FastQCFastQC Report
Пн 22 дек 2014
Ath_tae_CTTGTA_L003_R1_002.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R1_002.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC7500.020.26091248-49
TCGGAAG16200.018.7632713
CGTATGC9150.017.64250444-45
TATGCCG9200.017.54947546-47
GAGCACA18100.017.3210499
GCCGTCT7800.017.04644248-49
AGAGCAC18300.016.0932588
ATGCCGT9300.014.80771446-47
GTATGCC9850.014.70164844-45
GCACACG10850.014.01189810-11
ACGTCTG11350.013.81295714-15
CGTCTGA12650.013.33242416-17
GATCGGA22800.013.3312991
CGGAAGA24500.012.9883014
ATCGGAA26150.012.5331162
CACACGT13550.012.27164512-13
CCAGTCA16500.012.23634926-27
AGTCACC15200.012.18899428-29
CCCGGGG3651.6139119E-411.7125938
GTCACCT14150.011.58269228-29
Produced by FastQC (version 0.11.2)