package membraneprotein;
import java.util.*;
/**
 * <p>Title: </p>
 * <p>Description: </p>
 * <p>Copyright: Copyright (c) 2007</p>
 * <p>Company: </p>
 * @author not attributable
 * @version 1.0
 */

public class membraneprotein {
  public membraneprotein() {
  }
  public static void main(String[] args) {
    int TP = 0, TN = 0, FP = 0, FN = 0;
   String OPM =
       "+++HHHHHHHHHHHHHHH"+
"HHHHHHHH-------------HHHHHHHHHHHHHHHHHHH+++++++++HHHHHHHHHH-"+
"---HHHHHHHHHHHHHHHHHHHHHHHHH+++++++++++++++++++HHHHHHHHHHHHH"+
"HHHHHHHHHH----------HHHHHHHHHHHHHHH++++++++++HHHHHHHHHH-----"+
"--HHHHHHHHHHHHHHHHHHHHHH++";


   String TMHMM =
       "++++++HHHHHHHHHHHH"+
"HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH++++++++++++++++"+
"+++HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH"+
"HHHHHHHH++++++++++++HHHHHHHHHHHHHHHHHHHHHHH-----------------"+
"--HHHHHHHHHHHHHHHHHHHHHHH+";

   for (int i = 0; i < TMHMM.length(); i++) {
     char t = OPM.charAt(i);
     char p = TMHMM.charAt(i);
     if (t == 'H'&& p == 'H'){TP++;}
     if (t == 'H'&& p != 'H'){FN++;}
     if (t != 'H'&& p == 'H'){FP++;}
     if (t != 'H'&& p != 'H'){TN++;}
   }
   
   double sensivity = (double) (TP) / (TP + FN);
   double specificity = (double) (TN) / (TN + FP);
   double precision = (double) (TP) / (TP + FP);
   double overpredicted = (double) (FP) / (FP + TP);
   double notpredicted = (double) (FN) / (TN + FN);
   System.out.println("Длина=" + TMHMM.length());
   System.out.println("TP=" + TP);
   System.out.println("TN=" + TN);
   System.out.println("FP=" + FP);
   System.out.println("FN=" + FN);
   System.out.println("чувствительность=" + sensivity);
   System.out.println("специфичность=" + specificity);
   System.out.println("точность=" + precision);
   System.out.println("сверхпредсказание=" + overpredicted);
   System.out.println("недопредсказание=" + notpredicted);

  }

}