########################################
# Program: needle
# Rundate: Tue Apr 03 2007 16:55:39
# Commandline: needle
#    [-asequence] 2D57.fasta
#    [-bsequence] P47863.fasta
#    -outfile alignment.needle
# Align_format: srspair
# Report_file: alignment.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SEQUENCE
# 2: AQP4_RAT
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 323
# Identity:     301/323 (93.2%)
# Similarity:   301/323 (93.2%)
# Gaps:          22/323 ( 6.8%)
# Score: 1551.0
# 
#
#=======================================

2D57            1 ----------------------MVAFKGVWTQAFWKAVTAEFLAMLIFVL     28
                                        ||||||||||||||||||||||||||||
P47863          1 MSDGAAARRWGKCGPPCSRESIMVAFKGVWTQAFWKAVTAEFLAMLIFVL     50

2D57           29 LSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAV     78
                  ||||||||||||||||||||||||||||||||||||||||||||||||||
P47863         51 LSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAV    100

2D57           79 TVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTV    128
                  ||||||||||||||||||||||||||||||||||||||||||||||||||
P47863        101 TVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTV    150

2D57          129 HGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIG    178
                  ||||||||||||||||||||||||||||||||||||||||||||||||||
P47863        151 HGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIG    200

2D57          179 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEY    228
                  ||||||||||||||||||||||||||||||||||||||||||||||||||
P47863        201 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEY    250

2D57          229 VFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVH    278
                  ||||||||||||||||||||||||||||||||||||||||||||||||||
P47863        251 VFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVH    300

2D57          279 VIDIDRGDEKKGKDSSGEVLSSV    301
                  |||||||||||||||||||||||
P47863        301 VIDIDRGDEKKGKDSSGEVLSSV    323


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