PAL2NAL output

#------------------------------------------------------------------------#
#  WARNING: GYRB_ECOLY pepAlnPos 1: M does not correspond to atg
#  WARNING: GYRB_ECOLY pepAlnPos 438: R does not correspond to ggt
#  WARNING: GYRB_ECOLY pepAlnPos 761: S does not correspond to cgt
#  WARNING: GYRB_ECOLY pepAlnPos 762: R does not correspond to tgt
#------------------------------------------------------------------------#

                     M   S   N   S   Y   D   S   S   S   I   K   V   L   K   G   L   D   A   V   R
GYRB_ECOLY           atg tcg aat tct tat gac tcc tcc agt atc aaa gtc ctg aaa ggg ctg gat gcg gtg cgt
                     M   S   N   N   Y   D   S   S   S   I   K   V   L   K   G   L   D   A   V   R
Q9KVX3|GYRB_VIBCH    atg tcg aac aat tac gat tca tcg agt att aag gta ctg aag ggt ctg gat gcg gta cgc

                     K   R   P   G   M   Y   I   G   D   T   D   D   G   T   G   L   H   H   M   V
GYRB_ECOLY           aag cgc ccg ggt atg tat atc ggc gac acg gat gac ggc acc ggt ctg cac cac atg gta
                     K   R   P   G   M   Y   I   G   D   T   D   D   G   T   G   L   H   H   M   V
Q9KVX3|GYRB_VIBCH    aag cgt ccg ggt atg tac atc ggc gac act gat gat ggc acc ggt ctg cac cac atg gtt

                     F   E   V   V   D   N   A   I   D   E   A   L   A   G   H   C   K   E   I   I
GYRB_ECOLY           ttc gag gtg gta gat aac gct atc gac gaa gcg ctc gcg ggt cac tgt aaa gaa att atc
                     F   E   V   V   D   N   S   I   D   E   A   L   A   G   Y   C   K   D   I   V
Q9KVX3|GYRB_VIBCH    ttt gag gtg gtg gat aac tca att gat gaa gcg ttg gca ggt tac tgt aaa gac atc gtg

                     V   T   I   H   A   D   N   S   V   S   V   Q   D   D   G   R   G   I   P   T
GYRB_ECOLY           gtc acc att cac gcc gat aac tct gtc tct gta cag gat gac ggg cgc ggc att ccg acc
                     V   T   I   H   E   D   N   S   V   S   V   S   D   D   G   R   G   I   P   T
Q9KVX3|GYRB_VIBCH    gtc acc atc cac gaa gac aac tca gtg tca gtc agc gat gac ggt cgt ggt atc ccg acc

                     G   I   H   P   E   E   G   V   S   A   A   E   V   I   M   T   V   L   H   A
GYRB_ECOLY           ggt att cac ccg gaa gag ggc gta tcg gcg gcg gaa gtg atc atg acc gtt ctg cac gca
                     E   M   H   P   E   E   K   V   S   A   A   E   V   I   M   T   V   L   H   A
Q9KVX3|GYRB_VIBCH    gaa atg cat cct gaa gag aaa gtg tct gcg gca gaa gtc atc atg act gta ctg cac gcc

                     G   G   K   F   D   D   N   S   Y   K   V   S   G   G   L   H   G   V   G   V
GYRB_ECOLY           ggc ggt aaa ttt gac gat aac tcc tat aaa gtg tcc ggc ggt ctg cac ggc gtt ggt gtt
                     G   G   K   F   D   D   N   S   Y   K   V   S   G   G   L   H   G   V   G   V
Q9KVX3|GYRB_VIBCH    ggc ggt aaa ttt gac gac aac tcc tat aaa gtc tcc ggt ggt ctg cac ggg gta ggt gtg

                     S   V   V   N   A   L   S   Q   K   L   E   L   V   I   Q   R   E   G   K   I
GYRB_ECOLY           tcg gta gta aac gcc ctg tcg caa aaa ctg gag ctg gtt atc cag cgc gag ggt aaa att
                     S   V   V   N   A   L   S   E   K   V   L   L   T   I   Y   R   G   G   K   I
Q9KVX3|GYRB_VIBCH    tcg gtg gtt aac gcg ctt tct gaa aaa gtg ctg ctt acc att tat cgt ggt ggc aag atc

                     H   R   Q   I   Y   E   H   G   V   P   Q   A   P   L   A   V   T   G   E   T
GYRB_ECOLY           cac cgt cag atc tac gaa cac ggt gta ccg cag gcc ccg ctg gcg gtt acc ggc gag act
                     H   S   Q   T   Y   H   H   G   V   P   Q   A   P   L   A   V   V   G   E   T
Q9KVX3|GYRB_VIBCH    cat tcg caa act tac cat cat ggt gtg cca caa gca ccg ttg gct gtg gta ggt gag aca

                     E   K   T   G   T   M   V   R   F   W   P   S   L   E   T   F   T   N   V   T
GYRB_ECOLY           gaa aaa acc ggc acc atg gtg cgt ttc tgg ccc agc ctc gaa acc ttc acc aat gtg acc
                     E   R   T   G   T   T   V   R   F   W   P   S   A   Q   T   F   T   N   I   -
Q9KVX3|GYRB_VIBCH    gag cgt acc ggt act acc gta cgt ttc tgg cct agt gca cag act ttt acc aat atc ---

                     E   F   E   Y   E   I   L   A   K   R   L   R   E   L   S   F   L   N   S   G
GYRB_ECOLY           gag ttc gaa tat gaa att ctg gcg aaa cgt ctg cgt gag ttg tcg ttc ctc aac tcc ggc
                     E   F   H   Y   D   I   L   A   K   R   L   R   E   L   S   F   L   N   S   G
Q9KVX3|GYRB_VIBCH    gaa ttc cat tac gac att ttg gct aaa cgc ctg cgt gag ctg tca ttc ctg aac tct ggc

                     V   S   I   R   L   R   D   K   R   D   -   G   K   E   D   H   F   H   Y   E
GYRB_ECOLY           gtt tcc att cgt ctg cgc gac aag cgc gac --- ggc aaa gaa gac cac ttc cac tat gaa
                     V   S   I   K   L   T   D   E   R   E   E   D   K   K   D   H   F   M   Y   E
Q9KVX3|GYRB_VIBCH    gtg tcg atc aag ctg acc gat gaa cgt gaa gaa gat aaa aaa gac cac ttc atg tat gaa

                     G   G   I   K   A   F   V   E   Y   L   N   K   N   K   T   P   I   H   P   N
GYRB_ECOLY           ggc ggc atc aag gcg ttc gtt gaa tat ctg aac aag aac aaa acg ccg atc cac ccg aat
                     G   G   I   Q   A   F   V   T   H   L   N   R   N   K   T   P   I   H   E   K
Q9KVX3|GYRB_VIBCH    ggg ggt att caa gcg ttt gtg acc cac ttg aac cgt aac aaa acg cca atc cat gag aaa

                     I   F   Y   F   S   T   E   K   -   D   G   I   G   V   E   V   A   L   Q   W
GYRB_ECOLY           atc ttc tac ttc tcc act gaa aaa --- gac ggt att ggc gtc gaa gtg gcg ttg cag tgg
                     V   F   H   F   N   Q   E   R   E   D   G   I   S   V   E   V   A   M   Q   W
Q9KVX3|GYRB_VIBCH    gtc ttc cac ttt aac caa gag cgt gaa gat ggc atc agc gtg gaa gtg gca atg cag tgg

                     N   D   G   F   Q   E   N   I   Y   C   F   T   N   N   I   P   Q   R   D   G
GYRB_ECOLY           aac gat ggc ttc cag gaa aac atc tac tgc ttt acc aac aac att ccg cag cgt gac ggc
                     N   D   G   F   Q   E   N   I   Y   C   F   T   N   N   I   P   Q   R   D   G
Q9KVX3|GYRB_VIBCH    aac gat ggt ttc caa gaa aac atc tac tgc ttt act aac aac atc cca cag cgt gat ggt

                     G   T   H   L   A   G   F   R   A   A   M   T   R   T   L   N   A   Y   M   D
GYRB_ECOLY           ggt act cac ctg gca ggc ttc cgt gcg gcg atg acc cgt acc ctg aac gcc tac atg gac
                     G   T   H   L   A   G   F   R   G   A   L   T   R   T   L   N   N   Y   M   D
Q9KVX3|GYRB_VIBCH    ggt acc cac tta gcc ggt ttc cgt ggt gcg ttg acc cgt act ttg aac aac tac atg gac

                     K   E   G   Y   S   K   K   A   K   V   S   A   T   G   D   D   A   R   E   G
GYRB_ECOLY           aaa gaa ggc tac agc aaa aaa gcc aaa gtc agc gcc acc ggt gac gat gcg cgt gaa ggc
                     K   E   G   F   S   K   K   A   Q   A   A   T   S   G   D   D   A   R   E   G
Q9KVX3|GYRB_VIBCH    aaa gaa ggc ttc tcg aag aaa gcg caa gcg gca acc tcg ggt gat gat gcg cgt gaa ggc

                     L   I   A   V   V   S   V   K   V   P   D   P   K   F   S   S   Q   T   K   D
GYRB_ECOLY           ctg att gcg gtc gtt tcc gtg aaa gtg ccg gac ccg aaa ttc tcc tcc cag acc aaa gac
                     L   T   A   V   V   S   V   K   V   P   D   P   K   F   S   S   Q   T   K   D
Q9KVX3|GYRB_VIBCH    tta acg gca gtg gtt tcg gtg aaa gtg ccg gat cct aaa ttc tca agc caa acc aaa gat

                     K   L   V   S   S   E   V   K   S   A   V   E   Q   Q   M   N   E   L   L   A
GYRB_ECOLY           aaa ctg gtt tct tct gag gtg aaa tcg gcg gtt gaa cag cag atg aac gaa ctg ctg gca
                     K   L   V   S   S   E   V   K   S   A   V   E   S   A   M   N   E   K   L   A
Q9KVX3|GYRB_VIBCH    aag ctg gtt tct tcg gaa gta aaa tcc gcg gtt gag tca gcc atg aat gag aag ctg gcg

                     E   Y   L   L   E   N   P   T   D   A   K   I   V   V   G   K   I   I   D   A
GYRB_ECOLY           gaa tac ctg ctg gaa aac cca acc gac gcg aaa atc gtg gtt ggc aaa att atc gat gct
                     D   F   L   A   E   N   P   S   E   A   K   N   V   C   S   K   I   I   D   A
Q9KVX3|GYRB_VIBCH    gat ttc cta gcg gaa aac cca agc gaa gcg aaa aac gtt tgt tcg aag att att gat gcg

                     A   R   A   R   E   A   A   R   R   A   R   E   M   T   R   R   K   G   A   L
GYRB_ECOLY           gcc cgt gcc cgt gaa gcg gcg cgt cgc gcg cgt gaa atg acc cgc cgt aaa ggt gcg ctc
                     A   R   A   R   E   A   A   R   K   A   R   E   M   T   R   R   K   G   A   L
Q9KVX3|GYRB_VIBCH    gcg cgt gcg cgt gaa gcg gcg cgt aaa gcc cgg gaa atg act cgc cgt aaa ggc gcg ctg

                     D   L   A   G   L   P   G   K   L   A   D   C   Q   E   R   D   P   A   L   S
GYRB_ECOLY           gac tta gcg ggc ctg ccg ggc aaa ctg gca gac tgc cag gaa cgc gat ccg gcg ctt tcc
                     D   L   A   G   L   P   G   K   L   A   D   C   Q   E   K   D   P   A   L   S
Q9KVX3|GYRB_VIBCH    gat ctt gct ggc tta ccc ggc aaa ctg gcg gat tgt cag gaa aaa gac cca gca ttg tct

                     E   L   Y   L   V   E   G   D   S   A   G   G   S   A   K   Q   G   R   N   R
GYRB_ECOLY           gaa ctg tac ctg gtg gaa ggg gac tcc gcg ggc ggc tct gcg aag cag ggc ggt aac cgc
                     E   L   Y   I   V   E   G   D   S   A   G   G   S   A   K   Q   G   R   N   R
Q9KVX3|GYRB_VIBCH    gaa ctc tac ata gtg gag ggt gac tca gcg ggc ggt tca gcc aaa caa ggc cgt aac cgt

                     K   N   Q   A   I   L   P   L   K   G   K   I   L   N   V   E   K   A   R   F
GYRB_ECOLY           aag aac cag gcg att ctg ccg ctg aag ggt aaa atc ctc aac gtc gag aaa gcg cgc ttc
                     K   N   Q   A   I   L   P   L   K   G   K   I   L   N   V   E   K   A   R   F
Q9KVX3|GYRB_VIBCH    aag aat caa gcg att ctg ccg ctg aaa ggt aaa atc ctc aac gta gaa aaa gcg cgt ttt

                     D   K   M   L   S   S   Q   E   V   A   T   L   I   T   A   L   G   C   G   I
GYRB_ECOLY           gat aag atg ctc tct tct cag gaa gtg gcg acg ctt atc acc gcg ctt ggc tgt ggt atc
                     D   K   M   L   S   S   Q   E   V   A   T   L   I   T   A   L   G   C   G   I
Q9KVX3|GYRB_VIBCH    gac aag atg ttg tct tca caa gaa gtc gcg acc ctc atc act gca tta ggc tgt ggt atc

                     G   R   D   E   Y   N   P   D   K   L   R   Y   H   S   I   I   I   M   T   D
GYRB_ECOLY           ggt cgt gac gag tac aac ccg gac aaa ctg cgt tat cac agc atc atc atc atg acc gat
                     G   R   D   E   Y   N   P   D   K   L   R   Y   H   N   I   I   I   M   T   D
Q9KVX3|GYRB_VIBCH    ggc cgt gat gag tac aac cca gat aaa ctg cgt tat cac aac atc atc atc atg acc gat

                     A   D   V   D   G   S   H   I   R   T   L   L   L   T   F   F   Y   R   Q   M
GYRB_ECOLY           gcg gac gtc gac ggc tcg cac att cgt acg ctg ctg ttg acc ttc ttc tat cgt cag atg
                     A   D   V   D   G   S   H   I   R   T   L   L   L   T   F   F   Y   R   Q   M
Q9KVX3|GYRB_VIBCH    gcg gac gtc gac ggc tcg cac att cgt act ctg ctg ttg acc ttt ttc tac cgc caa atg

                     P   E   I   V   E   R   G   H   V   Y   I   A   Q   P   P   L   Y   K   V   K
GYRB_ECOLY           ccg gaa atc gtt gaa cgc ggt cac gtc tat atc gct cag ccg ccg ctg tac aaa gtg aag
                     P   E   L   I   E   R   G   Y   I   Y   I   A   Q   P   P   L   Y   K   V   K
Q9KVX3|GYRB_VIBCH    cct gag ttg att gag cgt ggt tac atc tac att gct cag cca cca ctg tat aaa gtg aag

                     K   G   K   Q   E   Q   Y   I   K   D   D   E   A   M   D   Q   Y   Q   I   S
GYRB_ECOLY           aaa ggc aag cag gaa cag tac att aaa gac gac gaa gcg atg gat cag tac cag atc tct
                     K   G   K   Q   E   Q   Y   I   K   D   E   E   A   M   N   Q   Y   Q   V   A
Q9KVX3|GYRB_VIBCH    aaa ggc aaa caa gag cag tac atc aaa gat gaa gag gcg atg aac cag tac caa gtg gca

                     I   A   L   D   G   A   T   L   H   T   N   A   S   A   P   A   L   A   G   E
GYRB_ECOLY           atc gcg ctg gac ggc gca acg ctg cac acc aac gcc agt gca ccg gca ttg gct ggc gaa
                     L   A   M   D   G   A   E   L   H   V   N   A   D   A   P   A   L   A   G   E
Q9KVX3|GYRB_VIBCH    ctg gcg atg gat ggt gca gag ctg cac gtg aat gcc gat gcg cca gcg tta gcg ggt gaa

                     A   L   E   K   L   V   S   E   Y   N   A   T   Q   K   M   I   N   R   M   E
GYRB_ECOLY           gcg tta gag aaa ctg gta tct gag tac aac gcg acg cag aaa atg atc aat cgt atg gag
                     P   L   E   K   L   V   Q   Q   Y   N   A   A   I   K   L   V   E   R   M   S
Q9KVX3|GYRB_VIBCH    ccg ctg gag aag ctg gtt cag caa tat aac gcc gcg atc aag ctg gtt gag cgc atg agc

                     R   R   Y   P   K   A   M   L   K   E   L   I   Y   Q   P   T   L   T   E   A
GYRB_ECOLY           cgt cgt tat ccg aaa gca atg ctg aaa gag ctt atc tat cag ccg acg ttg acg gaa gct
                     R   R   Y   P   Y   A   M   L   H   E   L   I   Y   V   P   R   I   N   A   E
Q9KVX3|GYRB_VIBCH    cgc cgt tac cct tac gcg atg ctg cat gag ctg att tac gta cca cgc atc aat gcc gag

                     D   L   S   D   E   Q   T   V   T   R   W   V   N   A   L   V   S   E   L   N
GYRB_ECOLY           gac ctt tct gat gag cag acc gtt acc cgc tgg gtg aac gcg ctg gtc agc gaa ctg aac
                     L   C   A   D   K   A   A   V   E   A   W   T   Q   R   L   V   E   Q   L   N
Q9KVX3|GYRB_VIBCH    ctg tgt gcg gat aaa gcc gcg gtt gaa gct tgg aca cag cgt tta gtc gaa cag ttg aat

                     D   K   E   Q   H   G   S   Q   W   K   F   D   V   H   T   N   A   E   Q   N
GYRB_ECOLY           gac aaa gaa cag cac ggc agc cag tgg aag ttt gat gtt cac acc aat gct gag caa aac
                     A   K   E   V   G   A   S   Q   Y   S   V   L   V   E   H   N   A   E   L   N
Q9KVX3|GYRB_VIBCH    gct aaa gaa gtg ggt gcg agc caa tac agc gtt ctg gtt gaa cac aat gct gag ctg aat

                     L   F   E   P   I   V   R   V   R   T   H   G   V   D   T   D   Y   P   L   D
GYRB_ECOLY           ctg ttc gag ccg att gtt cgc gtg cgt acc cac ggt gtg gat act gac tat ccg ctg gat
                     V   Y   L   P   K   I   Q   V   R   T   H   G   V   T   H   E   Y   L   L   S
Q9KVX3|GYRB_VIBCH    gtg tac ttg cca aaa att cag gtg cgt act cac ggt gtg act cat gaa tac tta ctg agc

                     H   E   F   I   T   G   G   E   Y   R   R   I   C   T   L   G   E   K   L   R
GYRB_ECOLY           cac gag ttt atc acc ggt ggc gaa tat cgt cgt atc tgc acg ctg ggt gag aaa ctg cgt
                     A   D   L   I   N   S   K   E   Y   A   K   L   A   D   L   S   E   A   L   D
Q9KVX3|GYRB_VIBCH    gcg gat ctg atc aac tcg aaa gag tac gct aag tta gcc gat ctg tcg gaa gcg ctg gac

                     G   L   L   E   E   D   A   F   I   E   R   G   E   R   R   Q   P   V   A   S
GYRB_ECOLY           ggc ttg ctg gaa gaa gat gcg ttt atc gaa cgt ggc gag cgt cgt cag ccg gta gcc agc
                     G   L   I   E   A   G   A   F   I   K   R   G   E   R   V   Q   P   I   S   S
Q9KVX3|GYRB_VIBCH    ggt ttg att gaa gcg gga gcg ttt atc aaa cgt ggt gag cga gta caa ccg atc agc agc

                     F   E   Q   A   L   D   W   L   V   K   E   S   R   R   G   L   S   I   Q   R
GYRB_ECOLY           ttc gag cag gcg ctg gac tgg ctg gtg aaa gag tcc cgt cgc ggc ctc tcc atc cag cgt
                     F   A   A   A   L   D   W   L   I   K   E   S   R   R   G   L   S   I   Q   R
Q9KVX3|GYRB_VIBCH    ttt gcc gcc gcg ctg gat tgg ctg atc aaa gag tcg cgc cgc ggt ctg tct atc caa cgc

                     Y   K   G   L   G   E   M   N   P   E   Q   L   W   E   T   T   M   D   P   E
GYRB_ECOLY           tat aaa ggt ctg ggc gag atg aac ccg gaa cag ctg tgg gaa acc act atg gac ccg gaa
                     Y   K   G   L   G   E   M   N   P   D   Q   L   W   E   T   T   M   D   P   E
Q9KVX3|GYRB_VIBCH    tat aaa ggt ctg ggc gaa atg aac cct gat cag ctg tgg gaa act acg atg gat cca gaa

                     S   R   R   M   L   R   V   T   V   K   D   A   I   A   A   D   Q   L   F   T
GYRB_ECOLY           cgt tgt cgt atg ctg cgc gtt acc gtt aaa gat gcg att gct gcc gac cag ttg ttc acc
                     T   R   R   M   M   Q   V   T   I   E   D   A   V   G   A   D   E   L   F   T
Q9KVX3|GYRB_VIBCH    acg cgt cgt atg atg caa gtc act atc gaa gat gcg gta ggc gcg gac gaa ctg ttc acg

                     T   L   M   G   D   A   V   E   P   R   R   A   F   I   E   E   N   A   L   K
GYRB_ECOLY           acg ctg atg ggc gac gcc gtt gaa ccg cgc cgt gcg ttt att gaa gag aac gcc ctg aaa
                     T   L   M   G   D   Q   V   E   P   R   R   A   F   I   E   T   N   A   L   K
Q9KVX3|GYRB_VIBCH    acg ctc atg ggc gat caa gtt gaa cca cgt cgt gca ttt atc gaa acc aac gca ctg aaa

                     A   A   N   I   D   I
GYRB_ECOLY           gcg gcg aat atc gat att
                     V   A   N   L   D   V
Q9KVX3|GYRB_VIBCH    gtg gcc aac ctc gac gta