Running MakePangenome..
Information about input data:
 Number of genomes:     4
 Number of sequences:   4
 Number of sequences per genome:        1
 Total length of input (bp):    6657863
 Minimum genome length (bp):    1615199
 Median genome length (bp):     1680863
 Average genome length (bp):    1664465
 Maximum genome length (bp):    1680937

============================

[2021-Nov-15 22:10:15 UTC+03:00] BeginIteration 1, AnchorJoinerFast

npge PostProcessing
Length of all major blocks of at least 2 fragments:     111153

Stable blocks (represented in all genomes once, but not minor):
 fragments:     576
 blocks:        144
 Block identity:
  min:  0.8977
  median:       0.9415
  avg:  0.9382
  max:  0.9763

 Identity of joined blocks:     0.949734
 Nucleotides in blocks: 352024
  The percentage of input length:       5.28%


============================

[2021-Nov-15 22:11:01 UTC+03:00] BeginIteration 2, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:     1399127

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7364
 blocks:        1841
 Block identity:
  min:  0.8425
  median:       0.9464
  avg:  0.9436
  max:  1

 Identity of joined blocks:     0.951769
 Nucleotides in blocks: 5272933
  The percentage of input length:       79.19%

Distance from previous pre-pangenome (bp):      4991060
 The percentage of input length:        74.96%
Distance is sufficient to carry on

============================

[2021-Nov-15 22:12:22 UTC+03:00] BeginIteration 3, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:     1596351

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7924
 blocks:        1981
 Block identity:
  min:  0.8425
  median:       0.9462
  avg:  0.9435
  max:  1

 Identity of joined blocks:     0.951753
 Nucleotides in blocks: 5622045
  The percentage of input length:       84.44%

Distance from previous pre-pangenome (bp):      596549
 The percentage of input length:        8.96%
Distance is sufficient to carry on

============================

[2021-Nov-15 22:13:14 UTC+03:00] BeginIteration 4, AnchorJoinerFast

qnpge
Length of all major blocks of at least 2 fragments:     1605759

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7924
 blocks:        1981
 Block identity:
  min:  0.8425
  median:       0.9462
  avg:  0.9435
  max:  1

 Identity of joined blocks:     0.951754
 Nucleotides in blocks: 5622489
  The percentage of input length:       84.44%

Distance from previous pre-pangenome (bp):      29783
 The percentage of input length:        0.45%
Distance is sufficient to carry on

============================

[2021-Nov-15 22:14:03 UTC+03:00] BeginIteration 5, AnchorJoiner

Length of all major blocks of at least 2 fragments:     1617329

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7956
 blocks:        1989
 Block identity:
  min:  0.8425
  median:       0.9462
  avg:  0.9434
  max:  1

 Identity of joined blocks:     0.951726
 Nucleotides in blocks: 5625490
  The percentage of input length:       84.49%

Distance from previous pre-pangenome (bp):      31920
 The percentage of input length:        0.48%
Distance is sufficient to carry on

============================

[2021-Nov-15 22:15:46 UTC+03:00] BeginIteration 6, AnchorJoiner

Length of all major blocks of at least 2 fragments:     1617187

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7944
 blocks:        1986
 Block identity:
  min:  0.8425
  median:       0.9462
  avg:  0.9434
  max:  1

 Identity of joined blocks:     0.951731
 Nucleotides in blocks: 5624259
  The percentage of input length:       84.47%

Distance from previous pre-pangenome (bp):      1582
 The percentage of input length:        0.02%
Distance is too low => stopping this loop

============================

[2021-Nov-15 22:16:36 UTC+03:00] BeginIteration 7, AnchorBlastJoiner

Length of all major blocks of at least 2 fragments:     1617598

Stable blocks (represented in all genomes once, but not minor):
 fragments:     7960
 blocks:        1990
 Block identity:
  min:  0.8468
  median:       0.9461
  avg:  0.9433
  max:  1

 Identity of joined blocks:     0.951707
 Nucleotides in blocks: 5626561
  The percentage of input length:       84.51%

Distance from previous pre-pangenome (bp):      3356
 The percentage of input length:        0.05%
Distance is too low => stopping this loop

============================
[2021-Nov-15 22:19:39 UTC+03:00] StopInfo The pangenome has been constructed.

Blocks' lengths:        1781396
 major: 1772231
 minor: 9165

============================
All major blocks of at least 2 fragments:
 fragments:     3507
 blocks:        879
 fragments / blocks:    3.9897
 Block identity:
  min:  0.8714
  median:       0.9548
  avg:  0.963
  max:  1

 Identity of joined blocks:     0.95187
 Block sizes:
  min:  2
  median:       4
  avg:  3.99
  max:  31

 Fragment lengths:
  min:  83
  median:       313
  avg:  1855.71
  max:  40596

 Fragment length spreading ((max - min) / avg) inside block:
  min:  0
  median:       0
  avg:  0.0037
  max:  0.2441

 GC content:
  min:  0.1726
  median:       0.3804
  avg:  0.3693
  max:  0.5335

 Nucleotides in blocks: 6507968
  The percentage of input length:       97.74%
 Total length of blocks:        1646540
  The percentage of total blocks' length:       92.42%

============================
Stable blocks (represented in all genomes once, but not minor):
 fragments:     1624
 blocks:        406
 fragments / blocks:    4
 Block identity:
  min:  0.8793
  median:       0.9424
  avg:  0.9388
  max:  0.9911

 Identity of joined blocks:     0.946011
 Block sizes:   4

 Fragment lengths:
  min:  98
  median:       1858
  avg:  3530.41
  max:  40596

 Fragment length spreading ((max - min) / avg) inside block:
  min:  0
  median:       0.001
  avg:  0.0044
  max:  0.1359

 GC content:
  min:  0.1902
  median:       0.3911
  avg:  0.3841
  max:  0.5291

 Nucleotides in blocks: 5733387
  The percentage of input length:       86.11%
 Total length of blocks:        1437621
  The percentage of total blocks' length:       80.7%


============================
Partial blocks (represented once in subset of genomes):
 fragments:     1044
 blocks:        348
 fragments / blocks:    3
 Block identity:
  min:  0.9797
  median:       1
  avg:  0.9997
  max:  1

 Identity of joined blocks:     0.999908
 Block sizes:   3

 Fragment lengths:
  min:  100
  median:       185
  avg:  492.77
  max:  10923

 Fragment length spreading ((max - min) / avg) inside block:
  min:  0
  median:       0
  avg:  0.0003
  max:  0.0298

 GC content:
  min:  0.1726
  median:       0.3504
  avg:  0.3494
  max:  0.52

 Nucleotides in blocks: 514450
  The percentage of input length:       7.72%
 Total length of blocks:        171495
  The percentage of total blocks' length:       9.62%

============================
Blocks with repeats (at least two copies in at least one genome):
 fragments:     839
 blocks:        125
 fragments / blocks:    6.712
 Block identity:
  min:  0.8714
  median:       0.9295
  avg:  0.9391
  max:  1

 Identity of joined blocks:     0.956793
 Block sizes:
  min:  2
  median:       6
  avg:  6.71
  max:  31

 Fragment lengths:
  min:  83
  median:       139
  avg:  310.05
  max:  3634

 Fragment length spreading ((max - min) / avg) inside block:
  min:  0
  median:       0
  avg:  0.0108
  max:  0.2441

 GC content:
  min:  0.2008
  median:       0.3761
  avg:  0.3764
  max:  0.5335

 Nucleotides in blocks: 260131
  The percentage of input length:       3.9%
 Total length of blocks:        37424
  The percentage of total blocks' length:       2.1%

============================
Unique (blocks of 1 fragment but not minor):
 fragments:     347
 blocks:        347
 Fragment lengths:
  min:  100
  median:       201
  avg:  362.22
  max:  4284

 GC content:
  min:  0.1965
  median:       0.3571
  avg:  0.3579
  max:  0.5774

 Nucleotides in blocks: 125691
  The percentage of input length:       1.88%
 Total length of blocks:        125691
  The percentage of total blocks' length:       7.05%

============================
Minor blocks (too short to say smth about):
 fragments:     662
 blocks:        222
 fragments / blocks:    2.9819
 Block identity:
  min:  0
  median:       1
  avg:  0.8424
  max:  1

 Identity of joined blocks:     0.942707
 Block sizes:
  min:  1
  median:       3
  avg:  2.98
  max:  22

 Fragment lengths:
  min:  1
  median:       26
  avg:  36.56
  max:  99

 Fragment length spreading ((max - min) / avg) inside block:
  min:  0
  median:       0
  avg:  0.0417
  max:  3

 GC content:
  min:  0
  median:       0.3629
  avg:  0.3821
  max:  1

 Nucleotides in blocks: 24204
  The percentage of input length:       0.36%
 Total length of blocks:        9165
  The percentage of total blocks' length:       0.51%

The pangenome has been prepared for the next step: PostProcessing
.. done