1: Proteomics. 2007 Jan;7(1):130-42. An investigation of the effects of endometriosis on the proteome of human eutopic endometrium: a heterogeneous tissue with a complex disease. Fowler PA, Tattum J, Bhattacharya S, Klonisch T, Hombach-Klonisch S, Gazvani R, Lea RG, Miller I, Simpson WG, Cash P. Department of Obstetrics & Gynaecology, University of Aberdeen, Aberdeen, UK. p.a.fowler@abdn.ac.uk The pathogenesis of endometriosis includes the proliferation of heterogeneous endometrial cells and their invasion into ectopic sites within the peritoneal cavity. This may be due to abnormalities of the eutopic endometrium itself, predisposing the cells to survive and implant ectopically. We investigated the applicability of 2-DE gels and peptide mass mapping to identify candidate endometrial proteins with a role in endometriosis. Despite the heterogeneous nature of endometrium, our results show that combining the analysis of 2-DE gels and peptide mass mapping yields consistent data. We identified dysregulated proteins in women with endometriosis which included: (i) molecular chaperones including heat shock protein 90 and annexin A2, (ii) proteins involved in cellular redox state, such as peroxiredoxin 2, (iii) proteins involved in protein and DNA formation/breakdown, including ribonucleoside-diphosphate reductase, prohibitin and prolyl 4-hydroxylase, and (iv) secreted proteins, such as apolipoprotein A1. These proteins have functions which suggest that they could play a role in the pathogenesis of endometriosis. This study demonstrated that 2-DE gel analysis and mass spectroscopic protein identification are suitable for the identification of proteins with candidate associations with endometriosis. These techniques should be used on a larger scale to identify endometriosis-related proteins, thus improving the understanding of this complex disease. PMID: 17124717 [PubMed - in process] Related Links Expression profiling of endometrium from women with endometriosis reveals candidate genes for disease-based implantation failure and infertility. [Endocrinology. 2003] PMID:12810542 Distribution of heat shock proteins in eutopic and ectopic endometrium in endometriosis and adenomyosis. [Fertil Steril. 1997] PMID:9207579 Peritoneal fluid-mediated enhancement of eutopic and ectopic endometrial cell proliferation is dependent on tumor necrosis factor-alpha in women with endometriosis. [Fertil Steril. 2002] PMID:12372447 Use of proteomic analysis of endometriosis to identify different protein expression in patients with endometriosis versus normal controls. [Fertil Steril. 2006] PMID:16750201 Altered expression of interleukin-18 in the ectopic and eutopic endometrium of women with endometriosis. [J Reprod Immunol. 2006] PMID:16963127