Header
Program needle
Rundate Fri Mar 23 2007 20:10:55
Align format srspair
Report file temp_job8.needlep
Results
 
#=======================================
#
# Aligned_sequences: 2
# 1: SYG_HUMAN
# 2: SYG_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     138/305 (45.2%)
# Similarity:   181/305 (59.3%)
# Gaps:          30/305 ( 9.8%)
# Score: 665.0
# 
#
#=======================================

SYG_HUMAN          1 LKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDV     50
                     ||||||..:|:.:|.:|...||:...:||..|||.|||||.|.|.:|:..
SYG_METJA          1 LKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVECK     50

SYG_HUMAN         51 KNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQ--QEL     98
                     ...|.||||||::.                      ...:|..|:  :||
SYG_METJA         51 NCLESFRADHLIEE----------------------FVDVDTEGKTLKEL     78

SYG_HUMAN         99 ADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGI    148
                     .:|...:|::.|..|.:|.....|||||.|.|||||...||:||||||||
SYG_METJA         79 DELIRKHNIRCPKCGGELGEVKKFNLMFVTSIGPGGKRTGYMRPETAQGI    128

SYG_HUMAN        149 FLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF    198
                     |:.|:||.:|.:.||||...|||.|:|||||||.|:||:||||.||||:|
SYG_METJA        129 FIQFRRLAQFFRNKLPFGVVQIGKSYRNEISPRQGVIRLREFTQAEIEYF    178

SYG_HUMAN        199 VDPSEKDHPKFQNVADLHLYLYSAKAQV-----SGQSARKMRLGDAVEQG    243
                     |.|..|:|.||..|.|..:.|..|:.|:     ..:...|:.:|:|||:|
SYG_METJA        179 VHPERKEHEKFDLVKDEVVPLLPAERQMDENLSDDEKVIKISIGEAVEKG    228

SYG_HUMAN        244 VINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAES    293
                     :|.:..:.|||.....:|..:||..||:|||||:.|||||||.||||||.
SYG_METJA        229 IIRHQTIAYFIALTKRFLEAIGIDKDKIRFRQHLPNEMAHYAIDCWDAEI    278

SYG_HUMAN        294 KTSY-    297
                     .|.. 
SYG_METJA        279 YTERF    283


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