LOCUS       NC_014645               2792 bp    DNA     circular VRL 20-JUL-2012
DEFINITION  Ageratum leaf curl Cameroon virus, complete genome.
ACCESSION   NC_014645
VERSION     NC_014645.1  GI:311788801
DBLINK      Project: 60043
KEYWORDS    RefSeq; complete genome.
SOURCE      Ageratum leaf curl Cameroon virus
  ORGANISM  Ageratum leaf curl Cameroon virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1
  AUTHORS   Leke,W.N., Brown,J.K., Ligthart,M.E., Sattar,N., Njualem,D.K. and
            Kvarnheden,A.
  TITLE     Ageratum conyzoides: a host to a unique begomovirus disease complex
            in Cameroon
  JOURNAL   Virus Res. 163 (1), 229-237 (2012)
   PUBMED   22001569
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Nkeabeng Leke,W.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2010) to the INSDC. Nkeabeng Leke W.W., SLU,
            Department of Plant Biology and Forest Genetics, Box 7080, SE-750
            07, SWEDEN
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FR717144.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Ageratum leaf curl Cameroon virus"
                     /mol_type="genomic DNA"
                     /isolate="pBal"
                     /db_xref="taxon:912033"
                     /country="Cameroon"
                     /collected_by="Walter Leke"
                     /identified_by="Walter Leke"
     gene            167..517
                     /gene="V2"
                     /db_xref="GeneID:9923537"
     CDS             167..517
                     /gene="V2"
                     /codon_start=1
                     /product="pre-coat protein"
                     /protein_id="YP_003987450.1"
                     /db_xref="GI:311788802"
                     /db_xref="GOA:E3W7F0"
                     /db_xref="InterPro:IPR002511"
                     /db_xref="InterPro:IPR005159"
                     /db_xref="UniProtKB/TrEMBL:E3W7F0"
                     /db_xref="GeneID:9923537"
                     /translation="MWDPLLNEFPDSVHGFRCMLGIKYLQLLEEEYEPNTLGHDLIRD
                     LISVIRAKNYVEATRRYNNFHARLEGASTSELRQPLYQPCCCPHCPRHKQASFVDVPA
                     HVPKAQNVPDVQNP"
     misc_feature    167..400
                     /gene="V2"
                     /note="Geminivirus V1 protein; Region: Gemini_V1;
                     pfam01524"
                     /db_xref="CDD:279819"
     misc_feature    401..475
                     /gene="V2"
                     /note="WCCH motif; Region: WCCH; pfam03716"
                     /db_xref="CDD:202737"
     gene            327..1097
                     /gene="V1"
                     /db_xref="GeneID:9923536"
     CDS             327..1097
                     /gene="V1"
                     /codon_start=1
                     /product="coat protein"
                     /protein_id="YP_003987451.1"
                     /db_xref="GI:311788803"
                     /db_xref="GOA:E3W7F1"
                     /db_xref="InterPro:IPR000263"
                     /db_xref="InterPro:IPR000650"
                     /db_xref="UniProtKB/TrEMBL:E3W7F1"
                     /db_xref="GeneID:9923536"
                     /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAVVPTVRGISKRRS
                     WTYRPMYRKPRMYRMYRTPDIPRGCEGSCKVQSYEQRDDVKHVGIVRCVSDVTRGSGL
                     THRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPIWQKISWHEFFNSY
                     NEPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQTLVKRFFRVNNHVVYNHQEEAK
                     YANHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
     misc_feature    378..1094
                     /gene="V1"
                     /note="Geminivirus coat protein/nuclear export factor BR1
                     family; Region: Gemini_coat; pfam00844"
                     /db_xref="CDD:279217"
     gene            complement(1094..1498)
                     /gene="REn"
                     /db_xref="GeneID:9923535"
     CDS             complement(1094..1498)
                     /gene="REn"
                     /codon_start=1
                     /product="replication enhancement protein"
                     /protein_id="YP_003987452.1"
                     /db_xref="GI:311788804"
                     /db_xref="GOA:E3W7F2"
                     /db_xref="InterPro:IPR000657"
                     /db_xref="UniProtKB/TrEMBL:E3W7F2"
                     /db_xref="GeneID:9923535"
                     /translation="MDSRTGELITAHQAWNGVFIWEIQNPLYFKITNHDERPFNYQHD
                     IITVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVLKYLDNLGVISI
                     NAIIRAVDHVLYNVLEGTSNVLEAHEIKFNIY"
     misc_feature    complement(1157..1495)
                     /gene="REn"
                     /note="Geminivirus AL3 protein; Region: Gemini_AL3;
                     pfam01407"
                     /db_xref="CDD:279715"
     gene            complement(1239..1646)
                     /gene="TrAP"
                     /db_xref="GeneID:9923532"
     CDS             complement(1239..1646)
                     /gene="TrAP"
                     /codon_start=1
                     /product="transcritional activation protein"
                     /protein_id="YP_003987453.1"
                     /db_xref="GI:311788805"
                     /db_xref="GOA:E3W7F3"
                     /db_xref="InterPro:IPR000942"
                     /db_xref="UniProtKB/TrEMBL:E3W7F3"
                     /db_xref="GeneID:9923532"
                     /translation="MRPSSPSTSHSTQVPIKVQHRIAKQKVVRRKRVDLECGCSYFIH
                     INCSNHGFTHRGTHHCASSLEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNNSTNQVQ
                     PQPAEGVGDSQVFSELQSLDELTPSDWSFLKGI"
     misc_feature    complement(1260..1601)
                     /gene="TrAP"
                     /note="Geminivirus AL2 protein; Region: Gemini_AL2;
                     pfam01440"
                     /db_xref="CDD:279747"
     gene            complement(1555..2634)
                     /gene="Rep"
                     /db_xref="GeneID:9923534"
     CDS             complement(1555..2634)
                     /gene="Rep"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_003987454.1"
                     /db_xref="GI:311788806"
                     /db_xref="GOA:E3W7F4"
                     /db_xref="InterPro:IPR001191"
                     /db_xref="InterPro:IPR001301"
                     /db_xref="InterPro:IPR022690"
                     /db_xref="InterPro:IPR022692"
                     /db_xref="UniProtKB/TrEMBL:E3W7F4"
                     /db_xref="GeneID:9923534"
                     /translation="MPTQRKFLINAKNYFLTFPKCSLSKEEALEQILKLNTPTNKKYI
                     KICRELHENGEPHLHVLMQFEGKYKCQNQRFFDLISPNRSAHFHPNIQGAKSSSDVKS
                     YIDKDGDTLEWGEFQIDARSARGGQQTANDAYAGAINSGSKQEALNILKELAPRDFVY
                     GFHNLNSNLDRIFQAPPEVYISPFLSSSFDQVPEELEEWVSENVCAAAARPWRPISIV
                     IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG
                     AQRDWRSNTKYGKPIQIKGGIPTIFLCNQGPTSSYKEYLEEEKNASLKAWAIKNATFV
                     TLNKPLYSGTDQSAASYREAESSEA"
     misc_feature    complement(2278..2616)
                     /gene="Rep"
                     /note="Geminivirus Rep catalytic domain; Region:
                     Gemini_AL1; pfam00799"
                     /db_xref="CDD:279178"
     misc_feature    complement(1945..2259)
                     /gene="Rep"
                     /note="Geminivirus rep protein central domain; Region:
                     Gemini_AL1_M; pfam08283"
                     /db_xref="CDD:285483"
     gene            complement(2175..2477)
                     /gene="C4"
                     /db_xref="GeneID:9923533"
     CDS             complement(2175..2477)
                     /gene="C4"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="YP_003987455.1"
                     /db_xref="GI:311788807"
                     /db_xref="InterPro:IPR002488"
                     /db_xref="UniProtKB/TrEMBL:E3W7F5"
                     /db_xref="GeneID:9923533"
                     /translation="MANLISMCLCNSKGSTSARISDSSTSYPLTGQHISIRTYRELNP
                     APMSSPTSTRTATPSNGENFKSMQDLQEEANKQPMMLTPEQLTQEVNKRLLIYLRN"
     misc_feature    complement(2229..2477)
                     /gene="C4"
                     /note="Geminivirus C4 protein; Region: Gemini_C4;
                     pfam01492"
                     /db_xref="CDD:279790"
ORIGIN      
        1 accggatggc cgcgattttt tttcccgtac acgctccaaa gtaaaagtaa agtaactagt
       61 ggtccccgcc cactaacaaa tgtcagccaa tcagaatgaa gcctgaaagc tttcttatct
      121 agattttgtc tttatatact tgctcgccaa gtagttttat tgcaacatgt gggacccatt
      181 attgaacgag tttccagact ctgttcatgg ttttcgttgt atgctgggta taaaatatct
      241 gcagctttta gaagaggagt acgagcccaa tactttggga cacgatttaa ttagagatct
      301 catatctgtc attagggcta agaattatgt cgaagcgacc cggcgatata ataatttcca
      361 cgcccgtctc gaaggtgcgt cgacgtctga acttcgacag cccttatacc agccgtgctg
      421 ttgtccccac tgtccgcggc ataagcaagc gtcgttcgtg gacgtaccgg cccatgtacc
      481 gaaagcccag aatgtaccgg atgtacagaa cccctgacat ccctcgtgga tgtgaaggct
      541 catgtaaggt ccagtcgtat gagcagagag atgatgtcaa gcacgtgggt atagttcgtt
      601 gtgttagtga tgtgacccgt gggtccggtc tgactcatag agtagggaag agattttgca
      661 ttaagtctat ttatatttta ggtaaagttt ggatggatga aaacatcaag aagcagaatc
      721 atactaacaa tgttatgttt ttcttagttc gtgatcgtag gcctatatgg cagaagatct
      781 cttggcacga gtttttcaac agttacaacg agcccagtac agctactatc aagaatgatc
      841 tcagagaccg ttatcaagtg ctgcgtaaat tcagtgctac tgttattggt ggtccctctg
      901 gatgcaagga acagactttg gtgaagagat tttttagagt taacaatcat gttgtttata
      961 atcatcagga ggaggctaaa tatgccaacc atactgagaa tgctttgttg ttgtatatgg
     1021 cttgtactca tgcctctaac cctgtgtatg ctactctgaa aatacgcatc tatttctacg
     1081 atgcagttac gaattaataa atattaaatt ttatttcatg tgcttctaat acattgcttg
     1141 taccttcaag tacgttgtac aatacatgat caactgctct aataattgca ttaattgaaa
     1201 ttacacccaa attatctaaa tactttaaca cttgaaccct aaataccctt aagaaacgac
     1261 cagtctgagg gcgtaagctc gtccagactt tgaagttcag aaaacacttg tgaatcccca
     1321 acgccttccg caggttgtgg ttgaacctga tttgtactgt tattatgtcg tgttggtagt
     1381 tgaacggtct ctcgtcgtgg ttggttatct tgaaatacag gggattttgt atctcccaga
     1441 taaaaacgcc attccaagct tgatgcgcag tgatgagttc ccctgtgcgt gaatccatga
     1501 ttactgcagt taatatgtat gaagtatgag cacccgcact ctaagtccac cctcttacgc
     1561 ctcactactt tctgcttcgc gatacgatgc tgcactttga tcggtacctg agtagagtgg
     1621 cttgttgagg gtgacgaagg tcgcattctt aatagcccag gcttttagtg atgcattctt
     1681 ttcctcttcc agatattcct tatatgatga tgtcggtcct tgattgcaga ggaagatagt
     1741 gggaattcca cctttaattt gaatgggctt cccgtacttg gtgttgcttc gccagtctct
     1801 ttgggccccc ataaactctt taaagtgttt tagatagtgg ggatctacgt catcaatgac
     1861 gttataccaa gcatcatttg aatacacctt tgggcttaga tcaagatgac cacacaaata
     1921 gttgtgtgga cctaatgacc tggcccacat ggtcttgcct gttctactat caccctcaat
     1981 aacaatacta atcggtctcc aaggccgcgc agcggcagca cacacgttct cagaaaccca
     2041 ctcttcaagt tcttccggaa cttgatcaaa agaagaagat aaaaaaggag aaatatacac
     2101 ttcaggcgga gcctgaaaaa tcctatctaa attactgttt aaattatgaa aaccataaac
     2161 aaaatctcta ggagctagtt ccttaagtat attaagagcc tcttgtttac ttcctgagtt
     2221 aattgctccg gcgtaagcat cattggctgt ttgttggcct cctcttgcag atcttgcatc
     2281 gatttgaaat tctccccatt cgagggtgtc gccgtccttg tcgatgtagg acttgacatc
     2341 ggagctggat ttagctccct gtatgttcgg atggaaatgt gctgacctgt taggggatat
     2401 gaggtcgaag aatcgctgat tctggcactt gtacttccct tcgaattgca taagcacatg
     2461 gagatgaggt tcgccattct cgtggagttc tctgcaaatt ttaatatatt ttttattggt
     2521 tggggtattt aatttgagta tttgttcgag tgcctcttct ttggatagag agcattttgg
     2581 gaaagtgagg aaataatttt ttgcatttat aagaaatttt cgttgggtag gcatgttggt
     2641 cagaggaccc gattgactct ctattcaatc tttcatatgt atcgggtccc tgggtcctta
     2701 tttatatgtg aggaccttaa tggcattatt gtaattaggt aaaagtaata cgctttaatt
     2761 caaattggta aagcggccat ccgtataata tt
//
