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVS 943 D + M +L+ A+L A VCK CG K GV+AVM+ GTL +L G + Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 944 IPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKET 1003 I C CG + Q F++ S P KL + AN +TG GHYTH+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPK 1829 Query 1004 LYRIDGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKD 1062 D +++K+SE KG TD Y K T + K ++ LD V E P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1063 NAYYTEQPIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFP 1120 YYT+ I T + NFKL A+ N GF E +T +P Sbjct 1890 GKYYTKPIIKAQFRTFEKVEGVYTNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWP 1947 Query 1121 DLNGDVVAIDYRHYSASFKKGAKLLHKPIVW--HINQATTKTTF--KPNTWCLRCLWSTK 1176 GDVV Y + + G KP++W H + T+ +P+ C ++ Sbjct 1948 TATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVL 2006 Query 1177 PVDTSNSFEV----LAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIE---------- 1222 PVD S + AV T + A ++V + ++ +V+ Sbjct 2007 PVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGAT 2066 Query 1223 CDVKTTEVVG---------NVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELS 1273 DVK ++ G +V++ KV + L D+ ++ + NELS Sbjct 2067 VDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELS 2126 Query 1274 LALGLKTIATHGIAAINSVPW--SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNY--MP 1329 + T+ + V W +KI+ K L + K + +V Y + Sbjct 2127 RLVNSPTVREY-------VKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVK 2179 Query 1330 YVFTLLFQLCTF--------TKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPK 1381 + F F F T S++ +L KN++++ + G V + Sbjct 2180 WFFLYCFSWIKFNTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVAT-- 2237 Query 1382 FSKLFTIAMWLLLLSICLGSLICVTAAF---------GVLLSNFGAPSYCNGVRELYLNS 1432 +F + L ++ L F + + FG + C +LY S Sbjct 2238 ---VFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLC----DLYQVS 2290 Query 1433 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLAY 1490 FC GS C +C SG D LD+Y A+ +Q V D +++ L E V+ Y Sbjct 2291 DVGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGY 2350 Query 1491 MLFTKFFY-LLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFA 1547 L+T FY L GL MQ+ + F+ + W F + + M P ++R YI Sbjct 2351 SLYTVCFYPLFGLIG-MQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVT 2409 Query 1548 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 + Y I+ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2410 AMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKH 2469 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 1667 WNCLNC F G+TFI+ E A DLS + KRP+NPTD + Y+V V ++ L++++ Sbjct 2470 QWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERD 2529 Query 1668 GQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQP 1727 GQ+ Y+ S FV+++ L + KG +V+V + ++ D++ +A+V+Y+Q + +P Sbjct 2530 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2587 Query 1728 ILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDG 1787 +LL+++ L++ VS MFD YVD+ V + L + V AH+ L +GV L+ Sbjct 2588 MLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2647 Query 1788 VLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRD 1846 V+ TF+ AR+ +D+DV+TK + + + + ++ ++ T +SCNN + TY K + + D Sbjct 2648 VMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAAD 2707 Query 1847 LGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1906 LG I NA+H+ A VAK+ NV+ IW+V + LS L+ ++R A K + +LT Sbjct 2708 LGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQ 2767 Query 1907 RQVVNVITTKISLKGG 1922 V ++TT SLKGG Sbjct 2768 EANVPILTTPFSLKGG 2783 Range 2: 834 to 1013 Score:69.7 bits(169), Expect:3e-10, Method:Compositional matrix adjust., Identities:56/188(30%), Positives:86/188(45%), Gaps:16/188(8%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V E+ + ++I F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 TL P + + T + L+ + YLFD+ GEE + +MYCSF PD+E + Sbjct 894 ESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE-----D 948 Query 120 CEEEEIDETCEHEYGTEDDYQGLPL----EFGASAETVRVEEEEEEDWLDDTTEQSEIEP 175 C ++ + E++ DD L E G + V V E + D E +IE Sbjct 949 CVAADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAESDAR---LDQVEAFDIEK 1005 Query 176 EPEPTPEE 183 +P E Sbjct 1006 VEDPILNE 1013 Range 3: 1267 to 1415 Score:57.8 bits(138), Expect:1e-06, Method:Compositional matrix adjust., Identities:52/149(35%), Positives:76/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + VIVN AN + HG GVAGA+ KA + KE+ D +K Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VG +G NL K L++VGP+ + + L+ AY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N+K Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNK 1415 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1543 to 2783 Score:495 bits(1275), Expect:1e-141, Method:Compositional matrix adjust., Identities:378/1276(30%), Positives:597/1276(46%), Gaps:96/1276(7%) Query 708 EVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIK 767 +V S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 768 PHVNHEGKTFF----VLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGL 823 H+GK FF + +D ++AF + DE L +Y + L K W G Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF----DEPQLLKYYNMLGMCK-WPVVVCGNY 1653 Query 824 TSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGE 883 + K ++NNCY++ L LQ L +KF+ QEA+ R+G F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 884 LGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVS 943 D + M +L+ A+L A VCK CG K GV+AVM+ GTL +L G + Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 944 IPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKET 1003 I C CG + Q F++ S P KL + AN +TG GHYTH+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPK 1829 Query 1004 LYRIDGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKD 1062 D +++K+SE KG TD Y K T + K ++ LD V E P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1063 NAYYTEQPIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFP 1120 YYT+ I T + NFKL A+ N GF E +T +P Sbjct 1890 GKYYTKPIIKAQFRTFEKVEGVYTNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWP 1947 Query 1121 DLNGDVVAIDYRHYSASFKKGAKLLHKPIVW--HINQATTKTTF--KPNTWCLRCLWSTK 1176 GDVV Y + + G KP++W H + T+ +P+ C ++ Sbjct 1948 TATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVL 2006 Query 1177 PVDTSNSFEV----LAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIE---------- 1222 PVD S + AV T + A ++V + ++ +V+ Sbjct 2007 PVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGAT 2066 Query 1223 CDVKTTEVVG---------NVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELS 1273 DVK ++ G +V++ KV + L D+ ++ + NELS Sbjct 2067 VDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELS 2126 Query 1274 LALGLKTIATHGIAAINSVPW--SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNY--MP 1329 + T+ + V W +KI+ K L + K + +V Y + Sbjct 2127 RLVNSPTVREY-------VKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVK 2179 Query 1330 YVFTLLFQLCTF--------TKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPK 1381 + F F F T S++ +L KN++++ + G V + Sbjct 2180 WFFLYCFSWIKFNTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVAT-- 2237 Query 1382 FSKLFTIAMWLLLLSICLGSLICVTAAF---------GVLLSNFGAPSYCNGVRELYLNS 1432 +F + L ++ L F + + FG + C +LY S Sbjct 2238 ---VFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLC----DLYQVS 2290 Query 1433 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLAY 1490 FC GS C +C SG D LD+Y A+ +Q V D +++ L E V+ Y Sbjct 2291 DVGYRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGY 2350 Query 1491 MLFTKFFY-LLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFA 1547 L+T FY L GL MQ+ + F+ + W F + + M P ++R YI Sbjct 2351 SLYTVCFYPLFGLIG-MQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVT 2409 Query 1548 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 + Y I+ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2410 AMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKH 2469 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 1667 WNCLNC F G+TFI+ E A DLS + KRP+NPTD + Y+V V ++ L++++ Sbjct 2470 QWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERD 2529 Query 1668 GQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQP 1727 GQ+ Y+ S FV+++ L + KG +V+V + ++ D++ +A+V+Y+Q + +P Sbjct 2530 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2587 Query 1728 ILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDG 1787 +LL+++ L++ VS MFD YVD+ V + L + V AH+ L +GV L+ Sbjct 2588 MLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2647 Query 1788 VLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRD 1846 V+ TF+ AR+ +D+DV+TK + + + + ++ ++ T +SCNN + TY K + + D Sbjct 2648 VMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAAD 2707 Query 1847 LGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1906 LG I NA+H+ A VAK+ NV+ IW+V + LS L+ ++R A K + +LT Sbjct 2708 LGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQ 2767 Query 1907 RQVVNVITTKISLKGG 1922 V ++TT SLKGG Sbjct 2768 EANVPILTTPFSLKGG 2783 Range 2: 846 to 1013 Score:69.7 bits(169), Expect:3e-10, Method:Compositional matrix adjust., Identities:52/176(30%), Positives:81/176(46%), Gaps:15/176(8%) Query 15 EVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD--- 71 E+ + ++I F LD D VL++ CS + V+ + E VV +AV TL P + Sbjct 846 EIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDV 905 Query 72 LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEH 131 + T + L+ + YLFD+ GEE + +MYCSF PD+E +C ++ + E+ Sbjct 906 IGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE-----DCVAADVVDADEN 960 Query 132 EYGTEDDYQGLPL----EFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEE 183 + DD L E G + V V E + D E +IE +P E Sbjct 961 QGDDADDSAALVTDTQEEDGVAKGQVGVAESDAR---LDQVEAFDIEKVEDPILNE 1013 Range 3: 1267 to 1415 Score:57.0 bits(136), Expect:2e-06, Method:Compositional matrix adjust., Identities:52/149(35%), Positives:76/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + VIVN AN + HG GVAGA+ KA + KE+ D +K Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VG +G NL K L++VGP+ + + L+ AY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N+K Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNK 1415 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1599 to 2837 Score:489 bits(1259), Expect:1e-139, Method:Compositional matrix adjust., Identities:380/1272(30%), Positives:603/1272(47%), Gaps:93/1272(7%) Query 711 SLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHV 770 S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1599 SVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSA 1654 Query 771 NHEGKTFF----VLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSI 826 ++GK FF + +D +AF + DE L +Y + L K W G + Sbjct 1655 IYKGKVFFQYSDLSEADLVAVKDAFGF----DEPQLLKYYTMLGMCK-WPVVVCGNYFAF 1709 Query 827 KWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGD 886 K ++NNCY++ L LQ L +KF QEA+ R+G F +L+LA + E D Sbjct 1710 KQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSD 1769 Query 887 VRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPC 946 + M +L+ A+L A L VCK CG K GV+AVM+ GTL +L G +I C Sbjct 1770 SIDFMRVVLREADLSGATCNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIAC 1828 Query 947 VCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYR 1006 CG + Q F++ S P KL + AN +TG GHYTH+ K Sbjct 1829 TCGSKLV-HCTQFNVPFLICSNTPEGRKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQL 1885 Query 1007 IDGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1065 D ++ K+SE KG TD Y K T + ++ LD V E +P L YY + Y Sbjct 1886 YDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKY 1945 Query 1066 YTEQPIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLN 1123 YT+ I T + + NFKL A+ LN GF E +T +P Sbjct 1946 YTKPIIKAQFRTFEKVDGVYTNFKLV--GHSIAEKLNAKLGFDCNSPFVEYKITEWPTAT 2003 Query 1124 GDVVAIDYRHYSASFKKGAKLLHKPIVW--HINQATTKTTF--KPNTWCLRCLWSTKPVD 1179 GDVV Y + + G KP+VW H + T+ +P+ C ++ PVD Sbjct 2004 GDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVD 2062 Query 1180 TSNSFE------VLAVEDTQGMD----------NLACES---QQPTSEEVVENPTIQ--- 1217 S + + V G D AC S + EV + P++ Sbjct 2063 VSEPTDKGPVPAAVLVTGVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAAD 2122 Query 1218 -KEVIECDVKT-TEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLA 1275 KEV VK +V G+V++ KV + L D+ ++ + NELS Sbjct 2123 VKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL 2182 Query 1276 LGLKTIATHGIAAINSVPWS--KILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFT 1333 + T+ + V W KI+ K L + K + + Y + Sbjct 2183 VNSPTVREY-------VKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWF 2235 Query 1334 LLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFS----KLFTIA 1389 LL+ +T++++ + T +A K KLC A N +++ +S F +A Sbjct 2236 LLYCFSWIKFNTDNKVIYT--TEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVA 2290 Query 1390 MWLLLLSICLGSLICVTAAFGVLLSNFGA-PSYCNGVRELYLNSSNVTTM---------- 1438 LL L + + ++ + L N G P++ + + + V+T+ Sbjct 2291 TVFLLWFNFLYANVILSDFY---LPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLG 2347 Query 1439 ---DFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLAYMLF 1493 FC GS C +C SG D LD+Y A+ +Q V D +++ L E V+ Y L+ Sbjct 2348 YRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLY 2407 Query 1494 TKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY 1551 T FY L + MQ+ + F+ + W + + M P ++R YI + Y Sbjct 2408 TVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYK 2467 Query 1552 IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNC 1611 ++ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC Sbjct 2468 VYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC 2527 Query 1612 LNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKT 1671 LNC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V ++ L++++ GQ+ Sbjct 2528 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRV 2587 Query 1672 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLL 1731 Y+ S FV+++ L + KG +V+V + ++ D++ A+V+Y+Q + +P+L++ Sbjct 2588 YDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMV 2645 Query 1732 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 1791 ++ L++ VS MFD YVD+ V + L + V AH+ L +GV L+ V+ T Sbjct 2646 EKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDT 2705 Query 1792 FVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGAC 1850 F+ AR+ +D+DV+TK + + + + ++ ++ T +SCNN + TY K + + DLG Sbjct 2706 FIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVL 2765 Query 1851 IDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1910 I NA+H+ A VAK+ NV+ IW+V + LS L+ ++R A K + +LT V Sbjct 2766 IQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANV 2825 Query 1911 NVITTKISLKGG 1922 ++TT SLKGG Sbjct 2826 PILTTPFSLKGG 2837 Range 2: 1320 to 1468 Score:82.4 bits(202), Expect:4e-14, Method:Compositional matrix adjust., Identities:52/149(35%), Positives:77/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + N VIVN AN + HG GVAGA+ + A KE+ D +K Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VG +G L KK L++VGP+ + + LL+ AY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N++ Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQ 1468 Range 3: 844 to 964 Score:68.6 bits(166), Expect:6e-10, Method:Compositional matrix adjust., Identities:41/121(34%), Positives:65/121(53%), Gaps:6/121(4%) Query 13 VWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD- 71 V ++ + ++ITF LD D VL++ CS + V+ + E VV +AV TL P + Sbjct 844 VRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEH 903 Query 72 --LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEE---EDDAECEEEEID 126 + T + LD + YLFD+ G+E + RMYCSF PD+E+ D + +E + D Sbjct 904 DVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAADVVDADENQDD 963 Query 127 E 127 + Sbjct 964 D 964 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1599 to 2837 Score:489 bits(1258), Expect:2e-139, Method:Compositional matrix adjust., Identities:380/1272(30%), Positives:603/1272(47%), Gaps:93/1272(7%) Query 711 SLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHV 770 S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1599 SVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSA 1654 Query 771 NHEGKTFF----VLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSI 826 ++GK FF + +D +AF + DE L +Y + L K W G + Sbjct 1655 IYKGKVFFQYSDLSEADLVAVKDAFGF----DEPQLLKYYTMLGMCK-WPVVVCGNYFAF 1709 Query 827 KWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGD 886 K ++NNCY++ L LQ L +KF QEA+ R+G F +L+LA + E D Sbjct 1710 KQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSD 1769 Query 887 VRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPC 946 + M +L+ A+L A L VCK CG K GV+AVM+ GTL +L G +I C Sbjct 1770 SIDFMRVVLREADLSGATCNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIAC 1828 Query 947 VCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYR 1006 CG + Q F++ S P KL + AN +TG GHYTH+ K Sbjct 1829 TCGSKLV-HCTQFNVPFLICSNTPEGRKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQL 1885 Query 1007 IDGAHLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAY 1065 D ++ K+SE KG TD Y K T + ++ LD V E +P L YY + Y Sbjct 1886 YDACNVNKVSEAKGNFTDCLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKY 1945 Query 1066 YTEQPIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLN 1123 YT+ I T + + NFKL A+ LN GF E +T +P Sbjct 1946 YTKPIIKAQFRTFEKVDGVYTNFKLV--GHSIAEKLNAKLGFDCNSPFVEYKITEWPTAT 2003 Query 1124 GDVVAIDYRHYSASFKKGAKLLHKPIVW--HINQATTKTTF--KPNTWCLRCLWSTKPVD 1179 GDVV Y + + G KP+VW H + T+ +P+ C ++ PVD Sbjct 2004 GDVVLASDDLYVSRYSSGCITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVD 2062 Query 1180 TSNSFE------VLAVEDTQGMD----------NLACES---QQPTSEEVVENPTIQ--- 1217 S + + V G D AC S + EV + P++ Sbjct 2063 VSEPTDKGPVPAAVLVTGVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAAD 2122 Query 1218 -KEVIECDVKT-TEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLA 1275 KEV VK +V G+V++ KV + L D+ ++ + NELS Sbjct 2123 VKEVKLNGVKKPVKVEGSVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL 2182 Query 1276 LGLKTIATHGIAAINSVPWS--KILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFT 1333 + T+ + V W KI+ K L + K + + Y + Sbjct 2183 VNSPTVREY-------VKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWF 2235 Query 1334 LLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFS----KLFTIA 1389 LL+ +T++++ + T +A K KLC A N +++ +S F +A Sbjct 2236 LLYCFSWIKFNTDNKVIYT--TEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVA 2290 Query 1390 MWLLLLSICLGSLICVTAAFGVLLSNFGA-PSYCNGVRELYLNSSNVTTM---------- 1438 LL L + + ++ + L N G P++ + + + V+T+ Sbjct 2291 TVFLLWFNFLYANVILSDFY---LPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLG 2347 Query 1439 ---DFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLAYMLF 1493 FC GS C +C SG D LD+Y A+ +Q V D +++ L E V+ Y L+ Sbjct 2348 YRSSFCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLY 2407 Query 1494 TKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY 1551 T FY L + MQ+ + F+ + W + + M P ++R YI + Y Sbjct 2408 TVCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYK 2467 Query 1552 IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNC 1611 ++ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC Sbjct 2468 VYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNC 2527 Query 1612 LNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKT 1671 LNC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V ++ L++++ GQ+ Sbjct 2528 LNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRV 2587 Query 1672 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLL 1731 Y+ S FV+++ L + KG +V+V + ++ D++ A+V+Y+Q + +P+L++ Sbjct 2588 YDDVNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMV 2645 Query 1732 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 1791 ++ L++ VS MFD YVD+ V + L + V AH+ L +GV L+ V+ T Sbjct 2646 EKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDT 2705 Query 1792 FVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGAC 1850 F+ AR+ +D+DV+TK + + + + ++ ++ T +SCNN + TY K + + DLG Sbjct 2706 FIGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVL 2765 Query 1851 IDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1910 I NA+H+ A VAK+ NV+ IW+V + LS L+ ++R A K + +LT V Sbjct 2766 IQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANV 2825 Query 1911 NVITTKISLKGG 1922 ++TT SLKGG Sbjct 2826 PILTTPFSLKGG 2837 Range 2: 1320 to 1468 Score:82.8 bits(203), Expect:4e-14, Method:Compositional matrix adjust., Identities:52/149(35%), Positives:77/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + N VIVN AN + HG GVAGA+ + A KE+ D +K Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VG +G L KK L++VGP+ + + LL+ AY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N++ Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQ 1468 Range 3: 834 to 964 Score:68.9 bits(167), Expect:5e-10, Method:Compositional matrix adjust., Identities:44/131(34%), Positives:69/131(52%), Gaps:7/131(5%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V ++ + ++ITF LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEE---ED 116 TL P + + T + LD + YLFD+ G+E + RMYCSF PD+E+ D Sbjct 894 ESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAAD 953 Query 117 DAECEEEEIDE 127 + +E + D+ Sbjct 954 VVDADENQDDD 964 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1598 to 2840 Score:484 bits(1245), Expect:5e-138, Method:Compositional matrix adjust., Identities:367/1276(29%), Positives:590/1276(46%), Gaps:97/1276(7%) Query 711 SLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHV 770 S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1598 SVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSA 1653 Query 771 NHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWAD 830 H+GK FF A + DE L +Y S L K W G + K ++ Sbjct 1654 IHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSN 1712 Query 831 NNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRET 890 NNCY++ L LQ L +KF + R+G F +L+LA + E D + Sbjct 1713 NNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDF 1772 Query 891 MTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGR 950 + L+ A+L A L +CK CG K GV+AVM+ GTL L G +I C CG Sbjct 1773 IRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG- 1830 Query 951 DATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGA 1010 D + Q F++ S P KL + AN +TG GHYTH+ K D Sbjct 1831 DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDAC 1888 Query 1011 HLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQ 1069 +++K+SE KG TD Y K T + +Y LD V +P L YY + YYT+ Sbjct 1889 NVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKP 1948 Query 1070 PIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVV 1127 I T + NFKL A+ LN GF E +T +P GDVV Sbjct 1949 IIKAQFRTFEKVEGVYTNFKLV--GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVV 2006 Query 1128 AIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTF----KPNTWCLRCLWSTKPVDTSNS 1183 Y + + G KP++W ++ + + +P+ C ++ PVD S Sbjct 2007 LASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEP 2065 Query 1184 FE--------------------VLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIEC 1223 + ++ E + AC S +++V + V Sbjct 2066 TDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDS-VEDQIVMEAQKKSSVTTV 2124 Query 1224 DVKTTEVVG---------NVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSL 1274 VK ++ G +V++ KV + L D+ ++ + NELS Sbjct 2125 AVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSR 2184 Query 1275 ALGLKTIATHGIAAINSVPW--SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVF 1332 + T+ + V W SK++ L + K + + Y + Sbjct 2185 LINSPTVREY-------VKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKW 2237 Query 1333 TLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFS----KLFTI 1388 LL+ +T++++ + T +A K KLC A N +++ +S F + Sbjct 2238 FLLYCFSWIKFNTDNKVIYT--TEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLV 2292 Query 1389 A-MWLLLLSICLGSLIC--------------VTAAFGVLLSNFGAPSYCN--GVRELYLN 1431 A ++LL + ++I V + + FG + C+ V +L Sbjct 2293 ATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYR 2352 Query 1432 SSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLA 1489 SS FC GS C +C SG D LD+Y ++ +Q V D +++ L E V+ Sbjct 2353 SS------FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDYISLFKLVVELVIG 2406 Query 1490 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFA 1547 Y L+T FY L + MQ+ + F+ + W + + M P ++R YI Sbjct 2407 YSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVT 2466 Query 1548 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 + Y ++ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2467 AMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKH 2526 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 1667 WNCLNC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V ++ L++++ Sbjct 2527 QWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERD 2586 Query 1668 GQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQP 1727 GQ+ Y+ S FV+++ L + KG +V+V + ++ D++ +A+V+Y+Q + +P Sbjct 2587 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2644 Query 1728 ILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDG 1787 +L++++ L++ VS MFD YV + V + L + V AH+ L +GV L+ Sbjct 2645 MLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2704 Query 1788 VLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRD 1846 V+ TFV AR+ +D+DV+TK + + + + ++ +EVT +SCNN + TY K + + D Sbjct 2705 VMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAAD 2764 Query 1847 LGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1906 LG I NA+H+ + VAK+ NV+ IW+V + LS L+ ++R A K + +LT Sbjct 2765 LGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQ 2824 Query 1907 RQVVNVITTKISLKGG 1922 V ++TT SLKGG Sbjct 2825 EANVPILTTPFSLKGG 2840 Range 2: 834 to 947 Score:67.8 bits(164), Expect:1e-09, Method:Compositional matrix adjust., Identities:43/114(38%), Positives:60/114(52%), Gaps:4/114(3%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V EV + ++I F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEE 113 TL P + + T + L+ YLFD+ GEE +SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1467 Score:60.1 bits(144), Expect:3e-07, Method:Compositional matrix adjust., Identities:54/149(36%), Positives:77/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + VIVN AN + HG GVAGA+ KA A E+ D +K Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VGG +G L KK L++VGP+ + E LL+ AY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N++ Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQ 1467 Range 4: 1047 to 1230 Score:40.4 bits(93), Expect:0.20, Method:Compositional matrix adjust., Identities:50/202(25%), Positives:82/202(40%), Gaps:21/202(10%) Query 755 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSE-AFEYYHTLDESFLGRYMSALNHTK 813 P ++ D+ K++ + E +T P+D T AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 814 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALI 873 V G S NC+L S L+ +Q L ++F +Q+ + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 874 LAYSNKTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMG 931 + + K++ + G V + L S K N C CG + L G++AV + G Sbjct 1161 VKSAPKSIILPQGGYVADFAYFFLSQC---SFKVHANWRCLKCGME-LKLQGLDAVFFYG 1216 Query 932 TLSYDNLKTGVSIPCVCGRDAT 953 + VS C CG T Sbjct 1217 DV--------VSHMCKCGNSMT 1230 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1650 to 2838 Score:483 bits(1243), Expect:1e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:570/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 2003 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2105 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2106 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2165 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2166 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2224 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2225 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2278 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2279 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2338 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2339 CDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2394 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2395 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2454 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2455 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2514 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2515 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2574 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2575 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2632 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2633 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2692 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2693 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2752 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK+ N+S IW + + L+ L+ +++ A K Sbjct 2753 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACVKTG 2812 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2813 LKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 1358 to 1514 Score:83.2 bits(204), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/157(35%), Positives:80/157(50%), Gaps:2/157(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 SAGIF SL + V QV + N+K ++ + Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 811 to 949 Score:72.0 bits(175), Expect:5e-11, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L + + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1147 to 1271 Score:44.3 bits(103), Expect:0.015, Method:Compositional matrix adjust., Identities:37/137(27%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDALFFYGDI--- 1259 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1260 -----VSHVCKCGHNMT 1271 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1620 to 2808 Score:483 bits(1242), Expect:1e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:570/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 1973 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2075 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2076 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2135 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2136 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2194 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2195 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2248 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2249 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2308 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2309 CDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2364 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2365 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2424 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2425 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2484 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2485 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2544 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2545 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2602 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2603 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2662 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2663 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2722 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK+ N+S IW + + L+ L+ +++ A K Sbjct 2723 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTG 2782 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2783 LKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 1328 to 1484 Score:83.2 bits(204), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/157(35%), Positives:80/157(50%), Gaps:2/157(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 SAGIF SL + V QV + N+K ++ + Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 811 to 949 Score:74.3 bits(181), Expect:1e-11, Method:Compositional matrix adjust., Identities:45/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L D + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1117 to 1241 Score:45.4 bits(106), Expect:0.007, Method:Compositional matrix adjust., Identities:38/137(28%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDAVFFYGDI--- 1229 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1230 -----VSHVCKCGHNMT 1241 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1620 to 2808 Score:483 bits(1243), Expect:1e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:570/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 1973 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2075 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2076 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2135 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2136 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2194 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2195 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2248 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2249 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2308 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2309 CDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2364 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2365 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2424 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2425 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2484 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2485 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2544 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2545 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2602 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2603 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2662 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2663 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2722 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK+ N+S IW + + L+ L+ +++ A K Sbjct 2723 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTG 2782 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2783 LKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 1328 to 1484 Score:83.6 bits(205), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/157(35%), Positives:80/157(50%), Gaps:2/157(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 SAGIF SL + V QV + N+K ++ + Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 811 to 949 Score:74.3 bits(181), Expect:1e-11, Method:Compositional matrix adjust., Identities:45/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L D + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1117 to 1241 Score:45.4 bits(106), Expect:0.006, Method:Compositional matrix adjust., Identities:38/137(28%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDAVFFYGDI--- 1229 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1230 -----VSHVCKCGHNMT 1241 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1598 to 2840 Score:483 bits(1243), Expect:1e-137, Method:Compositional matrix adjust., Identities:367/1276(29%), Positives:590/1276(46%), Gaps:97/1276(7%) Query 711 SLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHV 770 S+ ++++LL+ + V TVD N + V +G+ G + DG +VTK++ Sbjct 1598 SVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSA 1653 Query 771 NHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWAD 830 H+GK FF A + DE L +Y S L K W G + K ++ Sbjct 1654 IHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSN 1712 Query 831 NNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRET 890 NNCY++ L LQ L +KF + R+G F +L+LA + E D + Sbjct 1713 NNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDF 1772 Query 891 MTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGR 950 + L+ A+L A L +CK CG K GV+AVM+ GTL L G +I C CG Sbjct 1773 IRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCG- 1830 Query 951 DATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGA 1010 D + Q F++ S P KL + AN +TG GHYTH+ K D Sbjct 1831 DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDAC 1888 Query 1011 HLTKMSEYKGPVTDVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQ 1069 +++K+SE KG TD Y K T + +Y LD V +P L YY + YYT+ Sbjct 1889 NVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYTKP 1948 Query 1070 PIDL-VPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF-TKPASRELSVTFFPDLNGDVV 1127 I T + NFKL A+ LN GF E +T +P GDVV Sbjct 1949 IIKAQFRTFEKVEGVYTNFKLV--GHDIAEKLNAKLGFDCNSPFMEYKITEWPTATGDVV 2006 Query 1128 AIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTF----KPNTWCLRCLWSTKPVDTSNS 1183 Y + + G KP++W ++ + + +P+ C ++ PVD S Sbjct 2007 LASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEP 2065 Query 1184 FE--------------------VLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIEC 1223 + ++ E + AC S +++V + V Sbjct 2066 TDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKACASDS-VEDQIVMEAQKKSSVTTV 2124 Query 1224 DVKTTEVVG---------NVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSL 1274 VK ++ G +V++ KV + L D+ ++ + NELS Sbjct 2125 AVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSR 2184 Query 1275 ALGLKTIATHGIAAINSVPW--SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVF 1332 + T+ + V W SK++ L + K + + Y + Sbjct 2185 LINSPTVREY-------VKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKW 2237 Query 1333 TLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFS----KLFTI 1388 LL+ +T++++ + T +A K KLC A N +++ +S F + Sbjct 2238 FLLYCFSWIKFNTDNKVIYT--TEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLV 2292 Query 1389 A-MWLLLLSICLGSLIC--------------VTAAFGVLLSNFGAPSYCN--GVRELYLN 1431 A ++LL + ++I V + + FG + C+ V +L Sbjct 2293 ATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYR 2352 Query 1432 SSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQ-VTISSYKLD-LTILGLAAEWVLA 1489 SS FC GS C +C SG D LD+Y ++ +Q V D +++ L E V+ Sbjct 2353 SS------FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDYISLFKLVVELVIG 2406 Query 1490 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFA 1547 Y L+T FY L + MQ+ + F+ + W + + M P ++R YI Sbjct 2407 YSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVT 2466 Query 1548 SFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 + Y ++ H+M GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2467 AMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKH 2526 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKA 1667 WNCLNC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V ++ L++++ Sbjct 2527 QWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERD 2586 Query 1668 GQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQP 1727 GQ+ Y+ S FV+++ L + KG +V+V + ++ D++ +A+V+Y+Q + +P Sbjct 2587 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2644 Query 1728 ILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDG 1787 +L++++ L++ VS MFD YV + V + L + V AH+ L +GV L+ Sbjct 2645 MLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2704 Query 1788 VLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRD 1846 V+ TFV AR+ +D+DV+TK + + + + ++ +EVT +SCNN + TY K + + D Sbjct 2705 VMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAAD 2764 Query 1847 LGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1906 LG I NA+H+ + VAK+ NV+ IW+V + LS L+ ++R A K + +LT Sbjct 2765 LGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQ 2824 Query 1907 RQVVNVITTKISLKGG 1922 V ++TT SLKGG Sbjct 2825 EANVPILTTPFSLKGG 2840 Range 2: 834 to 947 Score:67.8 bits(164), Expect:1e-09, Method:Compositional matrix adjust., Identities:43/114(38%), Positives:60/114(52%), Gaps:4/114(3%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V EV + ++I F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEE 113 TL P + + T + L+ YLFD+ GEE +SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1467 Score:60.1 bits(144), Expect:3e-07, Method:Compositional matrix adjust., Identities:54/149(36%), Positives:77/149(51%), Gaps:2/149(1%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 +T NV D++K + VIVN AN + HG GVAGA+ KA A E+ D +K Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLLSA 311 G VGG +G L KK L++VGP+ + E LL+ AY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 312 GIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 GIF SL + V V + N++ Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQ 1467 Range 4: 1047 to 1230 Score:40.4 bits(93), Expect:0.21, Method:Compositional matrix adjust., Identities:50/202(25%), Positives:82/202(40%), Gaps:21/202(10%) Query 755 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSE-AFEYYHTLDESFLGRYMSALNHTK 813 P ++ D+ K++ + E +T P+D T AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 814 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALI 873 V G S NC+L S L+ +Q L ++F +Q+ + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 874 LAYSNKTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMG 931 + + K++ + G V + L S K N C CG + L G++AV + G Sbjct 1161 VKSAPKSIILPQGGYVADFAYFFLSQC---SFKVHANWRCLKCGME-LKLQGLDAVFFYG 1216 Query 932 TLSYDNLKTGVSIPCVCGRDAT 953 + VS C CG T Sbjct 1217 DV--------VSHMCKCGNSMT 1230 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1650 to 2838 Score:482 bits(1240), Expect:3e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:570/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 2003 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2105 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2106 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2165 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2166 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2224 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2225 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2278 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2279 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2338 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2339 CDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2394 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2395 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2454 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2455 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2514 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2515 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2574 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2575 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2632 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2633 VFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2692 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2693 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2752 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK+ N+S IW + + L+ L+ +++ A K Sbjct 2753 LKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACVKTG 2812 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2813 LKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 1358 to 1514 Score:83.2 bits(204), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/157(35%), Positives:80/157(50%), Gaps:2/157(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 SAGIF SL + V QV + N+K ++ + Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 811 to 949 Score:72.0 bits(175), Expect:5e-11, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L + + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1147 to 1271 Score:44.3 bits(103), Expect:0.016, Method:Compositional matrix adjust., Identities:37/137(27%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDALFFYGDI--- 1259 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1260 -----VSHVCKCGHNMT 1271 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1600 to 2788 Score:481 bits(1237), Expect:6e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:569/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 1953 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2055 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2056 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2115 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2116 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2174 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2175 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2228 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2229 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2288 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2289 CDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2344 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2345 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2404 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2405 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2464 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2465 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2524 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2525 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2582 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2583 VFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2642 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2643 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2702 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK N+S IW + + L+ L+ +++ A K Sbjct 2703 LKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACVKTG 2762 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2763 LKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 1308 to 1458 Score:83.2 bits(204), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/151(36%), Positives:77/151(50%), Gaps:2/151(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDK 340 SAGIF SL + V QV + N+K Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNK 1458 Range 3: 811 to 949 Score:72.4 bits(176), Expect:4e-11, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L + + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1097 to 1221 Score:45.4 bits(106), Expect:0.007, Method:Compositional matrix adjust., Identities:38/137(28%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1097 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1156 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++AV + G + Sbjct 1157 KAIVLPQGGYVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDAVFFYGDI--- 1209 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1210 -----VSHVCKCGHNMT 1221 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1600 to 2788 Score:480 bits(1236), Expect:9e-137, Method:Compositional matrix adjust., Identities:362/1226(30%), Positives:569/1226(46%), Gaps:65/1226(5%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 844 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 845 LEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 904 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 905 RVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVC-GRDATQYLVQQESSF 963 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 964 VMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVT 1023 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1024 DVFY-KETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLP-- 1080 D Y K + T T +Y LD V P L YY + YYT +PI +P Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1081 NASFDNFKLTCSNTKFADDLNQMTGFTKPASR-ELSVTFFPDLNGDVVAIDYRHYSASFK 1139 + + NFKL LN GF E VT +P GDVV Y + Sbjct 1953 DGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1140 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKP-VDTSNSFEVLAVEDTQGMDNL 1198 KG + KP++W + + + + KP + N + VL+V D++ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLT---------YFNKPSFKSENRYSVLSV------DSV 2055 Query 1199 ACESQQPTSEEVVENPTIQKEV-IECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAA 1257 + ESQ V+E+ KEV ++ KT ++ +I+ + +KV + L D+ Sbjct 2056 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2115 Query 1258 YVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAK 1317 Y+ + NELS + T+ + I + L ++ Q + Sbjct 2116 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPKIFKA 2174 Query 1318 RLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYV 1377 R + F ++ ++F +F L FT T IA ++ L L Sbjct 2175 RAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAFQTF 2228 Query 1378 KSPKFSKLFTIA-----MWL--LLLSICLGSL---------ICVTAAFGVLLSNFGAPSY 1421 + F K F + W L +++ I V + + FG + Sbjct 2229 RWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGLVTI 2288 Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKL--DLTI 1479 C+ +L + T FC GSF C +C SG D LD+Y A++ +Q + L +++ Sbjct 2289 CDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDYVSL 2344 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFI--SNSWLMWFIISIVQMAPVS 1537 + L E V+ Y L+T +FY L +Q+F + F+ + WL+ FI+ + M P Sbjct 2345 VKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANMLPAF 2404 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 ++R YI + Y + HI+ GC + C+ CYKRN + RV+C+TIV G+ R + + A Sbjct 2405 VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITA 2464 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2465 NGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVG 2524 Query 1658 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSAS 1717 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S D + +A Sbjct 2525 CMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFLNAV 2582 Query 1718 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1777 V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V AH+ Sbjct 2583 VFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNIAHA 2642 Query 1778 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTY 1836 L +GV L+ VL TFV R+ +D+DV+T+ + + + + + LE T ++ NN + TY Sbjct 2643 SLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLVPTY 2702 Query 1837 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNN 1896 K +N+ DLG I A+H+ VAK N+S IW + + L+ L+ +++ A K Sbjct 2703 LKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACVKTG 2762 Query 1897 IPFRLTCATTRQVVNVITTKISLKGG 1922 + +LT V ++TT SLKGG Sbjct 2763 LKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 1308 to 1464 Score:83.6 bits(205), Expect:2e-14, Method:Compositional matrix adjust., Identities:55/157(35%), Positives:80/157(50%), Gaps:2/157(1%) Query 192 LKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI 251 L +T NV DI+ A+ VIVN AN H+ HGGGVA A+ A KE+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 252 KLNGPLTVGGSCLLSGHNLAKKCLHVVGPNL--NAGEDIQLLKAAYENFNSQDILLAPLL 309 K G VG + +G L K L++VGP+ + + LL AY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 310 SAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQV 346 SAGIF SL + V QV + N+K ++ + Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1464 Range 3: 811 to 949 Score:72.4 bits(176), Expect:4e-11, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:70/139(50%), Gaps:4/139(2%) Query 4 KGVTFGED-TVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V E+ V++ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAE 119 L + + + L++ + YLFD+AG+E +SRMYC+F D E+ +E Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSE 930 Query 120 CEEEEIDETCEHEYGTEDD 138 E+ ID E ++D Sbjct 931 AVEDTIDGVVEDTINDDED 949 Range 4: 1097 to 1221 Score:45.4 bits(106), Expect:0.007, Method:Compositional matrix adjust., Identities:38/137(28%), Positives:60/137(43%), Gaps:14/137(10%) Query 819 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSN 878 +V GL S NC+L SVLL +Q+L KF A++ + + G +F +L Sbjct 1097 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1156 Query 879 KTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 K + + G V + L ++ + N C CG + L G++AV + G + Sbjct 1157 KAIVLPQGGYVADFAYWFLNQFDINAYA---NWCCLKCG-FSFDLNGLDAVFFYGDI--- 1209 Query 937 NLKTGVSIPCVCGRDAT 953 VS C CG + T Sbjct 1210 -----VSHVCKCGHNMT 1221 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 1357 to 2092 Score:310 bits(795), Expect:1e-83, Method:Compositional matrix adjust., Identities:234/755(31%), Positives:362/755(47%), Gaps:55/755(7%) Query 563 KYKGIKIQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEA 620 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHG +L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 621 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRT 679 +R +K P V ++S + + N + + +T E F+ V+ G Y W SG Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1472 Query 680 ELGVEFLK----RGDKIVY-----HTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIK 728 V + K G I Y + +++ V L+ ++ L+ R + I+ Sbjct 1473 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFS----DLEACRAYLTSRAAQQVNIE 1528 Query 729 VFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRS 788 V T+D N T +++ + T+ +Q G T+ G D++ P V G++ FV +D+ S Sbjct 1529 VLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSES 1586 Query 789 EAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL 845 E EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + L Sbjct 1587 EKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDML 1646 Query 846 -EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SA 903 ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SA Sbjct 1647 HDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSA 1706 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 K V C CG + TG+ A +Y G S + L++ + CVCG + LV+ + + Sbjct 1707 KMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPW 1766 Query 964 VMMSAPPAEYKLQQGT---FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEY 1018 +++S E K+ T + N + G GHY HI K+ L Y+ D LTK S+ Sbjct 1767 LLVSGL-NEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDM 1825 Query 1019 KGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQ 1077 K +T V+Y YT V Y LDGVT E+ P L YY KD YYT +P I P Sbjct 1826 KCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPAT 1885 Query 1078 PLPNASFDNFKLTCSNTKFADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAID 1130 LP + + N L + D N + GF TKP S++L+ + P+ +GDV+ + Sbjct 1886 ILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSE 1945 Query 1131 YRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVE 1190 + +Y+ +KKG L KPI+W N KPN LR L+ P+ N + VL Sbjct 1946 FSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDN 2005 Query 1191 DTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTE---VVGNVILKPSDEGVKVTQ 1247 +Q E P ++V P +++IE K V GN GV V Sbjct 2006 TSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVD 2057 Query 1248 ELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTI 1281 LG +L A YV+ NT + + N S L T+ Sbjct 2058 TLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2092 Range 2: 1103 to 1290 Score:132 bits(333), Expect:2e-29, Method:Compositional matrix adjust., Identities:75/188(40%), Positives:105/188(55%), Gaps:6/188(3%) Query 142 LPLEFGASAETV-RVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLK-----LT 195 LP++ AS V +V + + + L T+ ++P + P K + Sbjct 1103 LPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVIN 1162 Query 196 DNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNG 255 ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q+ESD+YI NG Sbjct 1163 NSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNG 1222 Query 256 PLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFG 315 PL VG S LL GH LA LHVVGP+ ED LLK Y+ FN I++ PL+SAGIF Sbjct 1223 PLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFS 1282 Query 316 AKPLQSLQ 323 P S + Sbjct 1283 VDPKVSFE 1290 Range 3: 849 to 957 Score:51.2 bits(121), Expect:1e-04, Method:Compositional matrix adjust., Identities:33/109(30%), Positives:58/109(53%), Gaps:1/109(0%) Query 2 PIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVAE 60 P K VTFG+ EV Y++V IT+++ +D +L + K + +TVE V +F V+ + Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYP 109 V+ L P+ G D++++ Y+++ G+ +SS M S P Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINP 957 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 1357 to 2092 Score:310 bits(794), Expect:2e-83, Method:Compositional matrix adjust., Identities:234/755(31%), Positives:362/755(47%), Gaps:55/755(7%) Query 563 KYKGIKIQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEA 620 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHG +L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 621 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRT 679 +R +K P V ++S + + N + + +T E F+ V+ G Y W SG Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1472 Query 680 ELGVEFLK----RGDKIVY-----HTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIK 728 V + K G I Y + +++ V L+ ++ L+ R + I+ Sbjct 1473 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFS----DLEACRAYLTSRAAQQVNIE 1528 Query 729 VFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRS 788 V T+D N T +++ + T+ +Q G T+ G D++ P V G++ FV +D+ S Sbjct 1529 VLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSES 1586 Query 789 EAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL 845 E EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + L Sbjct 1587 EKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDML 1646 Query 846 -EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SA 903 ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SA Sbjct 1647 HDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSA 1706 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 K V C CG + TG+ A +Y G S + L++ + CVCG + LV+ + + Sbjct 1707 KMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPW 1766 Query 964 VMMSAPPAEYKLQQGT---FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEY 1018 +++S E K+ T + N + G GHY HI K+ L Y+ D LTK S+ Sbjct 1767 LLVSGL-NEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDM 1825 Query 1019 KGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQ 1077 K +T V+Y YT V Y LDGVT E+ P L YY KD YYT +P I P Sbjct 1826 KCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPAT 1885 Query 1078 PLPNASFDNFKLTCSNTKFADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAID 1130 LP + + N L + D N + GF TKP S++L+ + P+ +GDV+ + Sbjct 1886 ILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSE 1945 Query 1131 YRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVE 1190 + +Y+ +KKG L KPI+W N KPN LR L+ P+ N + VL Sbjct 1946 FSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDN 2005 Query 1191 DTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTE---VVGNVILKPSDEGVKVTQ 1247 +Q E P ++V P +++IE K V GN GV V Sbjct 2006 TSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVD 2057 Query 1248 ELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTI 1281 LG +L A YV+ NT + + N S L T+ Sbjct 2058 TLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2092 Range 2: 1103 to 1290 Score:132 bits(333), Expect:2e-29, Method:Compositional matrix adjust., Identities:75/188(40%), Positives:105/188(55%), Gaps:6/188(3%) Query 142 LPLEFGASAETV-RVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLK-----LT 195 LP++ AS V +V + + + L T+ ++P + P K + Sbjct 1103 LPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVIN 1162 Query 196 DNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNG 255 ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q+ESD+YI NG Sbjct 1163 NSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNG 1222 Query 256 PLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFG 315 PL VG S LL GH LA LHVVGP+ ED LLK Y+ FN I++ PL+SAGIF Sbjct 1223 PLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFS 1282 Query 316 AKPLQSLQ 323 P S + Sbjct 1283 VDPKVSFE 1290 Range 3: 849 to 957 Score:51.2 bits(121), Expect:1e-04, Method:Compositional matrix adjust., Identities:33/109(30%), Positives:58/109(53%), Gaps:1/109(0%) Query 2 PIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVAE 60 P K VTFG+ EV Y++V IT+++ +D +L + K + +TVE V +F V+ + Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYP 109 V+ L P+ G D++++ Y+++ G+ +SS M S P Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINP 957 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 1364 to 2099 Score:309 bits(791), Expect:5e-83, Method:Compositional matrix adjust., Identities:233/755(31%), Positives:362/755(47%), Gaps:55/755(7%) Query 563 KYKGIKIQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEA 620 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHG +L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 621 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRT 679 +R +K P V ++S + + N + + +T E F+ V+ G Y W SG Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1479 Query 680 ELGVEFLK----RGDKIVY-----HTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIK 728 V + K G I Y + +++ V L+ ++ L+ R + I+ Sbjct 1480 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFS----DLEACRAYLTSRAAQQVNIE 1535 Query 729 VFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRS 788 V T+D N T +++ + T+ +Q G T+ G D++ P V G++ FV +D+ S Sbjct 1536 VLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV--ADNLSES 1593 Query 789 EAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL 845 E EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + L Sbjct 1594 EEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDML 1653 Query 846 -EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SA 903 ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SA Sbjct 1654 HDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSA 1713 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 K V C CG + TG+ A +Y G S + L++ + CVCG + LV+ + + Sbjct 1714 KMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTPW 1773 Query 964 VMMSAPPAEYKLQQGT---FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEY 1018 +++S E K+ T + N + G GHY H+ K+ L Y+ D LTK S+ Sbjct 1774 LLVSGL-NEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSDM 1832 Query 1019 KGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQ 1077 K +T V+Y + YT V Y LDGVT E+ P L YY KD YYT +P I P Sbjct 1833 KCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPAT 1892 Query 1078 PLPNASFDNFKLTCSNTKFADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAID 1130 LP + + N L + D N + GF TKP S++L+ + P+ +GDV+ + Sbjct 1893 ILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSE 1952 Query 1131 YRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVE 1190 + +Y+ +KKG L KPI+W N KPN LR L+ P+ N + VL Sbjct 1953 FNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDN 2012 Query 1191 DTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTE---VVGNVILKPSDEGVKVTQ 1247 +Q + E P E+V +++IE K V GN GV V Sbjct 2013 TSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVD 2064 Query 1248 ELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTI 1281 LG +L A YV+ NT + + N S L T+ Sbjct 2065 TLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2099 Range 2: 1168 to 1297 Score:124 bits(311), Expect:8e-27, Method:Compositional matrix adjust., Identities:62/130(48%), Positives:84/130(64%), Gaps:0/130(0%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q+ESD+YI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGI 313 +GPL VG S LL G+ LA L VVGP+ ED LLK Y+ FN I++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 314 FGAKPLQSLQ 323 F P S + Sbjct 1288 FSVDPKVSFE 1297 Range 3: 849 to 1045 Score:52.4 bits(124), Expect:5e-05, Method:Compositional matrix adjust., Identities:55/205(27%), Positives:87/205(42%), Gaps:32/205(15%) Query 2 PIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVAE 60 P K VTFG+ EV Y++V IT+++ +D +L + K + +TVE V +F V+ + Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYP----------- 109 V+ L P+ G D++++ Y+++ G+ +SS M S P Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFI 968 Query 110 ------------PDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEE 157 DEE A E +D+ E E+D LPLE + E+V E Sbjct 969 EDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEED---LPLE--TALESVEAEV 1023 Query 158 EEEEDWLDDTTEQSEIEPEPEPTPE 182 E + D E EP+ E Sbjct 1024 GES---ISDELCVVETAKAQEPSVE 1045 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 1364 to 2099 Score:308 bits(789), Expect:8e-83, Method:Compositional matrix adjust., Identities:233/755(31%), Positives:362/755(47%), Gaps:55/755(7%) Query 563 KYKGIKIQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEA 620 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHG +L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 621 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSY-SGQRT 679 +R +K P V ++S + + N + + +T E F+ V+ G Y W SG Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1479 Query 680 ELGVEFLK----RGDKIVY-----HTLESPVEFHLDGEVLSLDKLKSLLSLREVK--TIK 728 V + K G I Y + +++ V L+ ++ L+ R + I+ Sbjct 1480 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFS----DLEACRAYLTSRAAQQVNIE 1535 Query 729 VFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRS 788 V T+D N T +++ + T+ +Q G T+ G D++ P V G++ FV +D+ S Sbjct 1536 VLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV--ADNLSES 1593 Query 789 EAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQL 845 E EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + L Sbjct 1594 EEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDML 1653 Query 846 -EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SA 903 ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SA Sbjct 1654 HDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSA 1713 Query 904 KRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSF 963 K V C CG + TG+ A +Y G S + L++ + CVCG + LV+ + + Sbjct 1714 KMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTPW 1773 Query 964 VMMSAPPAEYKLQQGT---FLCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSEY 1018 +++S E K+ T + N + G GHY H+ K+ L Y+ D LTK S+ Sbjct 1774 LLVSGL-NEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSDM 1832 Query 1019 KGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQP-IDLVPTQ 1077 K +T V+Y + YT V Y LDGVT E+ P L YY KD YYT +P I P Sbjct 1833 KCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPAT 1892 Query 1078 PLPNASFDNFKLTCSNTKFADD-----LNQMTGF--TKPASRELSVTFFPDLNGDVVAID 1130 LP + + N L + D N + GF TKP S++L+ + P+ +GDV+ + Sbjct 1893 ILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSE 1952 Query 1131 YRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVE 1190 + +Y+ +KKG L KPI+W N KPN LR L+ P+ N + VL Sbjct 1953 FNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDN 2012 Query 1191 DTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTE---VVGNVILKPSDEGVKVTQ 1247 +Q + E P E+V +++IE K V GN GV V Sbjct 2013 TSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVD 2064 Query 1248 ELGHEDLMAAYVE-NTSITIKKPNELSLALGLKTI 1281 LG +L A YV+ NT + + N S L T+ Sbjct 2065 TLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2099 Range 2: 1168 to 1297 Score:124 bits(311), Expect:8e-27, Method:Compositional matrix adjust., Identities:62/130(48%), Positives:84/130(64%), Gaps:0/130(0%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q+ESD+YI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 254 NGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGI 313 +GPL VG S LL G+ LA L VVGP+ ED LLK Y+ FN I++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 314 FGAKPLQSLQ 323 F P S + Sbjct 1288 FSVDPKVSFE 1297 Range 3: 849 to 1045 Score:52.0 bits(123), Expect:6e-05, Method:Compositional matrix adjust., Identities:55/205(27%), Positives:87/205(42%), Gaps:32/205(15%) Query 2 PIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVL-NEKCSVYTVESGTEVTEFACVVAE 60 P K VTFG+ EV Y++V IT+++ +D +L + K + +TVE V +F V+ + Sbjct 849 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 908 Query 61 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYP----------- 109 V+ L P+ G D++++ Y+++ G+ +SS M S P Sbjct 909 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFI 968 Query 110 ------------PDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEE 157 DEE A E +D+ E E+D LPLE + E+V E Sbjct 969 EDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEED---LPLE--TALESVEAEV 1023 Query 158 EEEEDWLDDTTEQSEIEPEPEPTPE 182 E + D E EP+ E Sbjct 1024 GES---ISDELCVVETAKAQEPSVE 1045 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 1937 to 2483 Score:195 bits(495), Expect:2e-48, Method:Compositional matrix adjust., Identities:168/616(27%), Positives:272/616(44%), Gaps:94/616(15%) Query 1332 FTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAM- 1390 FT L + T K T + VK +AK G+ +S K++ + A+ Sbjct 1937 FTWLLSMFTLCK-----------TAVTTGDVKIMAKAPQRTGVVLKRSLKYNLKASAAVL 1985 Query 1391 ----WLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFP 1446 WLL L LI + +L FG ++C+ Y SN D+C+GS Sbjct 1986 KSKWWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYA-KSNFVKDDYCDGSLG 2044 Query 1447 CSICLSGLDSLDSYPALETIQVTISS--------YKLDLTILGLAAEWVLAYMLFTKFFY 1498 C +CL G L + L+ + I+ + + + +L ++ ++L+ + Sbjct 2045 CKMCLFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLY----F 2100 Query 1499 LLGLSAIMQVFFGYFASHFISNSWLMWFII--SIVQMAPVSAMVRMYIFFASFYYIWKSY 1556 + + + + VF GY ++ W + FI I V+ +V I F Sbjct 2101 VAQMISTVGVFLGYKETN-----WFLHFIPFDVICDELLVTVIVIKVISFVR-------- 2147 Query 1557 VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDT 1616 H++ GC + C+ C K R R TIVNG++RSFYV ANGG FCK H + C++CD+ Sbjct 2148 -HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDS 2206 Query 1617 FCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY---------FDKA 1667 + GSTFI+ EV+R+L K + PT + ++D V +NG LY FD Sbjct 2207 YGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDIT 2266 Query 1668 GQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQP 1727 K + + LD+ N G+ + + K+ASVY+SQL+C+P Sbjct 2267 ESKYSCKEVFKNCNVLDDFIVFNNNGT--------------NVTQVKNASVYFSQLLCRP 2312 Query 1728 ILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDG 1787 I L+D L+S + S + + + AY+D +F + L A ++ A + A G+++ Sbjct 2313 IKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD 2367 Query 1788 VLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKV-ENMTPRD 1846 F SA +H D+ ++ S NNF+ +Y K E ++ D Sbjct 2368 --HEFTSAISN------------------AHRCDVLLSDLSFNNFVSSYAKPEEKLSAYD 2407 Query 1847 LGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1906 L C+ A+ +NA V ++W+ KD+ SLS + RK I +K + F LT Sbjct 2408 LACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINEN 2467 Query 1907 RQVVNVITTKISLKGG 1922 + V + T I K G Sbjct 2468 QAVTQIPATSIVAKQG 2483 Range 2: 1262 to 1450 Score:86.3 bits(212), Expect:3e-15, Method:Compositional matrix adjust., Identities:66/196(34%), Positives:99/196(50%), Gaps:10/196(5%) Query 175 PEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGA 234 P+ E +E +N F + DNVA D+ + IVNAAN +L HGGG+A A Sbjct 1262 PKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKA 1317 Query 235 LNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAA 294 L+ T G +Q+ S ++I L G + VG ++ +L + +VVGP E L+KA Sbjct 1318 LDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHERDLLIKAY 1375 Query 295 YENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT---QVYIAVNDKALYEQVVMDYL 351 N Q L P+LS GIFG K SL+V + T +V++ + + + + L Sbjct 1376 NTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGL 1435 Query 352 DNLKPRVEAPKQEEPP 367 N++ +VE PK E P Sbjct 1436 VNVQ-KVEQPKIEPKP 1450 Range 3: 1595 to 1916 Score:65.9 bits(159), Expect:4e-09, Method:Compositional matrix adjust., Identities:84/340(25%), Positives:139/340(40%), Gaps:32/340(9%) Query 719 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 778 L E K I + T D N+H V ++ QQ G D++ P + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELLT 1654 Query 779 VLPSDDTLRSEAFE---YYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 835 D + F+ + T+D S Y SA+ V G+ +K +DNNC++ Sbjct 1655 KAIDVDWVEFYGFKDAVTFATVDHSAFA-YESAV----------VNGIRVLKTSDNNCWV 1703 Query 836 SSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLL 895 ++V +ALQ + F + L A+ + GD F A + + G+ GD +T+T L Sbjct 1704 NAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLS 1763 Query 896 QH-ANLESAKRVLNVVCKHCGQK-TTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDAT 953 ++ AN + C C K ++ + + + ++ D ++ G CV G Sbjct 1764 KYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY---CVHGIKYY 1820 Query 954 QYLVQQESSFVMMSA----PPAEYKLQQGTFLCANEYTGNYQCGHYT-HITAKETLYRID 1008 + +++S P A+ +L G A ++G GHYT + TAK+++Y D Sbjct 1821 SRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--D 1876 Query 1009 GAHLTKMSEYKGPVTDVF----YKETSYTTTIKPVSYKLD 1044 G K VT V Y T KPV +LD Sbjct 1877 GDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Range 4: 1038 to 1291 Score:49.3 bits(116), Expect:4e-04, Method:Compositional matrix adjust., Identities:61/266(23%), Positives:109/266(40%), Gaps:20/266(7%) Query 817 FPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAY 876 F ++ GL +K DNNC+++SV+L +Q + A+Q + G A Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ----FFKMGRVAKMIERCYTA 1093 Query 877 SNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 G +GDV M LL+ +L + V++ C C +G AV++ T + Sbjct 1094 EQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCS-CTSGRLEESG--AVLFC-TPTKK 1147 Query 937 NLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHY- 995 G + C R T +Q FV P +C++ + G CGHY Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 996 THITAKETLYRIDGAHLTKMSEYKG-PVTDVFYKETSYTT----TIKPVSYKLDGVTYTE 1050 T+I ++ +DG + K+ + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNLC--VDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEE 1265 Query 1051 --IEPKLDGYYKKDNAYYTEQPIDLV 1074 ++ KL+ + DN + + +D V Sbjct 1266 FVVKEKLNAFLVHDNVAFYQGDVDTV 1291 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E] Sequence ID: P0C6U2.1 Length: 4085 Range 1: 1919 to 2483 Score:195 bits(495), Expect:2e-48, Method:Compositional matrix adjust., Identities:172/635(27%), Positives:281/635(44%), Gaps:102/635(16%) Query 1320 AQRVFN-------NYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 1372 AQ+ F+ N++ + FT L + T K T + VK +AK Sbjct 1919 AQKFFDFGDFLIHNFVIF-FTWLLSMFTLCK-----------TAVTTGDVKIMAKAPQRT 1966 Query 1373 GINYVKSPKFSKLFTIAM-----WLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRE 1427 G+ +S K++ + A+ WLL L LI + +L FG ++C+ Sbjct 1967 GVVLKRSLKYNLKASAAVLKSKWWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVN 2026 Query 1428 LYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISS--------YKLDLTI 1479 Y SN D+C+GS C +CL G L + L+ + I+ + + + + Sbjct 2027 GYA-KSNFVKDDYCDGSLGCKMCLFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLL 2085 Query 1480 LGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFII--SIVQMAPVS 1537 L ++ ++L+ ++ + + + VF GY ++ W + FI I V+ Sbjct 2086 LIFGDNYLRCFLLY----FVAQMISTVGVFLGYKETN-----WFLHFIPFDVICDELLVT 2136 Query 1538 AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 +V I F H++ GC + C+ C K R R TIVNG++RSFYV A Sbjct 2137 VIVIKVISFVR---------HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNA 2187 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 NGG FCK H + C++CD++ GSTFI+ EV+R+L K + PT + ++D V +N Sbjct 2188 NGGSKFCKKHRFFCVDCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFEN 2247 Query 1658 GALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 1708 G LY FD K + + LD+ N G+ Sbjct 2248 GFYRLYSCETFWRYNFDITESKYSCKEVFKNCNVLDDFIVFNNNGT-------------- 2293 Query 1709 DESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 1768 + + K+ASVY+SQL+C+PI L+D L+S + S + + + AY+D +F + L Sbjct 2294 NVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDL 2348 Query 1769 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDS 1828 A ++ A + A G+++ F SA +H D+ ++ S Sbjct 2349 NANMSLAECKRALGLSISD--HEFTSAISN------------------AHRCDVLLSDLS 2388 Query 1829 CNNFMLTYNKV-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQ 1887 NNF+ +Y K E ++ DL C+ A+ +NA V ++W+ KD+ SLS + RK Sbjct 2389 FNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKY 2448 Query 1888 IRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 I +K + F LT + V + T I K G Sbjct 2449 IVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQG 2483 Range 2: 1262 to 1450 Score:86.3 bits(212), Expect:3e-15, Method:Compositional matrix adjust., Identities:66/196(34%), Positives:99/196(50%), Gaps:10/196(5%) Query 175 PEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGA 234 P+ E +E +N F + DNVA D+ + IVNAAN +L HGGG+A A Sbjct 1262 PKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKA 1317 Query 235 LNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAA 294 L+ T G +Q+ S ++I L G + VG ++ +L + +VVGP E L+KA Sbjct 1318 LDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHERDLLIKAY 1375 Query 295 YENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT---QVYIAVNDKALYEQVVMDYL 351 N Q L P+LS GIFG K SL+V + T +V++ + + + + L Sbjct 1376 NTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGL 1435 Query 352 DNLKPRVEAPKQEEPP 367 N++ +VE PK E P Sbjct 1436 VNVQ-KVEQPKIEPKP 1450 Range 3: 1595 to 1916 Score:66.2 bits(160), Expect:3e-09, Method:Compositional matrix adjust., Identities:84/340(25%), Positives:139/340(40%), Gaps:32/340(9%) Query 719 LSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 778 L E K I + T D N+H V ++ QQ G D++ P + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELLT 1654 Query 779 VLPSDDTLRSEAFE---YYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 835 D + F+ + T+D S Y SA+ V G+ +K +DNNC++ Sbjct 1655 KAIDVDWVEFYGFKDAVTFATVDHSAFA-YESAV----------VNGIRVLKTSDNNCWV 1703 Query 836 SSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLL 895 ++V +ALQ + F + L A+ + GD F A + + G+ GD +T+T L Sbjct 1704 NAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLS 1763 Query 896 QH-ANLESAKRVLNVVCKHCGQK-TTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDAT 953 ++ AN + C C K ++ + + + ++ D ++ G CV G Sbjct 1764 KYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY---CVHGIKYY 1820 Query 954 QYLVQQESSFVMMSA----PPAEYKLQQGTFLCANEYTGNYQCGHYT-HITAKETLYRID 1008 + +++S P A+ +L G A ++G GHYT + TAK+++Y D Sbjct 1821 SRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--D 1876 Query 1009 GAHLTKMSEYKGPVTDVF----YKETSYTTTIKPVSYKLD 1044 G K VT V Y T KPV +LD Sbjct 1877 GDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Range 4: 1038 to 1291 Score:49.7 bits(117), Expect:3e-04, Method:Compositional matrix adjust., Identities:61/266(23%), Positives:109/266(40%), Gaps:20/266(7%) Query 817 FPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAY 876 F ++ GL +K DNNC+++SV+L +Q + A+Q + G A Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ----FFKMGRVAKMIERCYTA 1093 Query 877 SNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYD 936 G +GDV M LL+ +L + V++ C C +G AV++ T + Sbjct 1094 EQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCS-CTSGRLEESG--AVLFC-TPTKK 1147 Query 937 NLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHY- 995 G + C R T +Q FV P +C++ + G CGHY Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 996 THITAKETLYRIDGAHLTKMSEYKG-PVTDVFYKETSYTT----TIKPVSYKLDGVTYTE 1050 T+I ++ +DG + K+ + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNLC--VDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEE 1265 Query 1051 --IEPKLDGYYKKDNAYYTEQPIDLV 1074 ++ KL+ + DN + + +D V Sbjct 1266 FVVKEKLNAFLVHDNVAFYQGDVDTV 1291 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512] Sequence ID: P0C6F6.1 Length: 4128 Range 1: 1984 to 2530 Score:187 bits(474), Expect:7e-46, Method:Compositional matrix adjust., Identities:161/600(27%), Positives:273/600(45%), Gaps:60/600(10%) Query 1330 YVFTLLFQLCTFTKSTNSRIRASLPT---TIAKNSVKSVAKLCLDAGINYVKSPKFSKL- 1385 Y+F+LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 1386 FTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSF 1445 F L S+ L +L + F + + G P C + Y NS+ D+C G+ Sbjct 2034 FQYIKVFLKFSLVLYTLYALMFMF-IRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 1446 PCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAI 1505 C ICL G + L + I + L IL L +++ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIWQHLKD-PLIGNILPLF--YLVFLIIFGGFFVRIGITYF 2146 Query 1506 MQVFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGC 1563 + + A + N WL+ + P ++M + + I H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1564 TSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTF 1623 +C+ C K + TRV TI+ G+ +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1624 ISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNL 1683 I+D +A +LS K + PT ++ I+D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1684 DNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDST 1743 D L+ N + + +VF+ S + + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 1744 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 1803 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1804 DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKV-ENMTPRDLGACIDCNARHINAQV 1862 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1863 AKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 NV ++W KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1317 to 1437 Score:69.3 bits(168), Expect:3e-10, Method:Compositional matrix adjust., Identities:46/123(37%), Positives:60/123(48%), Gaps:2/123(1%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 S N +VNAAN L HGGG+A AL+ T G +Q S+ Y+ NG + VG L+ Sbjct 1317 SVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE- 1375 Query 271 AKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVR 330 L+VVGP L KA F + + L PLLS GIF +SL + V Sbjct 1376 -HSILNVVGPRKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVG 1434 Query 331 TQV 333 +V Sbjct 1435 DRV 1437 Range 3: 1634 to 1932 Score:65.5 bits(158), Expect:6e-09, Method:Compositional matrix adjust., Identities:78/317(25%), Positives:125/317(39%), Gaps:29/317(9%) Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 +L E K ++V T D + HT + S TYGQQ G ++ VT +KP + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 780 LPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 836 +P+ D + F +HTLD + M ++ V G ++ +DNNC+++ Sbjct 1692 VPNVDWDKHYGFVDAGIFHTLDHT-----MFVFDNN------VVNGKRVLRTSDNNCWIN 1740 Query 837 SVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 896 +V L LQ KF LQ+ + GD A F + + GE D T+ + + Sbjct 1741 AVCLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISR 1800 Query 897 HANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIP-CVCGRDATQY 955 + + +L C +T + V+ ++ LK G+ CV G Sbjct 1801 FLKPQGSVEMLRATSTTCDGTCST----KRVVSTPVVNASVLKVGLDDGNCVHGLPLVDR 1856 Query 956 LVQQESSFVMMSA---PPAEYKLQQGTFLCANEYT----GNYQCGHYTHITAKETLYRID 1008 +V + ++ + P + L YT GHYT + KE D Sbjct 1857 VVSVNGTVIITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYT-VFDKEAKLMFD 1915 Query 1009 GAHLTKMSEYKGPVTDV 1025 G L PVT V Sbjct 1916 GDVLKPCDLNVSPVTSV 1932 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 1984 to 2530 Score:186 bits(473), Expect:1e-45, Method:Compositional matrix adjust., Identities:161/600(27%), Positives:273/600(45%), Gaps:60/600(10%) Query 1330 YVFTLLFQLCTFTKSTNSRIRASLPT---TIAKNSVKSVAKLCLDAGINYVKSPKFSKL- 1385 Y+F+LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 1386 FTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSF 1445 F L S+ L +L + F + + G P C + Y NS+ D+C G+ Sbjct 2034 FQYIKVFLKFSLVLYTLYALMFMF-IRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 1446 PCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAI 1505 C ICL G + L + I + L IL L +++ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIWQHLKD-PLIGNILPLF--YLVFLIIFGGFFVRIGITYF 2146 Query 1506 MQVFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGC 1563 + + A + N WL+ + P ++M + + I H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1564 TSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTF 1623 +C+ C K + TRV TI+ G+ +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1624 ISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNL 1683 I+D +A +LS K + PT ++ I+D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1684 DNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDST 1743 D L+ N + + +VF+ S + + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 1744 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 1803 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1804 DVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKV-ENMTPRDLGACIDCNARHINAQV 1862 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1863 AKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 NV ++W KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1317 to 1437 Score:70.1 bits(170), Expect:2e-10, Method:Compositional matrix adjust., Identities:46/123(37%), Positives:60/123(48%), Gaps:2/123(1%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 S N +VNAAN L HGGG+A AL+ T G +Q S+ Y+ NG + VG L+ Sbjct 1317 SVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE- 1375 Query 271 AKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVR 330 L+VVGP L KA F + + L PLLS GIF +SL + V Sbjct 1376 -HSILNVVGPRKGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVG 1434 Query 331 TQV 333 +V Sbjct 1435 DRV 1437 Range 3: 1634 to 1932 Score:65.1 bits(157), Expect:7e-09, Method:Compositional matrix adjust., Identities:78/317(25%), Positives:125/317(39%), Gaps:29/317(9%) Query 720 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 779 +L E K ++V T D + HT + S TYGQQ G ++ VT +KP + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 780 LPSDDTLRSEAF---EYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 836 +P+ D + F +HTLD + M ++ V G ++ +DNNC+++ Sbjct 1692 VPNVDWDKHYGFVDAGIFHTLDHT-----MFVFDNN------VVNGKRVLRTSDNNCWIN 1740 Query 837 SVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 896 +V L LQ KF LQ+ + GD A F + + GE D T+ + + Sbjct 1741 AVCLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISR 1800 Query 897 HANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIP-CVCGRDATQY 955 + + +L C +T + V+ ++ LK G+ CV G Sbjct 1801 FLKPQGSVEMLRATSTTCDGTCST----KRVVSTPVVNASVLKVGLDDGNCVHGLPLVDR 1856 Query 956 LVQQESSFVMMSA---PPAEYKLQQGTFLCANEYT----GNYQCGHYTHITAKETLYRID 1008 +V + ++ + P + L YT GHYT + KE D Sbjct 1857 VVSVNGTVIITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYT-VFDKEAKLMFD 1915 Query 1009 GAHLTKMSEYKGPVTDV 1025 G L PVT V Sbjct 1916 GDVLKPCDLNVSPVTSV 1932 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 1895 to 2461 Score:177 bits(448), Expect:9e-43, Method:Compositional matrix adjust., Identities:167/625(27%), Positives:274/625(43%), Gaps:80/625(12%) Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 AQ+ F + +V + T+ S S +R T+I K+ +K +AK G+ +S Sbjct 1895 AQKFFQ-FGDFVMNNIVLFLTWLLSMFSLLR----TSIMKHDIKVIAKAPKRTGVILTRS 1949 Query 1380 PKF---SKLFTIAM-WLLLLSICLGSLICVTAAFGVLLSNFGAPS---YCNGVRELYLNS 1432 K+ S LF I W +++++ L+ V + +P C + Y S Sbjct 1950 FKYNIRSALFVIKQKWCVIVTLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKS 2009 Query 1433 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK--LDLTILGLAAEWVLAY 1490 + + +C S C +CL SY + T +K D ++ L +L Sbjct 2010 TFNKDI-YCGNSMVCKMCLF------SYQEFNDLDHTSLVWKHIRDPILISLQPFVILVI 2062 Query 1491 ML-FTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASF 1549 +L F + GL + F F S F+ WF+ P + F A+F Sbjct 2063 LLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FLATF 2115 Query 1550 YY--IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 I HI+ GC ++ C+ C K R RV TI+NGM +SFYV ANGG FC H Sbjct 2116 IVCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKH 2175 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY---- 1663 N+ C+NCD+F G+TFI+ ++AR+L K + PT + I+D V NG LY Sbjct 2176 NFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDT 2235 Query 1664 -----FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASV 1718 FD K + L + L+N N GS + + K+A V Sbjct 2236 FWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS--------------NITQIKNACV 2281 Query 1719 YYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSE 1778 Y+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ A + Sbjct 2282 YFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSMAECK 2336 Query 1779 LAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNK 1838 G+ V D + + +H D+ ++ S NNF ++Y K Sbjct 2337 ATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAK 2376 Query 1839 VEN-MTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNI 1897 E+ ++ D+ C+ ++ +N V ++ ++W VKD+ +LS++ +K + K + Sbjct 2377 PEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGL 2436 Query 1898 PFRLTCATTRQVVNVITTKISLKGG 1922 F LT + + V T I K G Sbjct 2437 TFLLTFNDNQAITQVPATSIVAKQG 2461 Range 2: 1265 to 1438 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:62/179(35%), Positives:86/179(48%), Gaps:10/179(5%) Query 197 NVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGP 256 NV DI + +VNAAN +L HGGGVA A++ T G +Q S DYI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 257 LTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGA 316 L VG +L +VVGP E L++A I L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGV 1382 Query 317 K---PLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLD--NLKPRVEAPKQEEPPNTE 370 + L++L C QV++ +++ EQ V+ +LD +L P ++ +P E Sbjct 1383 RIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGLDLTPVIDDVDVVKPFRVE 1438 Range 3: 1587 to 1742 Score:51.2 bits(121), Expect:1e-04, Method:Compositional matrix adjust., Identities:46/169(27%), Positives:75/169(44%), Gaps:16/169(9%) Query 732 TVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSD-DTLRSEA 790 T D N+ +V+ S + G+Q G DG D + EG VLP + DT+ S A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEG----VLPINTDTVLSVA 1633 Query 791 FEYYHTLDESFLGRYMSALNHTKKWKFPQ--VGGLTSIKWADNNCYLSSVLLALQQLEVK 848 E F + A K + +P VGG + DNNC++++ + LQ L+ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 849 FNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQH 897 F + L + + GD F + I + + G+ GD E ++ L ++ Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEY 1742 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63] Sequence ID: P0C6U6.1 Length: 4060 Range 1: 1895 to 2461 Score:176 bits(446), Expect:1e-42, Method:Compositional matrix adjust., Identities:167/625(27%), Positives:272/625(43%), Gaps:80/625(12%) Query 1320 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 1379 AQ+ F + +V + T+ S S +R T+I K+ +K +AK G+ +S Sbjct 1895 AQKFFQ-FGDFVMNNIVLFLTWLLSMFSLLR----TSIMKHDIKVIAKAPKRTGVILTRS 1949 Query 1380 PKF---SKLFTIAM-WLLLLSICLGSLICVTAAFGVLLSNFGAPS---YCNGVRELYLNS 1432 K+ S LF I W +++++ L+ V + +P C + Y Sbjct 1950 FKYNIRSALFVIKQKWCVIVTLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGY-EK 2008 Query 1433 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK--LDLTILGLAAEWVLAY 1490 S +C S C +CL SY + T +K D ++ L +L Sbjct 2009 STFNKDIYCGNSMVCKMCLF------SYQEFNDLDHTSLVWKHIRDPILISLQPFVILVI 2062 Query 1491 ML-FTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASF 1549 +L F + GL + F F S F+ WF+ P + F A+F Sbjct 2063 LLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FLATF 2115 Query 1550 YY--IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTH 1607 I HI+ GC ++ C+ C K R RV TI+NGM +SFYV ANGG FC H Sbjct 2116 IVCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKH 2175 Query 1608 NWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY---- 1663 N+ C+NCD+F G+TFI+ ++AR+L K + PT + I+D V NG LY Sbjct 2176 NFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDT 2235 Query 1664 -----FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASV 1718 FD K + L + L+N N GS + + K+A V Sbjct 2236 FWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS--------------NITQIKNACV 2281 Query 1719 YYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSE 1778 Y+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ A + Sbjct 2282 YFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSMAECK 2336 Query 1779 LAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNK 1838 G+ V D + + +H D+ ++ S NNF ++Y K Sbjct 2337 ATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAK 2376 Query 1839 VEN-MTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNI 1897 E+ ++ D+ C+ ++ +N V ++ ++W VKD+ +LS++ +K + K + Sbjct 2377 PEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGL 2436 Query 1898 PFRLTCATTRQVVNVITTKISLKGG 1922 F LT + + V T I K G Sbjct 2437 TFLLTFNDNQAITQVPATSIVAKQG 2461 Range 2: 1265 to 1438 Score:84.0 bits(206), Expect:1e-14, Method:Compositional matrix adjust., Identities:62/179(35%), Positives:86/179(48%), Gaps:10/179(5%) Query 197 NVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGP 256 NV DI + +VNAAN +L HGGGVA A++ T G +Q S DYI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 257 LTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGA 316 L VG +L +VVGP E L++A I L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGV 1382 Query 317 K---PLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLD--NLKPRVEAPKQEEPPNTE 370 + L++L C QV++ +++ EQ V+ +LD +L P ++ +P E Sbjct 1383 RIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGLDLTPVIDDVDVVKPFRVE 1438 Range 3: 1587 to 1742 Score:51.6 bits(122), Expect:8e-05, Method:Compositional matrix adjust., Identities:46/169(27%), Positives:75/169(44%), Gaps:16/169(9%) Query 732 TVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSD-DTLRSEA 790 T D N+ +V+ S + G+Q G DG D + EG VLP + DT+ S A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEG----VLPINTDTVLSVA 1633 Query 791 FEYYHTLDESFLGRYMSALNHTKKWKFPQ--VGGLTSIKWADNNCYLSSVLLALQQLEVK 848 E F + A K + +P VGG + DNNC++++ + LQ L+ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 849 FNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQH 897 F + L + + GD F + I + + G+ GD E ++ L ++ Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEY 1742 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 2050 to 2516 Score:174 bits(440), Expect:7e-42, Method:Compositional matrix adjust., Identities:146/518(28%), Positives:227/518(43%), Gaps:63/518(12%) Query 1417 GAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETI---------- 1466 G+P C+ V Y NSS ++C S C +CL G L + + + Sbjct 2050 GSP-VCDDVVAGYANSS-FDKNEYCN-SVICKVCLYGYQELSDFSHTQVVWQHLRDPLIG 2106 Query 1467 QVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF 1526 V Y L I G +V A L+ F YL L VF G S +WF Sbjct 2107 NVMPFFYLAFLAIFG--GVYVKAITLYFIFQYLNSLG----VFLGLQQS--------IWF 2152 Query 1527 IISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 1586 + Q+ P + F + H+ GC ++C+ C K R RV TI Sbjct 2153 L----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIF 2208 Query 1587 NGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQS 1646 G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + PT + Sbjct 2209 QGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPA 2268 Query 1647 SYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKS 1706 + ++D V NG +LY K S + + L+ S+ + IVF+ Sbjct 2269 TILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFIVFNNNG 2324 Query 1707 KCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPME 1766 + + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S +F + Sbjct 2325 S-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLS 2381 Query 1767 KLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVT 1825 + + + D V L TF +A + +H D+ +T Sbjct 2382 SCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHRYDVLLT 2418 Query 1826 GDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQL 1884 S NNF +Y K E P D+ C+ A+ +N V ++ ++W V+D+++LSE+ Sbjct 2419 DMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEET 2478 Query 1885 RKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 RK I K I F LT R + T I+ K G Sbjct 2479 RKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKG 2516 Range 2: 1317 to 1479 Score:87.4 bits(215), Expect:1e-15, Method:Compositional matrix adjust., Identities:60/171(35%), Positives:88/171(51%), Gaps:11/171(6%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 276 +VNAAN L HGGG+A A++ T G +QK S+DYIK +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 277 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGA---KPLQSLQVCVQTVRTQV 333 VVGP L+KA F + + L PL+S GIF + L + CV + Sbjct 1375 VVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCKC 1434 Query 334 YIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPV 384 + DK + ++ Y+D L V+A +E +T + + + V QKPV Sbjct 1435 F-CYGDKE--REAIIKYMDGL---VDAIFKEALVDTTPVQEDVQQVSQKPV 1479 Range 3: 1631 to 1932 Score:50.1 bits(118), Expect:2e-04, Method:Compositional matrix adjust., Identities:82/327(25%), Positives:131/327(40%), Gaps:37/327(11%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K++ + T D ++ V+ + TYGQQ GP ++ VT KP V V+P+ + Sbjct 1631 KSVVIKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADVVAK--VVPNAN 1688 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQ--VGGLTSIKWADNNCYLSSVLLAL 842 ++ ++ D++ G + L+HT + FP V G IK DNNC+++ L L Sbjct 1689 ------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRRVIKTTDNNCWVNVTCLQL 1738 Query 843 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQH---AN 899 Q +F + LQ + GD A F + + G+ D + L ++ A Sbjct 1739 QFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAG 1798 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIP-CVCGRD-ATQYLV 957 + +RV + C C ++ T V A + LK GV C G + + +V Sbjct 1799 SVTIERVTHDGC-CCSKRVVTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVV 1848 Query 958 QQESSFVMMSAPPAEYKLQQGTFLCANEYT-----GNYQCGHYTHITAKETLYRIDGAHL 1012 + ++ V+ P FL YT GN GHYT + DG Sbjct 1849 VKGTTIVVNVGKPV--VAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMVH-DGDAF 1905 Query 1013 TKMSEYKGPVTDVFYKETSYTTTIKPV 1039 PVT+V E + PV Sbjct 1906 VPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 Range 4: 1073 to 1165 Score:40.8 bits(94), Expect:0.16, Method:Compositional matrix adjust., Identities:31/101(31%), Positives:49/101(48%), Gaps:8/101(7%) Query 815 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 874 + F GGL ++ + NNC+++S L+ LQ L + + PA+ E + R G C Sbjct 1073 FDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGI-VDDPAM-ELFSAGRVGPMVRKC---Y 1127 Query 875 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCG 915 +G LGDV + L + +L + K +VVC CG Sbjct 1128 ESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CG 1165 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 2050 to 2516 Score:173 bits(439), Expect:8e-42, Method:Compositional matrix adjust., Identities:146/518(28%), Positives:227/518(43%), Gaps:63/518(12%) Query 1417 GAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETI---------- 1466 G+P C+ V Y NSS ++C S C +CL G L + + + Sbjct 2050 GSP-VCDDVVAGYANSS-FDKNEYCN-SVICKVCLYGYQELSDFSHTQVVWQHLRDPLIG 2106 Query 1467 QVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF 1526 V Y L I G +V A L+ F YL L VF G S +WF Sbjct 2107 NVMPFFYLAFLAIFG--GVYVKAITLYFIFQYLNSLG----VFLGLQQS--------IWF 2152 Query 1527 IISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 1586 + Q+ P + F + H+ GC ++C+ C K R RV TI Sbjct 2153 L----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIF 2208 Query 1587 NGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQS 1646 G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + PT + Sbjct 2209 QGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPA 2268 Query 1647 SYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKS 1706 + ++D V NG +LY K S + + L+ S+ + IVF+ Sbjct 2269 TILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFIVFNNNG 2324 Query 1707 KCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPME 1766 + + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S +F + Sbjct 2325 S-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLS 2381 Query 1767 KLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVT 1825 + + + D V L TF +A + +H D+ +T Sbjct 2382 SCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHRYDVLLT 2418 Query 1826 GDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQL 1884 S NNF +Y K E P D+ C+ A+ +N V ++ ++W V+D+++LSE+ Sbjct 2419 DMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEET 2478 Query 1885 RKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1922 RK I K I F LT R + T I+ K G Sbjct 2479 RKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKG 2516 Range 2: 1317 to 1589 Score:87.8 bits(216), Expect:1e-15, Method:Compositional matrix adjust., Identities:86/282(30%), Positives:133/282(47%), Gaps:29/282(10%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 276 +VNAAN L HGGG+A A++ T G +QK S+DYIK +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 277 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGA---KPLQSLQVCVQTVRTQV 333 VVGP L+KA F + + L PL+S GIF + L + CV + Sbjct 1375 VVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCKC 1434 Query 334 YIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPV--DVKP-KI 390 + DK + ++ Y+D L V+A +E +T + + + V QKPV + +P +I Sbjct 1435 F-CYGDKE--REAIIKYMDGL---VDAIFKEALVDTTPVQEDVQQVSQKPVLPNFEPFRI 1488 Query 391 KA------CIDEVTTTLEETKFL--TNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAP 442 + C E +L K + TN L F + GK +D + E ++ +K Sbjct 1489 EGAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSV-GKCLNDVTSGALLEAINVFKKSNK 1547 Query 443 YM-VGDVITSG-----DITCVVIPSKKAGGTTEMLSRALKKV 478 + G+ +T IT VV+P + +RA+ KV Sbjct 1548 TVPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKV 1589 Range 3: 1631 to 1932 Score:50.1 bits(118), Expect:3e-04, Method:Compositional matrix adjust., Identities:82/327(25%), Positives:131/327(40%), Gaps:37/327(11%) Query 725 KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 K++ + T D ++ V+ + TYGQQ GP ++ VT KP V V+P+ + Sbjct 1631 KSVVIKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADVVAK--VVPNAN 1688 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQ--VGGLTSIKWADNNCYLSSVLLAL 842 ++ ++ D++ G + L+HT + FP V G IK DNNC+++ L L Sbjct 1689 ------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRRVIKTTDNNCWVNVTCLQL 1738 Query 843 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQH---AN 899 Q +F + LQ + GD A F + + G+ D + L ++ A Sbjct 1739 QFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAG 1798 Query 900 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIP-CVCGRDAT-QYLV 957 + +RV + C C ++ T V A + LK GV C G + + +V Sbjct 1799 SVTIERVTHDGC-CCSKRVVTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVV 1848 Query 958 QQESSFVMMSAPPAEYKLQQGTFLCANEYT-----GNYQCGHYTHITAKETLYRIDGAHL 1012 + ++ V+ P FL YT GN GHYT + DG Sbjct 1849 VKGTTIVVNVGKPV--VAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMVH-DGDAF 1905 Query 1013 TKMSEYKGPVTDVFYKETSYTTTIKPV 1039 PVT+V E + PV Sbjct 1906 VPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 Range 4: 1073 to 1165 Score:40.8 bits(94), Expect:0.16, Method:Compositional matrix adjust., Identities:31/101(31%), Positives:49/101(48%), Gaps:8/101(7%) Query 815 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 874 + F GGL ++ + NNC+++S L+ LQ L + + PA+ E + R G C Sbjct 1073 FDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGI-VDDPAM-ELFSAGRVGPMVRKC---Y 1127 Query 875 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCG 915 +G LGDV + L + +L + K +VVC CG Sbjct 1128 ESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CG 1165 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6V5.1 Length: 3953 Range 1: 1800 to 2260 Score:164 bits(415), Expect:6e-39, Method:Compositional matrix adjust., Identities:144/512(28%), Positives:222/512(43%), Gaps:82/512(16%) Query 1437 TMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKF 1496 + +C G F C +CL DSL Y +++ YK + G+ W Y++F Sbjct 1800 VLRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAAS--GINFNWNWLYLVFLIL 1854 Query 1497 F---------------YLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVR 1541 F YL+ S ++Q G+ L WF V + Sbjct 1855 FVKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFT 1895 Query 1542 MYIFFASFYYIWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVY 1596 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1896 HFNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVY 1955 Query 1597 ANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVK 1656 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++V V Sbjct 1956 TNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVV 2015 Query 1657 NGALHLYFDKA-GQKTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCDESA-- 1712 + ++L + A K + F D L +A K +L I DG C+ + Sbjct 2016 DDFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAH 2075 Query 1713 ----SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 1768 +K+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2076 ALEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD---- 2130 Query 1769 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDLEVTG 1826 TA G D +LS TKD ++ H+ ++E TG Sbjct 2131 -----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTG 2170 Query 1827 DSCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLR 1885 D N + +Y + +TPRD G I+ +A N +V + V +W D + LS+ Sbjct 2171 DGFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCL 2228 Query 1886 KQIRSAAKKNNIPFRLTCATTRQVVNVITTKI 1917 K + SA K+ F +T + +QV++ T K+ Sbjct 2229 KYLISATVKSGGRFFITKSGAKQVISCHTQKL 2260 Range 2: 1222 to 1412 Score:69.7 bits(169), Expect:3e-10, Method:Compositional matrix adjust., Identities:51/198(26%), Positives:90/198(45%), Gaps:9/198(4%) Query 773 EGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN 832 E K +P+ D E Y+ LD Y+ L +KW ++W D N Sbjct 1222 EDKEILFIPTTDKTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGN 1275 Query 833 CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMT 892 C++SS ++ LQ +++F L EA+ + GD +F A A N VG+ D + Sbjct 1276 CWISSAIVLLQAAKIRFKG-FLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLA 1334 Query 893 HLLQHANLESAKRVL-NVVCKHCGQKTTTLTGVEAVMY-MGTLSYDNLKTGVSIPCVCGR 950 +L +H + + +L V +CG K+ L G+EA + + + + KT S CG Sbjct 1335 NLAEHFDADYTNALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGA 1394 Query 951 DATQYLVQQESSFVMMSA 968 +T +++ ++++ A Sbjct 1395 SSTDEVIEASLPYLLLFA 1412 Range 3: 870 to 1200 Score:55.1 bits(131), Expect:8e-06, Method:Compositional matrix adjust., Identities:88/355(25%), Positives:140/355(39%), Gaps:53/355(14%) Query 60 EAVVKTL-QPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 E VK L Q V D+L + G +D A L S + F + + A Sbjct 870 EGAVKALPQKVIDVLGDWGEAVD----AQEQLCQQESTRVISEKSVEGFTGSCDAMAEQA 925 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEE-------EEEDWLDDTTEQS 171 EE+EI E ++D P + ET +E +E+ + E+ Sbjct 926 IVEEQEIVPVVEQ---SQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVSQEKEEP 982 Query 172 EIEPEPE------------------PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSAN 213 ++E EP T E+P +F Y ++A V I K Sbjct 983 QVEQEPTLVVKAQREKKAKKFKVKPATCEKP--KFLEYKTCVGDLA---VVIAKALDEFK 1037 Query 214 PMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK 273 IVNAAN H+ HGGGVA A+ + DY+K +GP + + Sbjct 1038 EFCIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 274 CL-HVVGPNLNAGEDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAKPLQSLQVCVQTVR 330 C+ +VVGP + L AAY++ ++ + P+LS+GIFG ++ + +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 Query 331 TQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVD 385 + + + L + +++D KQ+ TED + +SVV KP D Sbjct 1151 -EAFKGCAIRVLLFSLSQEHIDYFDATC---KQKTIYLTEDG-VKYRSVVLKPGD 1200 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 1801 to 2260 Score:163 bits(413), Expect:1e-38, Method:Compositional matrix adjust., Identities:144/511(28%), Positives:222/511(43%), Gaps:82/511(16%) Query 1438 MDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFF 1497 + +C G F C +CL DSL Y +++ YK + G+ W Y++F F Sbjct 1801 LRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAAS--GINFNWNWLYLVFLILF 1855 Query 1498 ---------------YLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRM 1542 YL+ S ++Q G+ L WF V + Sbjct 1856 VKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFTH 1896 Query 1543 YIFFASFYYIWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYA 1597 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1897 FNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYT 1956 Query 1598 NGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKN 1657 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++V V + Sbjct 1957 NSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVD 2016 Query 1658 GALHLYFDKA-GQKTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCDESA--- 1712 ++L + A K + F D L +A K +L I DG C+ + Sbjct 2017 DFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHA 2076 Query 1713 ---SKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 1769 +K+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2077 LEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD----- 2130 Query 1770 ALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDLEVTGD 1827 TA G D +LS TKD ++ H+ ++E TGD Sbjct 2131 ----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTGD 2171 Query 1828 SCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRK 1886 N + +Y + +TPRD G I+ +A N +V + V +W D + LS+ K Sbjct 2172 GFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCLK 2229 Query 1887 QIRSAAKKNNIPFRLTCATTRQVVNVITTKI 1917 + SA K+ F +T + +QV++ T K+ Sbjct 2230 YLISATVKSGGRFFITKSGAKQVISCHTQKL 2260 Range 2: 1222 to 1412 Score:69.7 bits(169), Expect:3e-10, Method:Compositional matrix adjust., Identities:51/198(26%), Positives:90/198(45%), Gaps:9/198(4%) Query 773 EGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN 832 E K +P+ D E Y+ LD Y+ L +KW ++W D N Sbjct 1222 EDKEILFIPTTDKTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGN 1275 Query 833 CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMT 892 C++SS ++ LQ +++F L EA+ + GD +F A A N VG+ D + Sbjct 1276 CWISSAIVLLQAAKIRFKG-FLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLA 1334 Query 893 HLLQHANLESAKRVL-NVVCKHCGQKTTTLTGVEA-VMYMGTLSYDNLKTGVSIPCVCGR 950 +L +H + + +L V +CG K+ L G+EA + + + + KT S CG Sbjct 1335 NLAEHFDADYTNALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGA 1394 Query 951 DATQYLVQQESSFVMMSA 968 +T +++ ++++ A Sbjct 1395 SSTDEVIEASLPYLLLFA 1412 Range 3: 870 to 1200 Score:53.9 bits(128), Expect:2e-05, Method:Compositional matrix adjust., Identities:88/355(25%), Positives:140/355(39%), Gaps:53/355(14%) Query 60 EAVVKTL-QPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDA 118 E VK L Q V D+L + G +D A L S + F + + A Sbjct 870 EGAVKALPQKVIDVLGDWGEAVD----AQEQLCQQESTRVISEKSVEGFTGSCDAMAEQA 925 Query 119 ECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEE-------EEEDWLDDTTEQS 171 EE+EI E ++D P + ET +E +E+ + E+ Sbjct 926 IVEEQEIVPVVEQ---SQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVSQEKEEP 982 Query 172 EIEPEPE------------------PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSAN 213 ++E EP T E+P +F Y ++A V I K Sbjct 983 QVEQEPTLVVKAQREKKAKKFKVKPATCEKP--KFLEYKTCVGDLA---VVIAKALDEFK 1037 Query 214 PMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK 273 IVNAAN H+ HGGGVA A+ + DY+K +GP + + Sbjct 1038 EFCIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 274 CL-HVVGPNLNAGEDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAKPLQSLQVCVQTVR 330 C+ +VVGP + L AAY++ ++ + P+LS+GIFG ++ + +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 Query 331 TQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQKPVD 385 + + + L + +++D KQ+ TED + +SVV KP D Sbjct 1151 -EAFKGCAIRVLLFSLSQEHIDYFDATC---KQKTIYLTEDG-VKYRSVVLKPGD 1200 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6V3.1 Length: 3951 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6V4.1 Length: 3951 Range 1: 1798 to 2258 Score:162 bits(409), Expect:3e-38, Method:Compositional matrix adjust., Identities:141/507(28%), Positives:221/507(43%), Gaps:72/507(14%) Query 1437 TMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKF 1496 + +C F C +CL DSL Y +++ YK + G W Y++F Sbjct 1798 VLRYCADDFICRVCLHDKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLIL 1852 Query 1497 FY--LLGLSAIMQVFFGYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFF 1546 F + G V Y + + NS +L WF V + + F Sbjct 1853 FVKPVAGF-----VIICYCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFM 1898 Query 1547 ASFYYIWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGR 1601 + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY N G Sbjct 1899 GAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGY 1958 Query 1602 GFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALH 1661 FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD + + ++ Sbjct 1959 NFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVN 2018 Query 1662 LYFDKAGQ-KTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCDESA------S 1713 L + A K + F D L +A K +L I DG C+ + + Sbjct 2019 LKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEA 2078 Query 1714 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1773 K+A++YY+Q +C+PIL+LDQAL + VS + D S+ SV Sbjct 2079 KNAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD--------- 2128 Query 1774 TAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDLEVTGDSCNN 1831 TA G D +LS TKD ++ H+ D++ TGD N Sbjct 2129 TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTN 2173 Query 1832 FMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRS 1890 + +Y +TPRD G I+ +A N +V + V +W + + LS+ K + S Sbjct 2174 VIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLIS 2231 Query 1891 AAKKNNIPFRLTCATTRQVVNVITTKI 1917 A K+ + F +T + +QV+ T K+ Sbjct 2232 ATVKSGVRFFITKSGAKQVIACHTQKL 2258 Range 2: 1202 to 1410 Score:65.1 bits(157), Expect:7e-09, Method:Compositional matrix adjust., Identities:57/220(26%), Positives:95/220(43%), Gaps:14/220(6%) Query 752 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNH 811 QFG Y V + E K +P+ D EYY LD Y+ L Sbjct 1202 QFGQVYAKNKIVFTAD---DVEDKEILYVPTTD---KSILEYY-GLDAQKYVIYLQTL-- 1252 Query 812 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCA 871 +KW ++W D NC++SS ++ LQ +++F L EA+ + GD +F A Sbjct 1253 AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKG-FLTEAWAKLLGGDPTDFVA 1311 Query 872 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVL--NVVCKHCGQKTTTLTGVEA-VM 928 A VG+ D + +L +H + + L V C +CG K+ L G+EA + Sbjct 1312 WCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSC-NCGIKSYELRGLEACIQ 1370 Query 929 YMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSA 968 + + + KT S CG + T +++ ++++ A Sbjct 1371 PVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFA 1410 Range 3: 1025 to 1198 Score:50.4 bits(119), Expect:2e-04, Method:Compositional matrix adjust., Identities:53/188(28%), Positives:84/188(44%), Gaps:19/188(10%) Query 203 VDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGS 262 V I K IVNAAN H+ HG GVA A+ + +DY+K +GP Sbjct 1025 VVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---- 1080 Query 263 CLLSGHNLAK--KCL-HVVGPNLNAGEDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAK 317 L + K +C+ +VVGP + L AAY+N ++ + P+LS GIFG Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV- 1138 Query 318 PLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEK 377 ++ + +R + + + L + +++D KQ+ TED + + Sbjct 1139 ---DFKMSIDAMR-EAFEGCTIRVLLFSLSQEHIDYFDVTC---KQKTIYLTEDG-VKYR 1190 Query 378 SVVQKPVD 385 S+V KP D Sbjct 1191 SIVLKPGD 1198 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 1799 to 2258 Score:161 bits(407), Expect:4e-38, Method:Compositional matrix adjust., Identities:141/506(28%), Positives:221/506(43%), Gaps:72/506(14%) Query 1438 MDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFF 1497 + +C F C +CL DSL Y +++ YK + G W Y++F F Sbjct 1799 LRYCADDFICRVCLHDKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILF 1853 Query 1498 Y--LLGLSAIMQVFFGYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFA 1547 + G V Y + + NS +L WF V + + F Sbjct 1854 VKPVAGF-----VIICYCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMG 1899 Query 1548 SFYYIWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG 1602 + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY N G Sbjct 1900 AGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN 1959 Query 1603 FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHL 1662 FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD + + ++L Sbjct 1960 FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNL 2019 Query 1663 YFDKAGQ-KTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCDESA------SK 1714 + A K + F D L +A K +L I DG C+ + +K Sbjct 2020 KYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAK 2079 Query 1715 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1774 +A++YY+Q +C+PIL+LDQAL + VS + D S+ SV T Sbjct 2080 NAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------T 2129 Query 1775 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDLEVTGDSCNNF 1832 A G D +LS TKD ++ H+ D++ TGD N Sbjct 2130 AALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNV 2174 Query 1833 MLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + +Y +TPRD G I+ +A N +V + V +W + + LS+ K + SA Sbjct 2175 IPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISA 2232 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKI 1917 K+ + F +T + +QV+ T K+ Sbjct 2233 TVKSGVRFFITKSGAKQVIACHTQKL 2258 Range 2: 1202 to 1410 Score:65.1 bits(157), Expect:6e-09, Method:Compositional matrix adjust., Identities:57/220(26%), Positives:95/220(43%), Gaps:14/220(6%) Query 752 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNH 811 QFG Y V + E K +P+ D EYY LD Y+ L Sbjct 1202 QFGQVYAKNKIVFTAD---DVEDKEILYVPTTD---KSILEYY-GLDAQKYVIYLQTL-- 1252 Query 812 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCA 871 +KW ++W D NC++SS ++ LQ +++F L EA+ + GD +F A Sbjct 1253 AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKG-FLTEAWAKLLGGDPTDFVA 1311 Query 872 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVL--NVVCKHCGQKTTTLTGVEA-VM 928 A VG+ D + +L +H + + L V C +CG K+ L G+EA + Sbjct 1312 WCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSC-NCGIKSYELRGLEACIQ 1370 Query 929 YMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSA 968 + + + KT S CG + T +++ ++++ A Sbjct 1371 PVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFA 1410 Range 3: 1025 to 1198 Score:50.4 bits(119), Expect:2e-04, Method:Compositional matrix adjust., Identities:53/188(28%), Positives:84/188(44%), Gaps:19/188(10%) Query 203 VDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGS 262 V I K IVNAAN H+ HG GVA A+ + +DY+K +GP Sbjct 1025 VVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---- 1080 Query 263 CLLSGHNLAK--KCL-HVVGPNLNAGEDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAK 317 L + K +C+ +VVGP + L AAY+N ++ + P+LS GIFG Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV- 1138 Query 318 PLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEK 377 ++ + +R + + + L + +++D KQ+ TED + + Sbjct 1139 ---DFKMSIDAMR-EAFEGCTIRVLLFSLSQEHIDYFDVTC---KQKTIYLTEDG-VKYR 1190 Query 378 SVVQKPVD 385 S+V KP D Sbjct 1191 SIVLKPGD 1198 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 1799 to 2258 Score:161 bits(407), Expect:4e-38, Method:Compositional matrix adjust., Identities:141/506(28%), Positives:221/506(43%), Gaps:72/506(14%) Query 1438 MDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFF 1497 + +C F C +CL DSL Y +++ YK + G W Y++F F Sbjct 1799 LRYCADDFICRVCLHDKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILF 1853 Query 1498 Y--LLGLSAIMQVFFGYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFA 1547 + G V Y + + NS +L WF V + + F Sbjct 1854 VKPVAGF-----VIICYCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMG 1899 Query 1548 SFYYIWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG 1602 + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY N G Sbjct 1900 AGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN 1959 Query 1603 FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHL 1662 FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD + + ++L Sbjct 1960 FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNL 2019 Query 1663 YFDKAGQ-KTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCDESA------SK 1714 + A K + F D L +A K +L I DG C+ + +K Sbjct 2020 KYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAK 2079 Query 1715 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1774 +A++YY+Q +C+PIL+LDQAL + VS + D S+ SV T Sbjct 2080 NAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------T 2129 Query 1775 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDLEVTGDSCNNF 1832 A G D +LS TKD ++ H+ D++ TGD N Sbjct 2130 AALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNV 2174 Query 1833 MLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSA 1891 + +Y +TPRD G I+ +A N +V + V +W + + LS+ K + SA Sbjct 2175 IPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISA 2232 Query 1892 AKKNNIPFRLTCATTRQVVNVITTKI 1917 K+ + F +T + +QV+ T K+ Sbjct 2233 TVKSGVRFFITKSGAKQVIACHTQKL 2258 Range 2: 1202 to 1410 Score:65.1 bits(157), Expect:7e-09, Method:Compositional matrix adjust., Identities:57/220(26%), Positives:95/220(43%), Gaps:14/220(6%) Query 752 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNH 811 QFG Y V + E K +P+ D EYY LD Y+ L Sbjct 1202 QFGQVYAKNKIVFTAD---DVEDKEILYVPTTD---KSILEYY-GLDAQKYVIYLQTL-- 1252 Query 812 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCA 871 +KW ++W D NC++SS ++ LQ +++F L EA+ + GD +F A Sbjct 1253 AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKG-FLTEAWAKLLGGDPTDFVA 1311 Query 872 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVL--NVVCKHCGQKTTTLTGVEA-VM 928 A VG+ D + +L +H + + L V C +CG K+ L G+EA + Sbjct 1312 WCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSC-NCGIKSYELRGLEACIQ 1370 Query 929 YMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSA 968 + + + KT S CG + T +++ ++++ A Sbjct 1371 PVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFA 1410 Range 3: 1025 to 1198 Score:50.4 bits(119), Expect:2e-04, Method:Compositional matrix adjust., Identities:53/188(28%), Positives:84/188(44%), Gaps:19/188(10%) Query 203 VDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGS 262 V I K IVNAAN H+ HG GVA A+ + +DY+K +GP Sbjct 1025 VVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---- 1080 Query 263 CLLSGHNLAK--KCL-HVVGPNLNAGEDIQLLKAAYENFNSQDIL--LAPLLSAGIFGAK 317 L + K +C+ +VVGP + L AAY+N ++ + P+LS GIFG Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV- 1138 Query 318 PLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEK 377 ++ + +R + + + L + +++D KQ+ TED + + Sbjct 1139 ---DFKMSIDAMR-EAFEGCTIRVLLFSLSQEHIDYFDVTC---KQKTIYLTEDG-VKYR 1190 Query 378 SVVQKPVD 385 S+V KP D Sbjct 1191 SIVLKPGD 1198 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6V2.1 Length: 4017 Range 1: 1921 to 2364 Score:152 bits(384), Expect:3e-35, Method:Compositional matrix adjust., Identities:133/499(27%), Positives:219/499(43%), Gaps:73/499(14%) Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILG 1481 CNG + Y NSS + + C S C CL+ D L + + +QVT +K D Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 1482 LAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF-------IISIVQMA 1534 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 1535 PVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFY 1594 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 1595 VYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVA 1654 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 1655 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 1705 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 1706 SKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 1765 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 1766 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVT 1825 + K L E + L+ STF A +H + +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 1826 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQ 1883 S NNF + K ++ D+G C+ +A+ +NA+V S++W +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1884 LRKQIRSAAKKNNIPFRLT 1902 +K + + + F LT Sbjct 2346 AQKVLVKTFVEEGVNFSLT 2364 Range 2: 1288 to 1482 Score:64.3 bits(155), Expect:1e-08, Method:Compositional matrix adjust., Identities:58/212(27%), Positives:94/212(44%), Gaps:20/212(9%) Query 151 ETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQF--TGYLKLTDNVAIKCVDIVKE 208 + +VE+ E++ +++ E E P ++ + F G L ++ ++ Sbjct 1288 QEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLE- 1346 Query 209 AQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGH 268 P VIVNAAN LKH GGVA A++ T G + + S DY+K N + G + Sbjct 1347 -----PDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENV 1401 Query 269 NLAKKCLHVVGP-NLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQ 327 L+ VGP N ++ + +L + +L PL+S GIF + SLQ ++ Sbjct 1402 IEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK 1461 Query 328 TVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 359 T VND+ L V Y D + +E Sbjct 1462 T--------VNDRGLN---VFVYTDQERQTIE 1482 Range 3: 1488 to 1751 Score:46.2 bits(108), Expect:0.003, Method:Compositional matrix adjust., Identities:71/287(25%), Positives:115/287(40%), Gaps:31/287(10%) Query 726 TIKVFTTVDNTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 +I V T DN N V TYG+Q G + DVT P G+ V+ + D Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQK--VIKAID 1545 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSI--KWADNNCYLSSVLLAL 842 + +Y D + SA +H +KF V I K DNNC+++++ LAL Sbjct 1546 I---DWQAHYGFRDAA----AFSASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 843 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 902 Q+L+ ++ P ++ + F ++ S GE GD E M H L Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 903 AKRVL--NVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKT-GVSIPCVCGRDATQYLVQQ 959 + ++ C C + VE ++G + L G CV G + Q Sbjct 1657 CEIIVTHTTACDKCAK-------VEK--FVGPVVAAPLAIHGTDETCVHGVSVNVKVTQI 1707 Query 960 ESSFVMMS--APPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETL 1004 + + + S P L+ ++C Y+G+ + GHYT+ + L Sbjct 1708 KGTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 Range 4: 1075 to 1266 Score:45.1 bits(105), Expect:0.007, Method:Compositional matrix adjust., Identities:53/205(26%), Positives:85/205(41%), Gaps:15/205(7%) Query 815 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 874 +K + G +K DNNC++++ LQ + FN EA+ + + GD +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 875 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLS 934 A + G GD + +L + +AK VL C CG+K L E ++ T Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVL---ERAVFKLTPL 1183 Query 935 YDNLKTGVSIPCVCGRDATQYLVQQESSFV--MMSAPPAEYKLQQGTFLCANEYTGNYQC 992 ++ GV C+ V+ FV ++S E + A YTG Q Sbjct 1184 KESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHA-VYTGTTQN 1242 Query 993 GHYTHITAKETLYRIDGAHLTKMSE 1017 GHY + E Y +DG + + + Sbjct 1243 GHYM-VDDIEHGYCVDGMGIKPLKK 1266 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 1921 to 2364 Score:152 bits(383), Expect:3e-35, Method:Compositional matrix adjust., Identities:133/499(27%), Positives:219/499(43%), Gaps:73/499(14%) Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILG 1481 CNG + Y NSS + + C S C CL+ D L + + +QVT +K D Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 1482 LAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF-------IISIVQMA 1534 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 1535 PVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFY 1594 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 1595 VYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVA 1654 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 1655 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 1705 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 1706 SKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 1765 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 1766 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVT 1825 + K L E + L+ STF A +H + +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 1826 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQ 1883 S NNF + K ++ D+G C+ +A+ +NA+V S++W +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1884 LRKQIRSAAKKNNIPFRLT 1902 +K + + + F LT Sbjct 2346 AQKVLVKTFVEEGVNFSLT 2364 Range 2: 1288 to 1540 Score:64.3 bits(155), Expect:1e-08, Method:Compositional matrix adjust., Identities:72/276(26%), Positives:118/276(42%), Gaps:28/276(10%) Query 151 ETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQF--TGYLKLTDNVAIKCVDIVKE 208 + +VE+ E++ +++ E E P ++ + F G L ++ ++ Sbjct 1288 QEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLE- 1346 Query 209 AQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGH 268 P VIVNAAN LKH GGVA A++ T G + + S DY+K N + G + Sbjct 1347 -----PDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENV 1401 Query 269 NLAKKCLHVVGP-NLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQ 327 L+ VGP N ++ + +L + +L PL+S GIF + SLQ ++ Sbjct 1402 IEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK 1461 Query 328 TVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPP--NTEDSKTEEKSVVQKPVD 385 T VND+ L V Y D + +E P TED+ E+ V Sbjct 1462 T--------VNDRGLN---VFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKT 1510 Query 386 VKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKL 421 ++K T + + K +TN+L D+ K+ Sbjct 1511 YGEQLKG------TVVIKDKDVTNQLPSAFDVGQKV 1540 Range 3: 1488 to 1751 Score:45.8 bits(107), Expect:0.004, Method:Compositional matrix adjust., Identities:71/287(25%), Positives:115/287(40%), Gaps:31/287(10%) Query 726 TIKVFTTVDNTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 +I V T DN N V TYG+Q G + DVT P G+ V+ + D Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQK--VIKAID 1545 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSI--KWADNNCYLSSVLLAL 842 + +Y D + SA +H +KF V I K DNNC+++++ LAL Sbjct 1546 I---DWQAHYGFRDAAAF----SASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 843 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 902 Q+L+ ++ P ++ + F ++ S GE GD E M H L Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 903 AKRVL--NVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKT-GVSIPCVCGRDATQYLVQQ 959 + ++ C C + VE ++G + L G CV G + Q Sbjct 1657 CEIIVTHTTACDKCAK-------VEK--FVGPVVAAPLAIHGTDETCVHGVSVNVKVTQI 1707 Query 960 ESSFVMMS--APPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETL 1004 + + + S P L+ ++C Y+G+ + GHYT+ + L Sbjct 1708 KGTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 Range 4: 1075 to 1266 Score:45.1 bits(105), Expect:0.007, Method:Compositional matrix adjust., Identities:53/205(26%), Positives:85/205(41%), Gaps:15/205(7%) Query 815 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 874 +K + G +K DNNC++++ LQ + FN EA+ + + GD +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 875 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLS 934 A + G GD + +L + +AK VL C CG+K L E ++ T Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVL---ERAVFKLTPL 1183 Query 935 YDNLKTGVSIPCVCGRDATQYLVQQESSFV--MMSAPPAEYKLQQGTFLCANEYTGNYQC 992 ++ GV C+ V+ FV ++S E + A YTG Q Sbjct 1184 KESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHA-VYTGTTQN 1242 Query 993 GHYTHITAKETLYRIDGAHLTKMSE 1017 GHY + E Y +DG + + + Sbjct 1243 GHYM-VDDIEHGYCVDGMGIKPLKK 1266 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 1946 to 2389 Score:140 bits(354), Expect:8e-32, Method:Compositional matrix adjust., Identities:131/499(26%), Positives:214/499(42%), Gaps:73/499(14%) Query 1422 CNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILG 1481 C+G + Y NSS V + + C S C CL+ D L + + +QV+ YK D + Sbjct 1946 CSGSVQAYSNSSFVKS-EVCGNSILCKACLASYDELADF---DHLQVSWD-YKSD-PLWN 1999 Query 1482 LAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF-------IISIVQMA 1534 + L+Y +F F + ++ YF S ++ N WL +F + +V Sbjct 2000 RVIQ--LSYFIFLAVFG----NNYVRCLLMYFVSQYL-NLWLSYFGYVKYSWFLHVVNFE 2052 Query 1535 PVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFY 1594 +S + + K HI C + +C C K R TR+ +VNG ++ Y Sbjct 2053 SISVEFVIIVVVFKAVLALK---HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVY 2109 Query 1595 VYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVA 1654 V+ANG CK HN+ C NCD++ TFI DE+ RDLS K+ + TD+S V V Sbjct 2110 VHANGTGKLCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVE 2169 Query 1655 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 1705 +G Y +D +K + L LD+ N GS +V Sbjct 2170 CTDGFYRFYVGEEFTAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGSSLASV------ 2223 Query 1706 SKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 1765 ++ VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2224 --------RNVCVYFSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2273 Query 1766 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVT 1825 + K L E K LD STF A +H + +T Sbjct 2274 SECKNL-----EECYKLCNLDVTFSTFEMAINN------------------AHRFGILIT 2310 Query 1826 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQ 1883 S NNF + K ++ D+G C+ +A+ +NA+V S++W +D+ +LS Sbjct 2311 DRSFNNFWPSKIKPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSST 2370 Query 1884 LRKQIRSAAKKNNIPFRLT 1902 +K + + + F LT Sbjct 2371 AQKVLVKTFVEEGVNFSLT 2389 Range 2: 1358 to 1474 Score:59.3 bits(142), Expect:4e-07, Method:Compositional matrix adjust., Identities:42/117(36%), Positives:58/117(49%), Gaps:1/117(0%) Query 214 PMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK 273 P V+VNAAN L+H GGVA A++ T G + K S +Y+K + + G + L Sbjct 1358 PDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLS 1417 Query 274 CLHVVGPNLNAGEDIQLLKAAYENFNSQD-ILLAPLLSAGIFGAKPLQSLQVCVQTV 329 L+ VGP L Y+ D +L PL+S GIF K SLQ ++TV Sbjct 1418 VLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTV 1474 Range 3: 1499 to 1762 Score:50.4 bits(119), Expect:2e-04, Method:Compositional matrix adjust., Identities:73/287(25%), Positives:113/287(39%), Gaps:31/287(10%) Query 726 TIKVFTTVDNTNLHTQLVDMSMTYGQQF-GPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 784 TI + T D N V + TYG+Q G + DVT P V+ G+ Sbjct 1499 TIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVV-----K 1553 Query 785 TLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSI--KWADNNCYLSSVLLAL 842 L + YY + + SA +H ++F V I K DNNC+++++ LAL Sbjct 1554 ALDVDWNAYYGFPNAAAF----SASSH-DAYEFDVVTHNNFIVHKQTDNNCWVNAICLAL 1608 Query 843 QQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLES 902 Q+L+ + P ++ + A F ++ S T G+ GD T+ L+ + +S Sbjct 1609 QRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDS 1668 Query 903 AKRVLN-VVCKHCGQKTTTLTG--VEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 959 A V + C C K T TG V A + L G CV G + Sbjct 1669 AVTVTHTTACDKCA-KVETFTGPVVAAPL---------LVCGTDEICVHGVHVNVKVTSI 1718 Query 960 ESSFVMMS--APPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETL 1004 + + S P + ++C YTG GHYT+ + L Sbjct 1719 RGTVAITSLIGPVVGDVIDATGYIC---YTGLNSRGHYTYYDNRNGL 1762 >RecName: Full=Uncharacterized protein TM_0508 [Thermotoga maritima MSB8] Sequence ID: Q9WYX8.1 Length: 599 Range 1: 435 to 566 Score:72.8 bits(177), Expect:2e-11, Method:Compositional matrix adjust., Identities:50/136(37%), Positives:72/136(52%), Gaps:13/136(9%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI +E A IVNAAN +LKHGGGVAGA+ +A +Q+ESD ++ G + G + Sbjct 435 DITREEVDA----IVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGRVPTGEAV 490 Query 264 LLSGHNL-AKKCLHVVGPNLNA---GEDIQLLKAAYEN-FNSQDILLA----PLLSAGIF 314 + S L AK +H VGP GED L KA Y + ++ L P +S GIF Sbjct 491 VTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMPAISTGIF 550 Query 315 GAKPLQSLQVCVQTVR 330 G +++ + + +R Sbjct 551 GFPKERAVGIFSKAIR 566 >RecName: Full=Uncharacterized protein PAE1111 [Pyrobaculum aerophilum str. IM2] Sequence ID: Q8ZXT3.1 Length: 182 Range 1: 25 to 129 Score:68.2 bits(165), Expect:2e-11, Method:Composition-based stats., Identities:42/106(40%), Positives:63/106(59%), Gaps:8/106(7%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN +L+HGGGVAGA+ + +Q+ES ++++ +GP+ VG + S L AK + Sbjct 25 IVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPVPVGDVAVTSAGRLKAKYVI 84 Query 276 HVVGPNLNAGEDIQLLKAAYEN--FNSQDILLA----PLLSAGIFG 315 H VGP E I+ L A +N ++++ L P +S GIFG Sbjct 85 HAVGPRCGV-EPIEKLAEAVKNALLKAEELGLVSIALPAISTGIFG 129 >RecName: Full=Uncharacterized protein SSO2899 [Saccharolobus solfataricus P2] Sequence ID: Q97UU4.1 Length: 177 Range 1: 25 to 129 Score:67.4 bits(163), Expect:3e-11, Method:Composition-based stats., Identities:45/106(42%), Positives:61/106(57%), Gaps:8/106(7%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN +L+HGGGVA A+ + +QKESD+Y+K GP+ VG + S L AK + Sbjct 25 IVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKAKYVI 84 Query 276 HVVGPNLN-AGEDIQLLKAAYENFNSQDIL-----LAPLLSAGIFG 315 H VGP GED +L A +++ D L P +S GI+G Sbjct 85 HAVGPRYGIEGED-KLESAIFKSLLKADELSLSSIAMPAISTGIYG 129 >RecName: Full=Uncharacterized protein Saci_1252 [Sulfolobus acidocaldarius DSM 639] Sequence ID: Q4J9D2.1 Length: 181 Range 1: 28 to 132 Score:67.4 bits(163), Expect:4e-11, Method:Composition-based stats., Identities:40/105(38%), Positives:58/105(55%), Gaps:6/105(5%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN +L HGGGVA A+ ++ +Q+ESD+Y++ NGP+ VG + + L A+ + Sbjct 28 IVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPVPVGEVAVTTAGKLKARYVI 87 Query 276 HVVGPNLNAGEDIQLLKAAYENFNSQDIL-----LAPLLSAGIFG 315 H VGP D +L A + D L P +S GI+G Sbjct 88 HAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAISTGIYG 132 >RecName: Full=Uncharacterized protein STK_23830 [Sulfurisphaera tokodaii str. 7] Sequence ID: Q96XY5.1 Length: 182 Range 1: 18 to 122 Score:61.2 bits(147), Expect:4e-09, Method:Composition-based stats., Identities:41/106(39%), Positives:61/106(57%), Gaps:8/106(7%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN +L+HGGGVA A+ + +QKES +Y++ GP+ GG + S L AK + Sbjct 18 IVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPTGGVAVTSAGKLKAKYVI 77 Query 276 HVVGPNLNAGEDIQLLKAAYENF--NSQDILLA----PLLSAGIFG 315 H VGP E + L+ A N ++++ L+ P +S GI+G Sbjct 78 HAVGPRYGI-EGEEKLEEAIRNALRKAEELKLSSIALPAISTGIYG 122 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9 [Berne virus] Sequence ID: P0C6F3.1 Length: 4569 Range 1: 1641 to 1819 Score:65.1 bits(157), Expect:7e-09, Method:Compositional matrix adjust., Identities:51/182(28%), Positives:85/182(46%), Gaps:13/182(7%) Query 144 LEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQF----TGYLKLTDNVA 199 L+ G+ E V V+ + +++ + E+ E + P E +F T + + D+ Sbjct 1641 LDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQTNVVLVQDDFK 1700 Query 200 IKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 259 + +K Q + +VN AN LKHGGG+A ++ +Q S++YI N + V Sbjct 1701 -SVFEFLKSEQGVD--YVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPV 1757 Query 260 GGSCLLSGHNLAKKC--LHVVGPNLNAGEDIQLLKAAYENF----NSQDILLAPLLSAGI 313 + G L KK +H VGP ++ G+ Q L A+ + Q +L +LS GI Sbjct 1758 TKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTSMLSTGI 1817 Query 314 FG 315 FG Sbjct 1818 FG 1819 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 1641 to 1819 Score:65.1 bits(157), Expect:8e-09, Method:Compositional matrix adjust., Identities:51/182(28%), Positives:85/182(46%), Gaps:13/182(7%) Query 144 LEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQF----TGYLKLTDNVA 199 L+ G+ E V V+ + +++ + E+ E + P E +F T + + D+ Sbjct 1641 LDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQTNVVLVQDDFK 1700 Query 200 IKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 259 + +K Q + +VN AN LKHGGG+A ++ +Q S++YI N + V Sbjct 1701 -SVFEFLKSEQGVD--YVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPV 1757 Query 260 GGSCLLSGHNLAKKC--LHVVGPNLNAGEDIQLLKAAYENF----NSQDILLAPLLSAGI 313 + G L KK +H VGP ++ G+ Q L A+ + Q +L +LS GI Sbjct 1758 TKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTSMLSTGI 1817 Query 314 FG 315 FG Sbjct 1818 FG 1819 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Cronobacter sakazakii ATCC BAA-894] Sequence ID: A7MG20.1 Length: 180 Range 1: 19 to 174 Score:59.3 bits(142), Expect:2e-08, Method:Composition-based stats., Identities:49/156(31%), Positives:71/156(45%), Gaps:21/156(13%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKC- 274 VIVNAAN L GGGV GA+++A A+ + G G + + +LA K Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQQGECQPGHAVITEAGDLAAKAV 78 Query 275 LHVVGPNLNAGED--IQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP G+D QLL AY N N + + P +S GI+G + Q+ Sbjct 79 VHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSVAFPAISTGIYGYPKAAAAQIAF 138 Query 327 QTVR---------TQVYIAVNDKA---LYEQVVMDY 350 +TV QVY D+ LY++++ Y Sbjct 139 ETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQY 174 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Agona str. SL483] Sequence ID: B5F961.1 Length: 179 Range 1: 20 to 168 Score:58.5 bits(140), Expect:3e-08, Method:Composition-based stats., Identities:52/157(33%), Positives:72/157(45%), Gaps:21/157(13%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A A+ + G G + + L AK + Sbjct 20 IVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVI 79 Query 276 HVVGPNLNAGE--DIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSLQ 323 H VGP GE + +LL+AAY N +LLA P +S G++G Q+ + Sbjct 80 HTVGPVWRGGEYQEAELLEAAYRNC----LLLAEANHFRSIAFPAISTGVYGYPRAQAAE 135 Query 324 VCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 V V+TV + AL EQV D R+ A Sbjct 136 VAVRTVSD----FITRYALPEQVYFVCYDEETARLYA 168 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Citrobacter koseri ATCC BAA-895] Sequence ID: A8AI35.1 Length: 177 Range 1: 19 to 171 Score:58.2 bits(139), Expect:5e-08, Method:Composition-based stats., Identities:50/155(32%), Positives:75/155(48%), Gaps:25/155(16%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A + + + G G + + L+G+ AK Sbjct 19 VIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQQGECPAGHAVITLAGNLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYENFNSQDILLA--------PLLSAGIFGAKPLQSLQV 324 +H VGP G+ + QLL+ AY FNS ++LA P +S G +G + ++ Sbjct 79 IHTVGPVWRGGDHNESQLLEDAY--FNSLQLVLANGYRSVAFPAISTGAYGYPRPAAAEI 136 Query 325 CVQTVR---------TQVYIAVNDKA---LYEQVV 347 V TV QVY D+ LYE+++ Sbjct 137 AVNTVADFLARHALPEQVYFVCYDEETARLYERLL 171 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli K-12] Sequence ID: P0A8D6.1 Length: 177 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli CFT073] Sequence ID: P0A8D7.1 Length: 177 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia coli O157:H7] Sequence ID: P0A8D8.1 Length: 177 Range 1: 19 to 171 Score:57.8 bits(138), Expect:5e-08, Method:Composition-based stats., Identities:50/153(33%), Positives:73/153(47%), Gaps:21/153(13%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A A+ + G G + + L+G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + QLL+ AY N NS + P +S G++G + ++ V Sbjct 79 VHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAV 138 Query 327 QTVR---------TQVYIAVNDKA---LYEQVV 347 +TV QVY D+ LYE+++ Sbjct 139 KTVSEFITRHALPEQVYFVCYDEENAHLYERLL 171 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 1595 to 1773 Score:62.0 bits(149), Expect:6e-08, Method:Compositional matrix adjust., Identities:51/184(28%), Positives:85/184(46%), Gaps:17/184(9%) Query 144 LEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGY------LKLTDN 197 L+ G+S E V V+ + ++ D +T ++ + E P NQ+ + + L + Sbjct 1595 LDVGSSLEQVYVDYDVSKNVWDLSTH---LQDDSSDDLELPFNQYYEFKVGRASVVLVQD 1651 Query 198 VAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPL 257 D +K Q + +VN AN LKHGGG+A ++ + S++YIK L Sbjct 1652 DFKSVYDFLKSEQGVD--YVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKL 1709 Query 258 TVGGSCLLSGHNLAK--KCLHVVGPNLNAGEDIQLLKAA----YENFNSQDILLAPLLSA 311 V + G L K + +HVVGP + + L+A+ ++N +L +LS Sbjct 1710 GVTCAIRSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLST 1769 Query 312 GIFG 315 GIFG Sbjct 1770 GIFG 1773 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9 [Breda virus serotype 1] Sequence ID: P0C6F4.1 Length: 4445 Range 1: 1595 to 1773 Score:62.0 bits(149), Expect:7e-08, Method:Compositional matrix adjust., Identities:51/184(28%), Positives:85/184(46%), Gaps:17/184(9%) Query 144 LEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGY------LKLTDN 197 L+ G+S E V V+ + ++ D +T ++ + E P NQ+ + + L + Sbjct 1595 LDVGSSLEQVYVDYDVSKNVWDLSTH---LQDDSSDDLELPFNQYYEFKVGRASVVLVQD 1651 Query 198 VAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPL 257 D +K Q + +VN AN LKHGGG+A ++ + S++YIK L Sbjct 1652 DFKSVYDFLKSEQGVD--YVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKL 1709 Query 258 TVGGSCLLSGHNLAK--KCLHVVGPNLNAGEDIQLLKAA----YENFNSQDILLAPLLSA 311 V + G L K + +HVVGP + + L+A+ ++N +L +LS Sbjct 1710 GVTCAIRSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLST 1769 Query 312 GIFG 315 GIFG Sbjct 1770 GIFG 1773 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Cronobacter turicensis z3032] Sequence ID: C9Y0V8.1 Length: 176 Range 1: 19 to 174 Score:56.6 bits(135), Expect:1e-07, Method:Composition-based stats., Identities:48/156(31%), Positives:70/156(44%), Gaps:21/156(13%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKC- 274 VIVNAAN L GGGV GA+++A ++ + G G + + +LA K Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQQGECQPGHAVITEAGDLAAKAV 78 Query 275 LHVVGPNLNAGED--IQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP G D QLL AY N N + + P +S GI+G + Q+ Sbjct 79 IHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSVAFPAISTGIYGYPKAAAAQIAF 138 Query 327 QTVR---------TQVYIAVNDKA---LYEQVVMDY 350 +TV QVY D+ LY++++ Y Sbjct 139 ETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQY 174 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Sequence ID: P67341.1 Length: 179 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Typhi] Sequence ID: P67342.1 Length: 179 Range 1: 20 to 168 Score:56.6 bits(135), Expect:2e-07, Method:Composition-based stats., Identities:51/157(32%), Positives:71/157(45%), Gaps:21/157(13%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A A+ + G G + + L AK + Sbjct 20 IVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVI 79 Query 276 HVVGPNLNAGE--DIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSLQ 323 H VGP GE + +LL+ AY N +LLA P +S G++G Q+ + Sbjct 80 HTVGPVWRGGEHQEAELLEEAYRNC----LLLAEANHFRSIAFPAISTGVYGYPRAQAAE 135 Query 324 VCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 V V+TV + AL EQV D R+ A Sbjct 136 VAVRTVSD----FITRYALPEQVYFVCYDEETARLYA 168 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Newport str. SL254] Sequence ID: B4T2X8.1 Length: 179 Range 1: 20 to 168 Score:55.8 bits(133), Expect:3e-07, Method:Composition-based stats., Identities:50/157(32%), Positives:71/157(45%), Gaps:21/157(13%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A A+ + G G + + L AK + Sbjct 20 IVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVI 79 Query 276 HVVGPNLNAGE--DIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSLQ 323 H VGP GE + +LL+ AY N +LLA P +S G++G Q+ + Sbjct 80 HTVGPVWRGGEHQEAELLEEAYRNC----LLLAEANHFRSIAFPAISTGVYGYPRAQAAE 135 Query 324 VCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 + V+TV + AL EQV D R+ A Sbjct 136 IAVRTVSD----FITRYALPEQVYFVCYDEETARLYA 168 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Sequence ID: B5RBF3.1 Length: 179 Range 1: 20 to 168 Score:54.3 bits(129), Expect:9e-07, Method:Composition-based stats., Identities:50/157(32%), Positives:71/157(45%), Gaps:21/157(13%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A A+ + G G + + L AK + Sbjct 20 IVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVI 79 Query 276 HVVGPNLNAGE--DIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSLQ 323 H VGP GE + +LL+ AY + +LLA P +S G++G Q+ + Sbjct 80 HTVGPVWRGGEHQEAELLEEAYRSC----LLLAEANHFRSIAFPAISTGVYGYPRAQAAE 135 Query 324 VCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEA 360 V V+TV + AL EQV D R+ A Sbjct 136 VAVRTVSD----FITRYALPEQVYFVCYDEETARLYA 168 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Klebsiella pneumoniae 342] Sequence ID: B5XXK9.1 Length: 175 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Klebsiella variicola At-22] Sequence ID: D3RKJ0.1 Length: 175 Range 1: 19 to 141 Score:53.9 bits(128), Expect:1e-06, Method:Composition-based stats., Identities:38/123(31%), Positives:63/123(51%), Gaps:9/123(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A A+ ++ G G + + ++G A Sbjct 19 VIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP + G+ + Q L AY+N N+ + P +S G++G ++ ++ V Sbjct 79 IHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAV 138 Query 327 QTV 329 +TV Sbjct 139 RTV 141 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP14; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 8; Short=ARTD8; AltName: Full=B aggressive lymphoma protein 2; AltName: Full=Poly [ADP-ribose] polymerase 14; Short=PARP-14 [Homo sapiens] Sequence ID: Q460N5.3 Length: 1801 Range 1: 818 to 937 Score:56.6 bits(135), Expect:2e-06, Method:Compositional matrix adjust., Identities:40/125(32%), Positives:60/125(48%), Gaps:16/125(12%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-KKC 274 V+VNA+N LKH GG+A AL+KA +Q + D +K G L G + + L Sbjct 818 VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHV 877 Query 275 LHVVGPNLNAGE----------DIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQV 324 +H VGP + E +QL E + + I + P +S+G+FG L Sbjct 878 IHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAI-PAISSGVFGF----PLGR 932 Query 325 CVQTV 329 CV+T+ Sbjct 933 CVETI 937 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP9; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 9; Short=ARTD9; AltName: Full=B aggressive lymphoma protein homolog; AltName: Full=Poly [ADP-ribose] polymerase 9; Short=PARP-9 [Mus musculus] Sequence ID: Q8CAS9.2 Length: 866 Range 1: 137 to 271 Score:56.6 bits(135), Expect:2e-06, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:65/139(46%), Gaps:16/139(11%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 +VNAAN +L HG G+AG+L K +Q+ES I G ++VGG + L + Sbjct 137 VVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITGAGRLPCHLII 196 Query 276 HVVGPNL---NAGEDIQLLKAAYENF----NSQDILLA----PLLSAGIFGAKPLQSLQV 324 H VGP N+ I+LLK A N D+ + P LS+GIF L + Sbjct 197 HAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIFQF----PLDL 252 Query 325 CVQTVRTQVYIAVNDKALY 343 C + + + DK ++ Sbjct 253 CTSIILETIRLYFQDKQMF 271 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Shigella flexneri 5 str. 8401] Sequence ID: Q0T5Z6.1 Length: 177 Range 1: 19 to 154 Score:52.4 bits(124), Expect:4e-06, Method:Compositional matrix adjust., Identities:47/140(34%), Positives:67/140(47%), Gaps:13/140(9%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A A+ + G G + + L+G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + QLL+ AY N NS + P +S G++ + ++ V Sbjct 79 VHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYSYPRAAAAEIAV 138 Query 327 QTVRTQVYIAVNDKALYEQV 346 +TV + AL EQV Sbjct 139 KTVSE----FITRHALPEQV 154 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Enterobacter sp. 638] Sequence ID: A4W960.1 Length: 180 Range 1: 19 to 141 Score:52.4 bits(124), Expect:4e-06, Method:Composition-based stats., Identities:39/123(32%), Positives:59/123(47%), Gaps:9/123(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A + + + G G + + ++G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECAPGHAVITIAGDLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + + L+ AY N N L P +S G++G + ++ V Sbjct 79 IHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTLAFPAISTGVYGYPKAAAAEIAV 138 Query 327 QTV 329 TV Sbjct 139 DTV 141 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Escherichia fergusonii ATCC 35469] Sequence ID: B7LT90.2 Length: 177 Range 1: 19 to 141 Score:52.4 bits(124), Expect:5e-06, Method:Compositional matrix adjust., Identities:40/123(33%), Positives:59/123(47%), Gaps:9/123(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 VIVNAAN L GGGV GA+++A + + + G G + + NL A+ Sbjct 19 VIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNLPARAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + QLL AY N N + P +S G++G + ++ V Sbjct 79 IHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAAAEIAV 138 Query 327 QTV 329 +TV Sbjct 139 KTV 141 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1342 to 1475 Score:55.5 bits(132), Expect:5e-06, Method:Compositional matrix adjust., Identities:52/145(36%), Positives:65/145(44%), Gaps:26/145(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A VI+NAAN + GGGV GAL K ES D P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKF-----PESFDL----QPIEVGKARLVKG--A 1390 Query 271 AKKCLHVVGPNLNAGEDIQ---LLKAAYE------NFNSQDILLAPLLSAGIFGA----- 316 AK +H VGPN N +I+ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRL 1450 Query 317 -KPLQSLQVCVQTVRTQVYIAVNDK 340 + L L + T V I DK Sbjct 1451 TQSLNHLLTALDTTDADVAIYCRDK 1475 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Citrobacter rodentium ICC168] Sequence ID: D2TT52.2 Length: 177 Range 1: 20 to 141 Score:52.0 bits(123), Expect:6e-06, Method:Composition-based stats., Identities:40/124(32%), Positives:60/124(48%), Gaps:13/124(10%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A + + + G G + + + L AK + Sbjct 20 IVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQQGECPPGHAVITAAGRLPAKAVI 79 Query 276 HVVGPNLNAGE--DIQLLKAAYENFNSQDILLA--------PLLSAGIFGAKPLQSLQVC 325 H VGP GE + QLL AY NS ++ LA P +S G++G + ++ Sbjct 80 HTVGPIWRGGEHNEAQLLHDAY--LNSLNLALANGYQSIAFPAISTGVYGYPRAAAAEIA 137 Query 326 VQTV 329 V T+ Sbjct 138 VNTI 141 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Shigella dysenteriae Sd197] Sequence ID: Q32E73.1 Length: 177 Range 1: 19 to 154 Score:51.6 bits(122), Expect:7e-06, Method:Compositional matrix adjust., Identities:46/140(33%), Positives:66/140(47%), Gaps:13/140(9%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVN N L GGGV GA+++A A+ + G G + + L+G AK Sbjct 19 VIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + QLL+ AY N NS + P +S G++G + ++ V Sbjct 79 VHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAV 138 Query 327 QTVRTQVYIAVNDKALYEQV 346 +TV + AL EQV Sbjct 139 KTVSE----FITRHALPEQV 154 >RecName: Full=O-acetyl-ADP-ribose deacetylase; AltName: Full=Regulator of RNase III activity [Enterobacter cloacae subsp. cloacae ATCC 13047] Sequence ID: D5CE05.1 Length: 180 Range 1: 19 to 141 Score:51.6 bits(122), Expect:7e-06, Method:Composition-based stats., Identities:38/123(31%), Positives:59/123(47%), Gaps:9/123(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCL-LSGHNLAKKC 274 VIVNAAN L GGGV GA+++A + + + G G + + L+G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECPPGHAVITLAGDLPAKAV 78 Query 275 LHVVGPNLNAGE--DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP + G+ + +L+ AY N N + P +S G++G + + V Sbjct 79 IHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTMAFPAISTGVYGYPKAAAATIAV 138 Query 327 QTV 329 TV Sbjct 139 DTV 141 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1342 to 1475 Score:54.7 bits(130), Expect:9e-06, Method:Compositional matrix adjust., Identities:51/145(35%), Positives:65/145(44%), Gaps:26/145(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A VI+NAAN + GGGV GAL K ES D P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKF-----PESFDL----QPIEVGKARLVKG--A 1390 Query 271 AKKCLHVVGPNLNAGEDIQ---LLKAAYE------NFNSQDILLAPLLSAGIFGA----- 316 AK +H VGPN N +++ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRL 1450 Query 317 -KPLQSLQVCVQTVRTQVYIAVNDK 340 + L L + T V I DK Sbjct 1451 TQSLNHLLTALDTTDADVAIYCRDK 1475 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1342 to 1475 Score:54.7 bits(130), Expect:9e-06, Method:Compositional matrix adjust., Identities:51/145(35%), Positives:65/145(44%), Gaps:26/145(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A VI+NAAN + GGGV GAL K ES D P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKF-----PESFDL----QPIEVGKARLVKG--A 1390 Query 271 AKKCLHVVGPNLNAGEDIQ---LLKAAYE------NFNSQDILLAPLLSAGIFGA----- 316 AK +H VGPN N +++ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRL 1450 Query 317 -KPLQSLQVCVQTVRTQVYIAVNDK 340 + L L + T V I DK Sbjct 1451 TQSLNHLLTALDTTDADVAIYCRDK 1475 >RecName: Full=Uncharacterized protein FN1951 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Sequence ID: Q8RHQ2.1 Length: 175 Range 1: 22 to 124 Score:50.8 bits(120), Expect:2e-05, Method:Composition-based stats., Identities:38/107(36%), Positives:55/107(51%), Gaps:13/107(12%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK-CL 275 IVNAAN L+ GGGV GA+ KA + +E + G G + + G+NL K + Sbjct 22 IVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGCNTGEAVITKGYNLPNKYII 77 Query 276 HVVGPNLNAGEDIQ---LLKAAYENF---NSQDI--LLAPLLSAGIF 314 H VGP + GE+ + L A YE+ N + I + P +S GI+ Sbjct 78 HTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPSISTGIY 124 >RecName: Full=Macro domain-containing protein CT2219 [Chlorobaculum tepidum TLS] Sequence ID: Q8KAE4.1 Length: 172 Range 1: 1 to 140 Score:49.3 bits(116), Expect:4e-05, Method:Composition-based stats., Identities:46/146(32%), Positives:69/146(47%), Gaps:15/146(10%) Query 194 LTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL 253 + DNV I + + S IVNAAN L GGGV GA+++A + + + L Sbjct 1 MPDNVLIHAIK--ADITSLTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACRE---L 55 Query 254 NGPLTVGGSCLLSGHNL-AKKCLHVVGPNLNAGE--DIQLLKAAYENFNSQDI------L 304 G LT G + + G+ L A +H VGP + G + +LL + Y N I + Sbjct 56 GGCLT-GEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTI 114 Query 305 LAPLLSAGIFGAKPLQSLQVCVQTVR 330 P +S GI+G Q+ + + TVR Sbjct 115 AFPSISTGIYGYPVEQAAAIAITTVR 140 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP9; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 9; Short=ARTD9; AltName: Full=B aggressive lymphoma protein; AltName: Full=Poly [ADP-ribose] polymerase 9; Short=PARP-9 [Homo sapiens] Sequence ID: Q8IXQ6.2 Length: 854 Range 1: 135 to 289 Score:52.0 bits(123), Expect:5e-05, Method:Compositional matrix adjust., Identities:47/160(29%), Positives:76/160(47%), Gaps:19/160(11%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-KKCL 275 +VNAAN L HGGG+A AL KA +Q+ES ++ G ++ G + L K+ + Sbjct 135 VVNAANEDLLHGGGLALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQII 194 Query 276 HVVGPNL----NAGEDIQLLKA--------AYENFNSQDILLAPLLSAGIFGAKPLQSLQ 323 H VGP G +L +A Y+N + + + + P LS+GIF L Sbjct 195 HAVGPRWMEWDKQGCTGKLQRAIVSILNYVIYKNTHIKTVAI-PALSSGIFQF----PLN 249 Query 324 VCVQTVRTQVYIAVNDKALYEQVVMDYL-DNLKPRVEAPK 362 +C +T+ + +++ K + + +L N P V A K Sbjct 250 LCTKTIVETIRVSLQGKPMMSNLKEIHLVSNEDPTVAAFK 289 >RecName: Full=Macro domain-containing protein VPA0103 [Vibrio parahaemolyticus RIMD 2210633] Sequence ID: Q87JZ5.1 Length: 170 Range 1: 13 to 149 Score:48.5 bits(114), Expect:7e-05, Method:Composition-based stats., Identities:42/141(30%), Positives:71/141(50%), Gaps:17/141(12%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKES---DDYIKLNGPLTVGGSCLLSG 267 +A+ IVNAAN + GGGV GA+++A A+ DD + P G + + Sbjct 13 TAHVDAIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVDGIRCPF--GDARITEA 70 Query 268 HNL-AKKCLHVVGPNLNAGEDIQ-LLKAAYENFNSQDILLA--------PLLSAGIFGAK 317 NL A+ +H VGP + D + +L++AY+ S D+ LA P +S G++G Sbjct 71 GNLNARYVIHAVGPIYDKFADPKTVLESAYQ--RSLDLALANHCQSVALPAISCGVYGYP 128 Query 318 PLQSLQVCVQTVRTQVYIAVN 338 P ++ +V + + Y A++ Sbjct 129 PQEAAEVAMAVCQRPEYAALD 149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1342 to 1475 Score:51.6 bits(122), Expect:8e-05, Method:Compositional matrix adjust., Identities:49/145(34%), Positives:65/145(44%), Gaps:26/145(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A VIVNAAN + G GV GAL + ES D P+ VG + L+ G+ Sbjct 1342 TATEGVIVNAANSKGQPGSGVCGALYRK-----YPESFDL----QPIEVGKARLVKGN-- 1390 Query 271 AKKCLHVVGPNLNAGEDIQ---LLKAAYE------NFNSQDILLAPLLSAGIFGA----- 316 +K +H VGPN N +++ L AYE N N+ + PLLS GIF Sbjct 1391 SKHLIHAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSVAIPLLSTGIFAGNKDRL 1450 Query 317 -KPLQSLQVCVQTVRTQVYIAVNDK 340 + L L + T V I DK Sbjct 1451 MQSLNHLLTALDTTDADVAIYCRDK 1475 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP14; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 8; Short=ARTD8; AltName: Full=Collaborator of STAT6; Short=CoaSt6; AltName: Full=Poly [ADP-ribose] polymerase 14; Short=PARP-14 [Mus musculus] Sequence ID: Q2EMV9.3 Length: 1817 Range 1: 817 to 948 Score:51.2 bits(121), Expect:1e-04, Method:Compositional matrix adjust., Identities:44/137(32%), Positives:65/137(47%), Gaps:17/137(12%) Query 205 IVKEAQSANPM-VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 +++E S P+ V+VNAAN +LKH G+A AL+KA +Q E D +K G + G + Sbjct 817 VLEEDLSRFPVDVVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAV 876 Query 264 LLSGHNLA-KKCLHVVGPNLNAG---EDIQLLKAAY-------ENFNSQDILLAPLLSAG 312 + L +H VGP E + LLK E + I + P +SAG Sbjct 877 ISKAGKLPCHHVIHAVGPRWKGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAM-PAVSAG 935 Query 313 IFGAKPLQSLQVCVQTV 329 IF L++CV + Sbjct 936 IFDF----PLELCVANI 948 >RecName: Full=Macro domain-containing protein TTE0995 [Caldanaerobacter subterraneus subsp. tengcongensis MB4] Sequence ID: Q8RB30.1 Length: 175 Range 1: 20 to 141 Score:47.8 bits(112), Expect:2e-04, Method:Composition-based stats., Identities:42/124(34%), Positives:61/124(49%), Gaps:13/124(10%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA++KA A+ +E + G G + + NL AK + Sbjct 20 IVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVI 79 Query 276 HVVGP----------NLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVC 325 H VGP NL A I+ LK A E +N + I P +S G +G ++ ++ Sbjct 80 HAVGPIWKGGNHNEDNLLASAYIESLKLADE-YNVKTIAF-PSISTGAYGFPVERAARIA 137 Query 326 VQTV 329 ++ V Sbjct 138 LRVV 141 >RecName: Full=Macro domain-containing protein LA_4133 [Leptospira interrogans serovar Lai str. 56601] Sequence ID: Q8EYT0.1 Length: 175 Range 1: 20 to 141 Score:46.2 bits(108), Expect:5e-04, Method:Compositional matrix adjust., Identities:42/127(33%), Positives:64/127(50%), Gaps:19/127(14%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A + +E + G VG + + + L AK + Sbjct 20 IVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVITTAGRLNAKFII 79 Query 276 HVVGPNLNAG---EDIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSL 322 H VGP + G ED +LL AY+N +LLA P +S GI+ ++ Sbjct 80 HTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNISTGIYHFPKERAA 134 Query 323 QVCVQTV 329 ++ +Q+V Sbjct 135 KIAIQSV 141 >RecName: Full=Macro domain-containing protein RSc0334 [Ralstonia solanacearum GMI1000] Sequence ID: Q8Y2K1.1 Length: 171 Range 1: 23 to 141 Score:46.2 bits(108), Expect:5e-04, Method:Composition-based stats., Identities:41/123(33%), Positives:61/123(49%), Gaps:13/123(10%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A + + L+G T G + + G L A+ + Sbjct 23 IVNAANSALLGGGGVDGAIHRAAGPELLEACR---ALHGCRT-GQAKITPGFLLPARYII 78 Query 276 HVVGPNLNAG--EDIQLLKAAYEN----FNSQDI--LLAPLLSAGIFGAKPLQSLQVCVQ 327 H VGP G ++ LL A Y N D+ + P +S G++G P + + V+ Sbjct 79 HTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVR 138 Query 328 TVR 330 TVR Sbjct 139 TVR 141 >RecName: Full=Macro domain-containing protein LIC_13295 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Sequence ID: Q72M93.1 Length: 175 Range 1: 20 to 141 Score:46.2 bits(108), Expect:6e-04, Method:Compositional matrix adjust., Identities:42/127(33%), Positives:64/127(50%), Gaps:19/127(14%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A + +E + G VG + + + L AK + Sbjct 20 IVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVITTAGRLNAKFII 79 Query 276 HVVGPNLNAG---EDIQLLKAAYENFNSQDILLA----------PLLSAGIFGAKPLQSL 322 H VGP + G ED +LL AY+N +LLA P +S GI+ ++ Sbjct 80 HTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNISTGIYHFPKERAA 134 Query 323 QVCVQTV 329 ++ +Q+V Sbjct 135 KIAIQSV 141 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1342 to 1475 Score:48.9 bits(115), Expect:6e-04, Method:Compositional matrix adjust., Identities:48/145(33%), Positives:64/145(44%), Gaps:26/145(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A VIVNAAN + G GV GAL + ES D P+ VG + L+ G Sbjct 1342 TATEGVIVNAANSKGQPGSGVCGALYRK-----YPESFDL----QPIEVGKARLVKGS-- 1390 Query 271 AKKCLHVVGPNLNAGEDIQ---LLKAAYE------NFNSQDILLAPLLSAGIFGA----- 316 +K +H VGPN + +++ L AYE N N+ + PLLS GIF Sbjct 1391 SKHIIHAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSVAIPLLSTGIFAGNKDRL 1450 Query 317 -KPLQSLQVCVQTVRTQVYIAVNDK 340 + L L + T V I DK Sbjct 1451 MQSLNHLLTALDTTDADVAIYCRDK 1475 >RecName: Full=Macro domain-containing protein; AltName: Full=ORF549 [Acinetobacter sp. ED45-25] Sequence ID: Q93SX7.1 Length: 183 Range 1: 19 to 144 Score:45.8 bits(107), Expect:8e-04, Method:Compositional matrix adjust., Identities:38/126(30%), Positives:64/126(50%), Gaps:9/126(7%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVN+AN L GGG+ ++K M++E + G G + + + NL AK + Sbjct 19 IVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKGGCPTGQAEVTTAGNLPAKYLI 78 Query 276 HVVGPNLNAGE--DIQLLKAAYEN--FNSQDI----LLAPLLSAGIFGAKPLQSLQVCVQ 327 H VGP GE + QLL AY N F + +I + P +S G++G P ++ ++ + Sbjct 79 HAVGPRWLDGEHNEPQLLCDAYSNALFKANEIHALTVSFPCISTGVYGFPPQKAAEIAIG 138 Query 328 TVRTQV 333 T+ + + Sbjct 139 TILSML 144 >RecName: Full=O-acetyl-ADP-ribose deacetylase 1; AltName: Full=Regulator of RNase III activity 1 [Pantoea vagans C9-1] Sequence ID: E1SDF1.1 Length: 171 Range 1: 10 to 141 Score:45.4 bits(106), Expect:0.001, Method:Compositional matrix adjust., Identities:40/136(29%), Positives:64/136(47%), Gaps:13/136(9%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI K + A IVNAAN L GGGV GA+++A + E G VG + Sbjct 10 DITKVSAEA----IVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQGGCKVGDAV 65 Query 264 LLSGHNL-AKKCLHVVGPNLNAG--EDIQLLKAAYE------NFNSQDILLAPLLSAGIF 314 + NL A +H VGP + G ++ LLK AY+ +++ + P +S GI+ Sbjct 66 ITGAGNLPADYVIHTVGPRWSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSFPNISTGIY 125 Query 315 GAKPLQSLQVCVQTVR 330 G ++ + + ++ Sbjct 126 GFPKERAATIALDVIK 141 >RecName: Full=Macro domain-containing protein MM_0177 [Methanosarcina mazei Go1] Sequence ID: Q8Q0F9.1 Length: 187 Range 1: 19 to 154 Score:45.4 bits(106), Expect:0.001, Method:Compositional matrix adjust., Identities:49/145(34%), Positives:71/145(48%), Gaps:19/145(13%) Query 196 DNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNG 255 D + I DIVK A IVNAAN L GGGV GA+++A A+ +E LNG Sbjct 19 DRIRIFEGDIVKMRVDA----IVNAANNTLLGGGGVDGAIHRAAGPALLEECKT---LNG 71 Query 256 PLTVGGSCLLSGHNL-AKKCLHVVGPNLNAGE--DIQLLKAAY-------ENFNSQDILL 305 T G + + SG+ L AK +H VGP GE + +LL + Y ++ + I Sbjct 72 CPT-GEAKITSGYLLPAKYIIHTVGPVWQGGEKGEDELLASCYRKSLELARDYKIKTIAF 130 Query 306 APLLSAGIFGAKPLQSLQVCVQTVR 330 P +S G +G ++ + V V+ Sbjct 131 -PAISTGAYGFPSERAAGIAVSQVK 154 >RecName: Full=Macro domain-containing protein lp_3408 [Lactobacillus plantarum WCFS1] Sequence ID: Q88SK6.1 Length: 172 Range 1: 2 to 158 Score:43.1 bits(100), Expect:0.005, Method:Composition-based stats., Identities:53/165(32%), Positives:76/165(46%), Gaps:30/165(18%) Query 198 VAIKCV--DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNG 255 V IK + DI K A IVNAAN L GGGV GA+++A A+ L+G Sbjct 2 VEIKVIHGDITKMTVDA----IVNAANTSLLGGGGVDGAIHRAAGPALLAACR---PLHG 54 Query 256 PLTVGGSCLLSGHNL-AKKCLHVVGPNLNAGE--DIQLLKAAYENF------NSQDILLA 306 T G + + G L AK +H GP G+ ++QLL +Y N N + Sbjct 55 CAT-GEAKITPGFRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAF 113 Query 307 PLLSAGIFG-----AKP--LQSLQVCVQ----TVRTQVYIAVNDK 340 P +S G++ A P L++LQ Q TV+T + +D+ Sbjct 114 PSISTGVYHFPLSIAAPLALKTLQATAQTTAHTVQTITIVCFDDQ 158 >RecName: Full=Macro domain-containing protein SCO6450 [Streptomyces coelicolor A3(2)] Sequence ID: Q9ZBG3.1 Length: 169 Range 1: 10 to 143 Score:43.1 bits(100), Expect:0.006, Method:Composition-based stats., Identities:44/138(32%), Positives:67/138(48%), Gaps:14/138(10%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYI--KLNGPLTVGG 261 DI +++ A IVNAAN L GGGV GA+++ A+ E L L G Sbjct 10 DITRQSADA----IVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGKGLPTGR 65 Query 262 SCLLSGHNL-AKKCLHVVGPNLNAGEDIQ-LLKAAY-ENFNSQDILLA-----PLLSAGI 313 + + +L A+ +H VGP +A ED LL + Y E+ + D L A P +S G+ Sbjct 66 AVATTAGDLDARWVIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFPAISTGV 125 Query 314 FGAKPLQSLQVCVQTVRT 331 + + ++ V+TV T Sbjct 126 YRWPMDDAARIAVETVAT 143 >RecName: Full=ADP-ribose glycohydrolase AF_1521; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase AF_1521; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase AF_1521 [Archaeoglobus fulgidus DSM 4304] Sequence ID: O28751.2 Length: 192 Range 1: 29 to 173 Score:42.7 bits(99), Expect:0.009, Method:Compositional matrix adjust., Identities:44/147(30%), Positives:71/147(48%), Gaps:23/147(15%) Query 217 IVNAANIHLKHGGGVAGALNKATNG-----------AMQKE-SDDYIKLNGPLTVGGSCL 264 IVNAAN L+HGGGVA A+ KA G AM+++ DYI +G + V + Sbjct 29 IVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYID-HGEVVVTPAMN 87 Query 265 LSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENF-----NSQDI----LLAPLLSAGIFG 315 L + K H VGP + +L + Y+ F ++++ + P +SAGI+G Sbjct 88 LEERGI-KYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYG 146 Query 316 AKPLQSLQVCVQTVRTQVYIAVNDKAL 342 + ++ ++ V+ AV + AL Sbjct 147 CDLEKVVETFLEAVKNFKGSAVKEVAL 173 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1337 to 1496 Score:44.7 bits(104), Expect:0.009, Method:Compositional matrix adjust., Identities:53/176(30%), Positives:77/176(43%), Gaps:39/176(22%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI K A A IVNAAN + G GV GAL + A ++ P+ VG + Sbjct 1337 DISKSADQA----IVNAANSKGQPGSGVCGALYRKWPAAFDRQ---------PIAVGTAR 1383 Query 264 LLSGHNLAKKCLHVVGPNLNAGEDIQ---LLKAAYENF----NSQDI--LLAPLLSAGIF 314 L+ L +H VGPN + + + L AAY + N++ I + PLLS GI+ Sbjct 1384 LVKHEPL---IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLLSTGIY 1440 Query 315 GA---KPLQSLQ---VCVQTVRTQVYIAVNDK--------ALYEQVVMDYLDNLKP 356 + +QSL T V I DK A++ + ++ LD+ KP Sbjct 1441 SGGKDRVMQSLHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKESVEILDDDKP 1496 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1337 to 1451 Score:44.3 bits(103), Expect:0.015, Method:Compositional matrix adjust., Identities:45/134(34%), Positives:58/134(43%), Gaps:34/134(25%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI K +N VIVNAAN + G GV GAL + GA K+ P+ G + Sbjct 1337 DITK----SNDEVIVNAANNKGQPGSGVCGALYRKWPGAFDKQ---------PVATGKAH 1383 Query 264 LLSGHNLAKKCLHVVGPN---LNAGEDIQLLKAAY---------ENFNSQDILLAPLLSA 311 L+ + +H VGPN L+ E Q L Y E F I PLLS Sbjct 1384 LVKH---SPNVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSI---PLLST 1437 Query 312 GIFGA---KPLQSL 322 GI+ + +QSL Sbjct 1438 GIYAGGKDRVMQSL 1451 >RecName: Full=Uncharacterized protein PH1513 [Pyrococcus horikoshii OT3] Sequence ID: O59182.1 Length: 190 Range 1: 20 to 165 Score:42.0 bits(97), Expect:0.017, Method:Composition-based stats., Identities:46/150(31%), Positives:74/150(49%), Gaps:27/150(18%) Query 217 IVNAANIHLKHGGGVAGALNKATNG-----------AMQKE-SDDYIKLNGPLTVGGSCL 264 IVNAAN +L+HGGGVA A+ KA +G M+++ D+I+ +G + V Sbjct 20 IVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQLGKDWIE-HGEVVVTPPMK 78 Query 265 LSGHNLAKKCLHVVGP------NLNAGEDIQL-----LKAAYENFNSQDILLAPLLSAGI 313 L N K +H VGP + + E ++L LK A E + I P +SAGI Sbjct 79 LK-ENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADE-LGVKSIAF-PAISAGI 135 Query 314 FGAKPLQSLQVCVQTVRTQVYIAVNDKALY 343 +G + ++ + V+ + +A + K +Y Sbjct 136 YGCPLKEVVRTFKEVVKEFLKVANHVKEVY 165 >RecName: Full=Macro domain-containing protein LMOf2365_2748 [Listeria monocytogenes serotype 4b str. F2365] Sequence ID: Q71W03.1 Length: 176 Range 1: 17 to 140 Score:41.6 bits(96), Expect:0.020, Method:Compositional matrix adjust., Identities:40/124(32%), Positives:60/124(48%), Gaps:9/124(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 VIVNAAN L GGGV GA+++A + KE + I G G + + S +L A Sbjct 17 VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYI 76 Query 275 LHVVGPNLNAGEDIQLLKAAYENFNSQDI--------LLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + K A + + D+ + P +S G++G + +V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 327 QTVR 330 TVR Sbjct 137 YTVR 140 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain RN-UK86] Sequence ID: Q8BCR0.1 Length: 2116 Range 1: 812 to 999 Score:43.5 bits(101), Expect:0.022, Method:Compositional matrix adjust., Identities:49/196(25%), Positives:74/196(37%), Gaps:28/196(14%) Query 191 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 250 Y + V ++ DI+ V+VNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAAD---- 865 Query 251 IKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGEDIQLLKAAYENF---- 298 + P G + GH +H V P L GE LL+ AY + Sbjct 866 CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE--ALLERAYRSIVALA 923 Query 299 --NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQ------VYIAVNDKALYEQVVMDY 350 + PLL AG++G +SL+ + RT+ ++I D+A + Sbjct 924 AARRWACVACPLLGAGVYGWSAAESLRAALAATRTEPAERVSLHICHPDRATLTHASVLV 983 Query 351 LDNLKPRVEAPKQEEP 366 L R +P EP Sbjct 984 GAGLAARRVSPPPTEP 999 >RecName: Full=Macro domain-containing protein lmo2759 [Listeria monocytogenes EGD-e] Sequence ID: Q8Y3S3.1 Length: 176 Range 1: 17 to 140 Score:41.6 bits(96), Expect:0.022, Method:Compositional matrix adjust., Identities:40/124(32%), Positives:60/124(48%), Gaps:9/124(7%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 VIVNAAN L GGGV GA+++A + KE + I G G + + S +L A Sbjct 17 VIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKATYI 76 Query 275 LHVVGPNLNAGEDIQLLKAAYENFNSQDI--------LLAPLLSAGIFGAKPLQSLQVCV 326 +H VGP GE + K A + + D+ + P +S G++G + +V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 327 QTVR 330 TVR Sbjct 137 YTVR 140 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus vaccine strain RA27/3] Sequence ID: O40955.1 Length: 2116 Range 1: 812 to 1016 Score:43.1 bits(100), Expect:0.030, Method:Compositional matrix adjust., Identities:51/213(24%), Positives:80/213(37%), Gaps:32/213(15%) Query 191 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 250 Y + V ++ DI+ V+VNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAAD---- 865 Query 251 IKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGEDIQLLKAAYENFNSQD 302 + P G + GH +H V P L GE LL+ AY + + Sbjct 866 CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE--ALLERAYRSIVALA 923 Query 303 ILLA------PLLSAGIFGAKPLQSLQVCVQTVRTQ------VYIAVNDKALYEQVVMDY 350 PLL AG++G +SL+ + RT+ ++I D+A + Sbjct 924 AARRWARVACPLLGAGVYGWSAAESLRAALAATRTEPAERVSLHICHPDRATLTHASVLV 983 Query 351 LDNLKPRVEAPKQEEP----PNTEDSKTEEKSV 379 L R +P EP P + + ++S Sbjct 984 GAGLAARRVSPPPTEPLASCPAGDPGRPAQRSA 1016 >RecName: Full=Macro domain-containing protein lin2902 [Listeria innocua Clip11262] Sequence ID: Q926Y8.1 Length: 176 Range 1: 14 to 140 Score:40.8 bits(94), Expect:0.033, Method:Compositional matrix adjust., Identities:41/127(32%), Positives:61/127(48%), Gaps:9/127(7%) Query 213 NPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-A 271 N VIVNAAN L GGGV GA+++A + KE + I G G + + S +L A Sbjct 14 NVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKA 73 Query 272 KKCLHVVGPNLNAGEDIQLLKAAYENFNSQDI--------LLAPLLSAGIFGAKPLQSLQ 323 +H VGP GE + K A + + D+ + P +S G++G + + Sbjct 74 HFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAE 133 Query 324 VCVQTVR 330 V + TVR Sbjct 134 VALYTVR 140 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1345 to 1515 Score:43.1 bits(100), Expect:0.034, Method:Compositional matrix adjust., Identities:52/187(28%), Positives:78/187(41%), Gaps:35/187(18%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCL 275 VIVNAAN + G GV GAL K GA K P+ G + L+ + Sbjct 1345 VIVNAANNKGQPGAGVCGALYKKWPGAFDK---------APIATGTAHLVKH---TPNII 1392 Query 276 HVVGPNLNAGEDI---QLLKAAY---------ENFNSQDILLAPLLSAGIFGA---KPLQ 320 H VGPN + ++ Q L Y E +N I PLLS G++ + +Q Sbjct 1393 HAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSI---PLLSTGVYAGGKDRVMQ 1449 Query 321 SLQ---VCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTE-E 376 SL + T V I DK +E + D + + E + ++P + E + + Sbjct 1450 SLNHLFTAMDTTDADVTIYCLDKQ-WETRIKDAIARKESVEELVEDDKPVDIELVRVHPQ 1508 Query 377 KSVVQKP 383 S+V +P Sbjct 1509 SSLVGRP 1515 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Therien] Sequence ID: P13889.5 Length: 2116 Range 1: 812 to 1016 Score:42.7 bits(99), Expect:0.035, Method:Compositional matrix adjust., Identities:51/213(24%), Positives:79/213(37%), Gaps:32/213(15%) Query 191 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 250 Y + V ++ DI+ V+VNAAN L G GV GA+ A+ Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAAN---- 865 Query 251 IKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGEDIQLLKAAYENF---- 298 + P G + GH +H V P L GE LL+ AY + Sbjct 866 CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE--ALLERAYRSIVALA 923 Query 299 --NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQ------VYIAVNDKALYEQVVMDY 350 + PLL AG++G +SL+ + RT+ ++I D+A + Sbjct 924 AARRWACVACPLLGAGVYGWSAAESLRAALAATRTEPVERVSLHICHPDRATLTHASVLV 983 Query 351 LDNLKPRVEAPKQEEP----PNTEDSKTEEKSV 379 L R +P EP P + + ++S Sbjct 984 GAGLAARRVSPPPTEPLASCPAGDPGRPAQRSA 1016 >RecName: Full=Uncharacterized protein PYRAB06560 [Pyrococcus abyssi GE5] Sequence ID: Q9V0Y3.2 Length: 183 Range 1: 17 to 140 Score:40.8 bits(94), Expect:0.037, Method:Composition-based stats., Identities:44/129(34%), Positives:62/129(48%), Gaps:28/129(21%) Query 217 IVNAANIHLKHGGGVAGALNKATNG-----------AMQKE-SDDYIKLNGPLTVGGSCL 264 IVNAAN +L+HGGGVA A+ KA +G M+K+ D+I+ +G + V Sbjct 17 IVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWIE-HGEVVVTPPLN 75 Query 265 LSGHNLAKKCLHVVGPNLNAGED-----------IQLLKAAYENFNSQDILLAPLLSAGI 313 L+ N K +H VGP D + LK A E + I P +SAGI Sbjct 76 LA-KNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE-LGVRSIAF-PAISAGI 132 Query 314 FGAKPLQSL 322 +G PL+ + Sbjct 133 YGC-PLEEV 140 >RecName: Full=Macro domain-containing protein MA_1614 [Methanosarcina acetivorans C2A] Sequence ID: Q8TQD0.1 Length: 195 Range 1: 44 to 169 Score:40.4 bits(93), Expect:0.057, Method:Compositional matrix adjust., Identities:42/134(31%), Positives:66/134(49%), Gaps:19/134(14%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 IVNAAN L GGGV GA+++A + +E LNG T G + + G+ L AK + Sbjct 44 IVNAANNTLLGGGGVDGAIHRAAGPGLLEECRT---LNGCPT-GEAKITKGYLLPAKYVI 99 Query 276 HVVGP---NLNAGEDIQLLKAAY-------ENFNSQDILLAPLLSAGIFGAKPLQSLQVC 325 H VGP GED + L + Y ++ + I P +S G +G ++ ++ Sbjct 100 HTVGPIWQEGTKGED-EFLASCYRKSLELARKYDVKTIAF-PTISTGAYGFPSERAARIA 157 Query 326 VQTVRTQVYIAVND 339 V V+ ++ VN+ Sbjct 158 VSQVKE--FLKVNE 169 >RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName: Full=MACRO domain-containing protein 1; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD1; AltName: Full=Protein LRP16; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD1; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD1 [Rattus norvegicus] Sequence ID: Q8K4G6.2 Length: 258 Range 1: 101 to 221 Score:40.8 bits(94), Expect:0.079, Method:Compositional matrix adjust., Identities:39/127(31%), Positives:60/127(47%), Gaps:18/127(14%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 IVNAAN L GGGV G +++A + +D+ L T G + + G+ L AK Sbjct 101 AIVNAANNSLLGGGGVDGCIHRAAGSLL---TDECRTLQNCET-GKAKITCGYRLPAKHV 156 Query 275 LHVVGP---NLNAGEDIQLLKAAYENFNSQDILLA--------PLLSAGIFGAKPLQSLQ 323 +H VGP L++ Y +S D+LL P +S G+FG ++ + Sbjct 157 IHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHRLRSVAFPCISTGVFGYPNEEAAE 214 Query 324 VCVQTVR 330 V + T+R Sbjct 215 VVLATLR 221 >RecName: Full=Macro domain-containing protein PA3693 [Pseudomonas aeruginosa PAO1] Sequence ID: Q9HXU7.1 Length: 173 Range 1: 10 to 139 Score:39.7 bits(91), Expect:0.090, Method:Composition-based stats., Identities:41/139(29%), Positives:61/139(43%), Gaps:19/139(13%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI + A A IVNAAN L GGGV GA+++A + +L G + Sbjct 10 DITRLAVDA----IVNAANSSLLGGGGVDGAIHRAAGAELVAAC----RLLHGCKTGEAK 61 Query 264 LLSGHNL-AKKCLHVVGPNLNAGE--DIQLLKAAY-------ENFNSQDILLAPLLSAGI 313 + G L A +H VGP G+ + +LL + Y E + + P +S GI Sbjct 62 ITRGFRLPAAHVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAF-PAISCGI 120 Query 314 FGAKPLQSLQVCVQTVRTQ 332 +G Q+ + V+ V Q Sbjct 121 YGYPLEQAAAIAVEEVCRQ 139 >RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName: Full=MACRO domain-containing protein 1; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD1; AltName: Full=Protein LRP16; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD1; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD1 [Homo sapiens] Sequence ID: Q9BQ69.2 Length: 325 Range 1: 140 to 288 Score:40.4 bits(93), Expect:0.13, Method:Compositional matrix adjust., Identities:46/161(29%), Positives:75/161(46%), Gaps:24/161(14%) Query 182 EEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNG 241 EEP ++ +L + +++ DI K A IVNAAN L GGGV G +++A Sbjct 140 EEP--RYKKDKQLNEKISLLRSDITKLEVDA----IVNAANSSLLGGGGVDGCIHRAAGP 193 Query 242 AMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCLHVVGP---NLNAGEDIQLLKAAYEN 297 + +D+ L T G + + G+ L AK +H VGP + L++ Y Sbjct 194 LL---TDECRTLQSCKT-GKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCY-- 247 Query 298 FNSQDILLA--------PLLSAGIFGAKPLQSLQVCVQTVR 330 +S D+LL P +S G+FG + ++ + T+R Sbjct 248 LSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLR 288 >RecName: Full=Macro domain-containing protein XCC3184 [Xanthomonas campestris pv. campestris str. ATCC 33913] Sequence ID: Q8P5Z8.1 Length: 179 Range 1: 17 to 142 Score:39.3 bits(90), Expect:0.13, Method:Composition-based stats., Identities:36/126(29%), Positives:58/126(46%), Gaps:11/126(8%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQK--ESDDYIKLNGPLTVGGSCLLSGHNL-AK 272 VIVNAAN L GGGV GA+++A + + E+ ++ G + G +L A+ Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKAR 76 Query 273 KCLHVVGPNLNAG---EDIQLLKAAYENFNSQDILLA-----PLLSAGIFGAKPLQSLQV 324 H VGP G E QL +++ + ++ P +S GI+G Q+ ++ Sbjct 77 HIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARI 136 Query 325 CVQTVR 330 V R Sbjct 137 AVTETR 142 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1337 to 1451 Score:40.8 bits(94), Expect:0.17, Method:Compositional matrix adjust., Identities:43/134(32%), Positives:55/134(41%), Gaps:34/134(25%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 263 DI K A IVNAAN + G GV GAL K GA K P+ G + Sbjct 1337 DISKSTDEA----IVNAANNKGQPGAGVCGALYKKWPGAFDKV---------PIATGTAH 1383 Query 264 LLSGHNLAKKCLHVVGPNLNAGEDI---QLLKAAY---------ENFNSQDILLAPLLSA 311 L+ +H VGPN + ++ Q L Y E +N I PLLS Sbjct 1384 LVKH---TPNIIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSI---PLLST 1437 Query 312 GIFGA---KPLQSL 322 GI+ + +QSL Sbjct 1438 GIYAGGKDRVMQSL 1451 >RecName: Full=Macro domain-containing protein XAC3343 [Xanthomonas citri pv. citri str. 306] Sequence ID: Q8PHB6.2 Length: 179 Range 1: 17 to 142 Score:38.5 bits(88), Expect:0.19, Method:Composition-based stats., Identities:36/126(29%), Positives:58/126(46%), Gaps:11/126(8%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQK--ESDDYIKLNGPLTVGGSCLLSGHNL-AK 272 VIVNAAN L GGGV GA+++A + + E+ ++ G + G +L A+ Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGEIRITDGFDLKAR 76 Query 273 KCLHVVGPNLNAG---EDIQLLKAAYENFNSQDILLA-----PLLSAGIFGAKPLQSLQV 324 H VGP G E QL +++ + ++ P +S GI+G Q+ ++ Sbjct 77 HIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARI 136 Query 325 CVQTVR 330 V R Sbjct 137 AVTETR 142 >RecName: Full=Uncharacterized protein Ta1105 [Thermoplasma acidophilum DSM 1728] Sequence ID: Q9HJ67.2 Length: 196 Range 1: 11 to 149 Score:38.9 bits(89), Expect:0.20, Method:Composition-based stats., Identities:41/144(28%), Positives:66/144(45%), Gaps:17/144(11%) Query 198 VAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGP- 256 +A++ DI + A IVNAAN L GGGV GA++ A + E + P Sbjct 11 LAVEVGDITESDAEA----IVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERYPN 66 Query 257 -LTVGGSCLLSGHNL-AKKCLHVVGPNLNAGEDIQ--LLKAAYEN-------FNSQDILL 305 L G + + G+ L A +H VGP G + + +L +Y + F DI Sbjct 67 GLPPGEAVITRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAF 126 Query 306 APLLSAGIFGAKPLQSLQVCVQTV 329 P LS G +G ++ ++ +++V Sbjct 127 -PALSTGAYGFPFDRAERIAIRSV 149 >RecName: Full=Uncharacterized protein TV0719 [Thermoplasma volcanium GSS1] Sequence ID: Q97AU0.1 Length: 186 Range 1: 22 to 134 Score:38.5 bits(88), Expect:0.20, Method:Compositional matrix adjust., Identities:38/115(33%), Positives:54/115(46%), Gaps:14/115(12%) Query 213 NPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGP--LTVGGSCLLSGHNL 270 N IVNAAN L GGGV GA++ + E + + P L G + + SG L Sbjct 22 NCEAIVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPKGLPPGEADITSGGKL 81 Query 271 -AKKCLHVVGPNLNAG-EDIQLLKAAYENFNSQDI--------LLAPLLSAGIFG 315 AK +H VGP ED + L ++Y + S +I + P +S GI+G Sbjct 82 KAKYVIHTVGPIYRGQEEDAETLYSSY--YRSLEIAKIHGIKCIAFPAISTGIYG 134 >RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName: Full=MACRO domain-containing protein 2; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD2; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD2; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD2 [Xenopus laevis] Sequence ID: Q6PAV8.1 Length: 418 Range 1: 84 to 204 Score:39.7 bits(91), Expect:0.26, Method:Compositional matrix adjust., Identities:40/129(31%), Positives:59/129(45%), Gaps:22/129(17%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 IVNAAN L GGGV G +++A+ ++ E + G G + + G+ L AK Sbjct 84 AIVNAANTSLLGGGGVDGCIHRASGPSLLAECREL----GGCETGQAKITCGYELPAKYV 139 Query 275 LHVVGP------NLNAGEDI-----QLLKAAYENFNSQDI--LLAPLLSAGIFGAKPLQS 321 +H VGP N +D+ L A EN DI + P +S GI+G + Sbjct 140 IHTVGPIARGHITPNHKQDLASCYNSSLTLATEN----DIRTIAFPCISTGIYGYPNEPA 195 Query 322 LQVCVQTVR 330 V + TV+ Sbjct 196 ANVALTTVK 204 >RecName: Full=Macro domain-containing protein in sno 5'region; AltName: Full=ORF7 [Streptomyces nogalater] Sequence ID: Q9EYI6.1 Length: 181 Range 1: 10 to 143 Score:38.1 bits(87), Expect:0.28, Method:Composition-based stats., Identities:42/138(30%), Positives:65/138(47%), Gaps:14/138(10%) Query 204 DIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY--IKLNGPLTVGG 261 DI ++ A +VNAAN L GGGV GA+++ A+ E + L G Sbjct 10 DITRQHADA----LVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGEGLPTGR 65 Query 262 SCLLSGHNL-AKKCLHVVGPNLNAGED-IQLLKAAY-ENFNSQDILLA-----PLLSAGI 313 + + +L A+ +H VGP ++ ED LL + Y E+ L A P LS G+ Sbjct 66 AVATTAGDLDARWVIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFPALSTGV 125 Query 314 FGAKPLQSLQVCVQTVRT 331 + + ++ V+TVRT Sbjct 126 YRWPMGDAARIAVETVRT 143 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1-non-structural protein 3 fusion; Short=nsp1-nsp3 fusion [Murine hepatitis virus strain defective JHM] Sequence ID: P26627.1 Length: 500 Range 1: 316 to 487 Score:39.7 bits(91), Expect:0.29, Method:Compositional matrix adjust., Identities:43/182(24%), Positives:76/182(41%), Gaps:13/182(7%) Query 755 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSE-AFEYYHTLDESFLGRYMSALNHTK 813 P ++ D+ K++ + E +T P+D T AF+ ++ S S H K Sbjct 316 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 375 Query 814 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALI 873 V G S NC+L S L+ +Q L ++F +Q+ + +AG F + Sbjct 376 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 429 Query 874 LAYSNKTV--GELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMG 931 + + K++ + G V + L + K N C CG + L G++AV + G Sbjct 430 VKSAPKSIILPQGGYVADFAYFFLSQCSF---KVHANWRCLKCGME-LKLQGLDAVFFYG 485 Query 932 TL 933 + Sbjct 486 DV 487 >RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName: Full=MACRO domain-containing protein 1; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD1; AltName: Full=Protein LRP16; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD1; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD1 [Mus musculus] Sequence ID: Q922B1.2 Length: 323 Range 1: 147 to 286 Score:39.3 bits(90), Expect:0.30, Method:Compositional matrix adjust., Identities:43/150(29%), Positives:70/150(46%), Gaps:22/150(14%) Query 193 KLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIK 252 +L + +++ DI K A IVNAAN L GGGV G +++A + +D+ Sbjct 147 QLNEKISLYRGDITKLEVDA----IVNAANSSLLGGGGVDGCIHRAAGSLL---TDECRT 199 Query 253 LNGPLTVGGSCLLSGHNL-AKKCLHVVGP---NLNAGEDIQLLKAAYENFNSQDILLA-- 306 L T G + + G+ L AK +H VGP L++ Y +S D+LL Sbjct 200 LQNCET-GKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHR 256 Query 307 ------PLLSAGIFGAKPLQSLQVCVQTVR 330 P +S G+FG ++ +V + ++R Sbjct 257 LRSVAFPCISTGVFGYPNEEAAEVVLASLR 286 >RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName: Full=MACRO domain-containing protein 2; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD2; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD2; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD2 [Homo sapiens] Sequence ID: A1Z1Q3.2 Length: 425 Range 1: 86 to 191 Score:39.3 bits(90), Expect:0.35, Method:Compositional matrix adjust., Identities:39/112(35%), Positives:55/112(49%), Gaps:18/112(16%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 IVNAAN L GGGV G +++A + E + LNG G + + G++L AK Sbjct 86 AIVNAANASLLGGGGVDGCIHRAAGPCLLAECRN---LNG-CDTGHAKITCGYDLPAKYV 141 Query 275 LHVVGP------NLNAGEDI-----QLLKAAYENFNSQDILLAPLLSAGIFG 315 +H VGP N + ED+ LK EN N + + P +S GI+G Sbjct 142 IHTVGPIARGHINGSHKEDLANCYKSSLKLVKEN-NIRSVAF-PCISTGIYG 191 >RecName: Full=Uncharacterized protein Mb1934c [Mycobacterium tuberculosis variant bovis AF2122/97] Sequence ID: Q7TZB9.1 Length: 358 Range 1: 206 to 280 Score:38.5 bits(88), Expect:0.50, Method:Composition-based stats., Identities:23/79(29%), Positives:40/79(50%), Gaps:5/79(6%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 I NAAN L+H GGVA A+ +A +Q+ES + P+ +G + + ++ A+ + Sbjct 206 ITNAANTRLRHAGGVAAAIARAGGPELQRESTE----KAPIGLGEAVETTAGDMPARYVI 261 Query 276 HVVGPNLNAGEDIQLLKAA 294 H L +++ AA Sbjct 262 HAATMELGGPTSGEIITAA 280 >RecName: Full=Uncharacterized protein Rv1899c [Mycobacterium tuberculosis H37Rv] Sequence ID: P9WK29.1 Length: 359 Range 1: 207 to 281 Score:38.5 bits(88), Expect:0.50, Method:Composition-based stats., Identities:23/79(29%), Positives:40/79(50%), Gaps:5/79(6%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 I NAAN L+H GGVA A+ +A +Q+ES + P+ +G + + ++ A+ + Sbjct 207 ITNAANTRLRHAGGVAAAIARAGGPELQRESTE----KAPIGLGEAVETTAGDMPARYVI 262 Query 276 HVVGPNLNAGEDIQLLKAA 294 H L +++ AA Sbjct 263 HAATMELGGPTSGEIITAA 281 >RecName: Full=Uncharacterized protein MT1950 [Mycobacterium tuberculosis CDC1551] Sequence ID: P9WK28.1 Length: 374 Range 1: 222 to 296 Score:38.5 bits(88), Expect:0.52, Method:Composition-based stats., Identities:23/79(29%), Positives:40/79(50%), Gaps:5/79(6%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 I NAAN L+H GGVA A+ +A +Q+ES + P+ +G + + ++ A+ + Sbjct 222 ITNAANTRLRHAGGVAAAIARAGGPELQRESTE----KAPIGLGEAVETTAGDMPARYVI 277 Query 276 HVVGPNLNAGEDIQLLKAA 294 H L +++ AA Sbjct 278 HAATMELGGPTSGEIITAA 296 >RecName: Full=ADP-ribose glycohydrolase MACROD1; AltName: Full=MACRO domain-containing protein 1; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD1; AltName: Full=Protein LRP16; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD1; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD1 [Bos taurus] Sequence ID: Q2KHU5.1 Length: 325 Range 1: 140 to 288 Score:38.1 bits(87), Expect:0.61, Method:Compositional matrix adjust., Identities:44/161(27%), Positives:71/161(44%), Gaps:24/161(14%) Query 182 EEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNG 241 EEP ++ +L + +++ DI K A IVNAAN L GGGV G +++A Sbjct 140 EEP--KYKKDKQLNEKISLFRGDITKLEVDA----IVNAANSSLLGGGGVDGCIHRAAGP 193 Query 242 AMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCLHVVGPNLN---AGEDIQLLKAAYEN 297 + E G + + G+ L AK +H VGP + + L++ Y Sbjct 194 LLTDECRTLQNCE----TGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCY-- 247 Query 298 FNSQDILLA--------PLLSAGIFGAKPLQSLQVCVQTVR 330 +S D+LL P +S G+FG + +V + +R Sbjct 248 LSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALR 288 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336 vaccine] Sequence ID: Q99IE7.1 Length: 2116 Range 1: 797 to 1016 Score:38.9 bits(89), Expect:0.62, Method:Compositional matrix adjust., Identities:54/228(24%), Positives:84/228(36%), Gaps:33/228(14%) Query 177 PEPTPEEPVNQFT-GYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGAL 235 P PT +P + Y + V ++ DI+ V+VNAAN L G GV GA+ Sbjct 797 PTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAI 854 Query 236 NKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGED 287 A+ + + P G + GH +H V P L GE Sbjct 855 FANATAALAAD----CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE- 909 Query 288 IQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTV------RTQVYI 335 LL+ AY + + PLL AG++G +SL+ + R ++I Sbjct 910 -ALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAESLRAALAATRAEPAERVSLHI 968 Query 336 AVNDKALYEQVVMDYLDNLKPRVEAPKQEEP----PNTEDSKTEEKSV 379 D+A + L R +P EP P + + ++S Sbjct 969 CHPDRATLTHASVLVGAGLAARRVSPPPTEPLASCPAGDPGRPAQRSA 1016 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336] Sequence ID: Q99IE5.1 Length: 2116 Range 1: 797 to 1016 Score:38.9 bits(89), Expect:0.63, Method:Compositional matrix adjust., Identities:54/228(24%), Positives:84/228(36%), Gaps:33/228(14%) Query 177 PEPTPEEPVNQFT-GYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGAL 235 P PT +P + Y + V ++ DI+ V+VNAAN L G GV GA+ Sbjct 797 PTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAI 854 Query 236 NKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGED 287 A+ + + P G + GH +H V P L GE Sbjct 855 FANATAALAAD----CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE- 909 Query 288 IQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTV------RTQVYI 335 LL+ AY + + PLL AG++G +SL+ + R ++I Sbjct 910 -ALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAESLRAALAATRAEPAERVSLHI 968 Query 336 AVNDKALYEQVVMDYLDNLKPRVEAPKQEEP----PNTEDSKTEEKSV 379 D+A + L R +P EP P + + ++S Sbjct 969 CHPDRATLTHASVLVGAGLAARRVSPPPTEPLASCPAGDPGRPAQRSA 1016 >RecName: Full=Macro domain-containing protein mll7730 [Mesorhizobium japonicum MAFF 303099] Sequence ID: Q985D2.1 Length: 176 Range 1: 3 to 159 Score:37.0 bits(84), Expect:0.69, Method:Compositional matrix adjust., Identities:50/169(30%), Positives:77/169(45%), Gaps:21/169(12%) Query 193 KLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIK 252 K D + I DI K A IVNAAN L GGGV GA+++A ++ E Sbjct 3 KALDRIRIHTGDITKLDVDA----IVNAANTLLLGGGGVDGAIHRAAGRELEVECR---M 55 Query 253 LNGPLTVGGSCLLSGHNL-AKKCLHVVGPNLNAG--EDIQLLKAAYEN------FNSQDI 303 LNG VG + + G+ L A+ +H VGP G + +LL + Y + N Sbjct 56 LNG-CKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRS 114 Query 304 LLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLD 352 + P +S G++ ++ + V TV + + +KA+ E V+ D Sbjct 115 VAFPAISTGVYRYPKDEATGIAVGTVS----MVIEEKAMPETVIFCCFD 159 >RecName: Full=ADP-ribose glycohydrolase MACROD2; AltName: Full=MACRO domain-containing protein 2; AltName: Full=O-acetyl-ADP-ribose deacetylase MACROD2; AltName: Full=[Protein ADP-ribosylaspartate] hydrolase MACROD2; AltName: Full=[Protein ADP-ribosylglutamate] hydrolase MACROD2 [Mus musculus] Sequence ID: Q3UYG8.1 Length: 475 Range 1: 86 to 191 Score:38.1 bits(87), Expect:0.72, Method:Compositional matrix adjust., Identities:39/112(35%), Positives:55/112(49%), Gaps:18/112(16%) Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKC 274 IVNAAN L GGGV G +++A + E + LNG G + + G++L AK Sbjct 86 AIVNAANASLLGGGGVDGCIHRAAGPCLLAECRN---LNG-CETGHAKITCGYDLPAKYV 141 Query 275 LHVVGP------NLNAGEDI-----QLLKAAYENFNSQDILLAPLLSAGIFG 315 +H VGP N + ED+ LK EN N + + P +S GI+G Sbjct 142 IHTVGPIARGHINGSHKEDLANCYQSSLKLVKEN-NLRSVAF-PCISTGIYG 191 >RecName: Full=O-acetyl-ADP-ribose deacetylase 2; AltName: Full=Regulator of RNase III activity 2 [Pantoea vagans C9-1] Sequence ID: E1PL40.1 Length: 171 Range 1: 19 to 149 Score:36.6 bits(83), Expect:0.80, Method:Compositional matrix adjust., Identities:38/131(29%), Positives:54/131(41%), Gaps:16/131(12%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKKCL 275 I+N AN L GGGV GA+++A + E G VG + + L A + Sbjct 19 IINVANSSLLGGGGVDGAIHRAGGPVILAECQAIRSRQGGCKVGEAVITGAGTLPADYVI 78 Query 276 HVVGPNLNAG---EDIQLLKAAYENF-----NSQDILLAPLLSAGIFG-------AKPLQ 320 H VGP + G ED QL F + + P +S GI+G A L Sbjct 79 HTVGPRWSDGRHNEDTQLKSVYLSCFKLVGHHGIKTVSFPNISTGIYGFPKKRAAAIALD 138 Query 321 SLQVCVQTVRT 331 ++ C+ RT Sbjct 139 VIKHCIAENRT 149 >RecName: Full=Trigger factor; Short=TF; AltName: Full=PPIase [Clostridioides difficile 630] Sequence ID: Q180E9.1 Length: 428 Range 1: 209 to 334 Score:37.4 bits(85), Expect:1.2, Method:Composition-based stats., Identities:36/139(26%), Positives:64/139(46%), Gaps:23/139(16%) Query 284 AGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALY 343 AGE++++ E ++SQD+ P+ +F K + V+ + A++D+ Sbjct 209 AGEEVEVNVTFPEEYHSQDLAGKPV----VFNVK--------INDVKVKELSALDDEFAK 256 Query 344 EQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQK----------PVDVKPKIKAC 393 + D LD LK V A +EE N D++T SVV+K V ++ +I Sbjct 257 DTSEFDSLDELKADVRAKLEEEAKNRADAET-RNSVVEKVAENTEIEIPEVMIQHQIDNM 315 Query 394 IDEVTTTLEETKFLTNKLL 412 ++E+ L+ F +LL Sbjct 316 LNELNYQLQYQGFGLQQLL 334 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain BRDII] Sequence ID: Q6X2U2.1 Length: 2116 Range 1: 777 to 1012 Score:37.7 bits(86), Expect:1.4, Method:Compositional matrix adjust., Identities:56/242(23%), Positives:90/242(37%), Gaps:27/242(11%) Query 159 EEEDWLDDTTEQSEIEPEPEPTPE--EPVNQFT-GYLKLTDNVAIKCVDIVKEAQSANPM 215 E D D + EP TP +P + Y + V ++ +I+ Sbjct 777 EPADRARDAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMDPPPGCK-- 834 Query 216 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-KKC 274 V+VNAAN L G GV GA+ + ++ ++D +L P G + GH Sbjct 835 VVVNAANEGLLAGSGVCGAIFASAAASL---AEDCRRL-APCPTGEAVATPGHGCGYAHI 890 Query 275 LHVVGPNLNAG-----EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQ 323 +H V P + LL+ AY + + PLL AGI+G +SL+ Sbjct 891 IHAVAPRRPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYGWSAAESLR 950 Query 324 VCVQTV------RTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEK 377 + R ++I D+A + L R +P EPP + + + Sbjct 951 AALAAARTEPAERVSLHICHPDRATLMHASVLVGAGLAARRVSPPPTEPPASRPADDPGR 1010 Query 378 SV 379 S Sbjct 1011 SA 1012 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain M33] Sequence ID: Q86500.2 Length: 2116 Range 1: 812 to 1016 Score:37.0 bits(84), Expect:2.3, Method:Compositional matrix adjust., Identities:50/213(23%), Positives:79/213(37%), Gaps:32/213(15%) Query 191 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 250 Y + V ++ DI+ V+VNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAAD---- 865 Query 251 IKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGEDIQLLKAAYENFNSQD 302 + P +G + GH +H V P L GE LL+ AY + + Sbjct 866 CRRLAPCPIGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE--ALLERAYRSIVALA 923 Query 303 ILLA------PLLSAGIFGAKPLQSLQVCVQTV------RTQVYIAVNDKALYEQVVMDY 350 PLL AG++G +SL+ + R ++I D+A + Sbjct 924 AARRWARVACPLLGAGVYGWSAAESLRAALAATRAEPAERVSLHICHPDRATLTHASVLV 983 Query 351 LDNLKPRVEAPKQEEP----PNTEDSKTEEKSV 379 L R +P EP P + + ++S Sbjct 984 GAGLAARRVSPPPTEPLASCPAGDPGRPAQRSA 1016 >RecName: Full=Macro domain-containing protein in non 5'region; AltName: Full=ORF1 [Streptomyces griseus] Sequence ID: Q9KHE2.1 Length: 177 Range 1: 23 to 146 Score:35.0 bits(79), Expect:3.4, Method:Composition-based stats., Identities:37/127(29%), Positives:55/127(43%), Gaps:16/127(12%) Query 216 VIVNAANIHLKHGGGVAGALNKATN-----GAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 VIVNAAN L GGGV GA+++ + + Y K G T +G Sbjct 23 VIVNAANSSLLGGGGVDGAIHRRGGPDILAACRELRASRYGK--GLPTGQAVATTAGRLD 80 Query 271 AKKCLHVVGPNLNAGEDIQ-LLKAAYE-------NFNSQDILLAPLLSAGIFGAKPLQSL 322 A+ +H VGP + +D LL + Y ++ I P +S GI+G Sbjct 81 ARWIVHTVGPVFSGAQDRSALLASCYRESLRLAAELGARSIAF-PAISTGIYGWPMDDGA 139 Query 323 QVCVQTV 329 ++ V+TV Sbjct 140 RIAVRTV 146 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1364 to 1461 Score:36.2 bits(82), Expect:4.0, Method:Compositional matrix adjust., Identities:34/109(31%), Positives:48/109(44%), Gaps:20/109(18%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 276 +VNAAN K G GV A+ K + + N V + + HN K +H Sbjct 1364 VVNAANARGKPGDGVCRAIFKKWPKSFE---------NATTEVETAVMKPCHN--KVVIH 1412 Query 277 VVGPNLNA---GEDIQLLKAAYEN----FNSQDI--LLAPLLSAGIFGA 316 VGP+ E +LL+ AY + N + I + PLLS GI+ A Sbjct 1413 AVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGIYAA 1461 >RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' [Rhodopseudomonas palustris BisA53] Sequence ID: Q07KK8.1 Length: 1400 Range 1: 604 to 675 Score:36.2 bits(82), Expect:4.2, Method:Compositional matrix adjust., Identities:26/92(28%), Positives:42/92(45%), Gaps:20/92(21%) Query 906 VLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVM 965 V++ V +HCGQK T + + +M +G Y+ K G+S G+D Sbjct 604 VIDQVYRHCGQKETVIF-CDRIMALGF--YNAFKAGISF----GKDD------------- 643 Query 966 MSAPPAEYKLQQGTFLCANEYTGNYQCGHYTH 997 M P +++K+ + T A E+ Y G TH Sbjct 644 MVVPSSKWKIVEDTRTLAKEFEQQYNDGLITH 675 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1434 to 1578 Score:35.8 bits(81), Expect:5.1, Method:Compositional matrix adjust., Identities:45/156(29%), Positives:63/156(40%), Gaps:28/156(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A V+VNAAN + + G GV GAL A A NG + G + L+ G L Sbjct 1434 TAEEEVLVNAANSNGRPGDGVCGALYGAFGDAFP---------NGAIGAGNAVLVRG--L 1482 Query 271 AKKCLHVVGPNLNAGED---IQLLKAAYE------NFNSQDILLAPLLSAGIF--GAKPL 319 +H G + ++ + L+AAY N PLLS IF G L Sbjct 1483 EATIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNRL 1542 Query 320 -QSLQVCVQTVRT-----QVYIAVNDKALYEQVVMD 349 QS V+ T +Y N+ A Q ++D Sbjct 1543 EQSFSALVEAFDTTECDVTIYCLANNMAARIQQLID 1578 >RecName: Full=5'-3' exoribonuclease 2 [Aspergillus nidulans FGSC A4] Sequence ID: Q5BFH3.3 Length: 1032 Range 1: 814 to 875 Score:35.4 bits(80), Expect:5.5, Method:Compositional matrix adjust., Identities:19/66(29%), Positives:33/66(50%), Gaps:5/66(7%) Query 717 SLLSLREVKTIKV-FTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGK 775 + SL + ++I V + +TN+H + + G +FGP LD AD+ K H G+ Sbjct 814 GMPSLEDDRSIMVNYEIPKSTNIHKSM----LLRGVKFGPPALDNADIQATKSRAQHSGR 869 Query 776 TFFVLP 781 ++ P Sbjct 870 SYGGAP 875 >RecName: Full=50S ribosomal protein L11 [Methylococcus capsulatus str. Bath] Sequence ID: Q60A10.1 Length: 143 Range 1: 35 to 135 Score:33.9 bits(76), Expect:5.7, Method:Composition-based stats., Identities:34/109(31%), Positives:48/109(44%), Gaps:12/109(11%) Query 546 LMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITK----LNSLNE 601 +M C +A A Q KG+ + I Y R F + +K P AS++ K L S + Sbjct 35 IMEFC---KAFNAQTQNVEKGLPLPVVITVYADRSFTFITKTPPASVLLKKALGLKSGSS 91 Query 602 PLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTS 650 T +G VT LEE A+ +K P + + AV T G TS Sbjct 92 KPNTDKVGTVTRA-QLEEIAK----MKMPDLTAADMDAAVRTIAGSATS 135 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Cendehill] Sequence ID: Q9J6K9.2 Length: 2116 Range 1: 812 to 999 Score:35.4 bits(80), Expect:6.1, Method:Compositional matrix adjust., Identities:48/196(24%), Positives:72/196(36%), Gaps:28/196(14%) Query 191 YLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDY 250 Y + V ++ DI+ V+VNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAAD---- 865 Query 251 IKLNGPLTVGGSCLLSGHNLA-KKCLHVVGPN-------LNAGEDIQLLKAAYENF---- 298 + P G + GH +H V P L GE LL+ AY + Sbjct 866 CRRLAPCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGE--ALLERAYRSIVALA 923 Query 299 --NSQDILLAPLLSAGIFGAKPLQSLQVCVQTV------RTQVYIAVNDKALYEQVVMDY 350 + PLL AG++G +SL+ + R ++I D+A + Sbjct 924 AARRWAYVACPLLGAGVYGWSAAESLRAALAATRAEPVERVSLHICHPDRATLTHASVLV 983 Query 351 LDNLKPRVEAPKQEEP 366 L R +P EP Sbjct 984 GAGLAARRVSPPPTEP 999 >RecName: Full=Uncharacterized protein APE_1648.1 [Aeropyrum pernix K1] Sequence ID: Q9YBE9.2 Length: 189 Range 1: 26 to 78 Score:34.3 bits(77), Expect:6.3, Method:Composition-based stats., Identities:19/57(33%), Positives:31/57(54%), Gaps:4/57(7%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK 273 +VN AN + GGG AGAL +A +++E+ P+ VG + + SG +L + Sbjct 26 VVNPANSLMIMGGGAAGALKRAGGSVIEEEA----MRKAPVPVGEAVITSGGSLPAR 78 >RecName: Full=Macro domain-containing protein DR_2288 [Deinococcus radiodurans R1] Sequence ID: Q9RS39.1 Length: 170 Range 1: 18 to 139 Score:33.9 bits(76), Expect:6.6, Method:Composition-based stats., Identities:30/126(24%), Positives:56/126(44%), Gaps:16/126(12%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK--- 273 +V AAN L GGGV G +++A + + I+ G G + + +L ++ Sbjct 18 VVTAANKQLMGGGGVDGVIHRAAGPRLLQA----IRPIGGTPTGTAVITPAFDLERQGVK 73 Query 274 -CLHVVGPNLNAGE--DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQV 324 +H VGP G+ + +LL AY N + P +S G++G ++ + Sbjct 74 YVIHAVGPIWRGGQHGEAELLAGAYRESLRLGVENGCRSVAFPSISTGVYGYPLDRAAPI 133 Query 325 CVQTVR 330 + T++ Sbjct 134 ALATIQ 139 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1366 to 1463 Score:35.4 bits(80), Expect:7.2, Method:Compositional matrix adjust., Identities:33/109(30%), Positives:48/109(44%), Gaps:20/109(18%) Query 217 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 276 +VNAAN + G GV A+ K + + + G + L H KK +H Sbjct 1366 VVNAANPLGRPGEGVCRAIYKRWPNSFTDSATE---------TGTAKLTVCH--GKKVIH 1414 Query 277 VVGPNLNA---GEDIQLLKAAYEN----FNSQDI--LLAPLLSAGIFGA 316 VGP+ E ++LL+ AY N +I + PLLS GI+ A Sbjct 1415 AVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAA 1463 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1433 to 1577 Score:35.0 bits(79), Expect:7.9, Method:Compositional matrix adjust., Identities:45/156(29%), Positives:63/156(40%), Gaps:28/156(17%) Query 211 SANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL 270 +A V+VNAAN + + G GV GAL A A NG + G + L+ G L Sbjct 1433 TAEEEVLVNAANSNGRPGDGVCGALYGAFGDAFP---------NGAIGAGNAVLVRG--L 1481 Query 271 AKKCLHVVGPNLNAGED---IQLLKAAYE------NFNSQDILLAPLLSAGIF--GAKPL 319 +H G + ++ + L+AAY N PLLS IF G L Sbjct 1482 EATIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNRL 1541 Query 320 -QSLQVCVQTVRT-----QVYIAVNDKALYEQVVMD 349 QS V+ T +Y N+ A Q ++D Sbjct 1542 EQSFGALVEAFDTTECDVTIYCLANNMAARIQQLID 1577 >RecName: Full=NADH-ubiquinone oxidoreductase chain 6; AltName: Full=NADH dehydrogenase subunit 6 [Caenorhabditis briggsae] Sequence ID: Q8HEC0.2 Length: 144 Range 1: 45 to 110 Score:33.1 bits(74), Expect:8.4, Method:Composition-based stats., Identities:21/66(32%), Positives:35/66(53%), Gaps:4/66(6%) Query 1490 YMLFTKFFYLLGLSAI--MQVFFGYFASHFISNSWLMWFI--ISIVQMAPVSAMVRMYIF 1545 ++ F+ F LL LS I + V+F + + S++ F+ ISI+ +PVS Y+ Sbjct 45 HIWFSYFICLLFLSGIFVILVYFSSLSKINVVKSYMSLFLLLISIIYFSPVSMEYTNYLG 104 Query 1546 FASFYY 1551 + FYY Sbjct 105 LSGFYY 110 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP15; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 7; Short=ARTD7; AltName: Full=B-aggressive lymphoma protein 3; AltName: Full=Poly [ADP-ribose] polymerase 15; Short=PARP-15 [Homo sapiens] Sequence ID: Q460N3.2 Length: 678 Range 1: 105 to 177 Score:34.7 bits(78), Expect:8.7, Method:Compositional matrix adjust., Identities:27/74(36%), Positives:38/74(51%), Gaps:3/74(4%) Query 216 VIVNAANIHLKHGGG-VAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-AKK 273 VIVN+ ++L+ GGG ++ A + +QKE DD + VG + SG NL K Sbjct 105 VIVNSVPMNLQLGGGPLSRAFLQKAGPMLQKELDDR-RRETEEKVGNIFMTSGCNLDCKA 163 Query 274 CLHVVGPNLNAGED 287 LH V P N G + Sbjct 164 VLHAVAPYWNNGAE 177 >RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' [Rhodopseudomonas palustris BisB18] Sequence ID: Q211D9.1 Length: 1401 Range 1: 604 to 675 Score:35.0 bits(79), Expect:9.1, Method:Compositional matrix adjust., Identities:26/92(28%), Positives:41/92(44%), Gaps:20/92(21%) Query 906 VLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVM 965 V++ V +HCGQK T + + +M +G Y+ K G+S G+D Sbjct 604 VIDQVYRHCGQKETVMF-CDRIMALGF--YNAFKAGISF----GKDD------------- 643 Query 966 MSAPPAEYKLQQGTFLCANEYTGNYQCGHYTH 997 M P +++K + T A E+ Y G TH Sbjct 644 MVVPASKWKTVEDTRTLAKEFEQQYNDGLITH 675 >RecName: Full=Uncharacterized protein TK1890 [Thermococcus kodakarensis KOD1] Sequence ID: Q5JER1.1 Length: 180 Range 1: 19 to 142 Score:33.5 bits(75), Expect:9.3, Method:Composition-based stats., Identities:44/128(34%), Positives:64/128(50%), Gaps:26/128(20%) Query 217 IVNAANIHLKHGGGVAGALNKATNG-----------AMQKE-SDDYIKLNGPLTVGGSCL 264 IVNAAN +L+HGGGVA A+ KA G AM+++ D+I+ +G + V + Sbjct 19 IVNAANRYLEHGGGVAYAIAKAAAGDPREYIRISKEAMREQLGKDHIE-HGEVVVTPAMR 77 Query 265 LSGHNLAKKCLHVVGPNLNA--GEDI--QLLKAAY------ENFNSQDILLAPLLSAGIF 314 L H + + +H VGP ED +L KA E + I P +SAGI+ Sbjct 78 LEKHGI-RYVIHTVGPYCGGIWDEDKKEKLRKAILGALRKAEELGVKTIAF-PAVSAGIY 135 Query 315 GAKPLQSL 322 G PL+ + Sbjct 136 GC-PLEEV 142 >RecName: Full=Tubby-like F-box protein 3; Short=OsTLP3; AltName: Full=Tubby-like F-box protein 5; Short=OsTLP5 [Oryza sativa Japonica Group] Sequence ID: Q8LJA9.1 Length: 448 Range 1: 231 to 359 Score:34.7 bits(78), Expect:9.4, Method:Compositional matrix adjust., Identities:41/137(30%), Positives:60/137(43%), Gaps:15/137(10%) Query 1023 TDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQP---L 1079 T V K S T I VSY+L+ V T ++ A E P +VP QP + Sbjct 231 TKVSPKVPSVTYNIAQVSYELN-VLGTRGPRRMRCMMHSIPASSVE-PGGIVPGQPEQIV 288 Query 1080 PNASFDNFKLTCSNTKFADDLNQMTGFTKP---ASRELSVTFFPDLNGDVVAIDYRHYSA 1136 P A D+F+ S T F+ T F+K S + S F D++G ++ D + Sbjct 289 PRALEDSFR---STTSFSQSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGD---DNG 342 Query 1137 SFKKGAKLL-HKPIVWH 1152 K+ +L +KP WH Sbjct 343 EIKERPLVLRNKPPRWH 359