######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:58:01 # Align_format: srspair # Report_file: 1.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml1 # 2: mod1 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1930/2043 (94.5%) # Similarity: 1956/2043 (95.7%) # Gaps: 0/2043 ( 0.0%) # Score: 9328.0 # # #======================================= ml1 1 TTTtcGAaTATaTGttaAgAGaTgCATAAGgcCCGGATTaCAAACgGaAy 50 |||.|||||||.||||||||.|||||||||.|||||||||||||||||| mod1 1 TtTcCGaATatgTGTTaagATATgCaTaaGTCCcGgAtTacAAAcGGaAG 50 ml1 51 GcCGTACGCGsTAcGCTtCaTCAACATcgTGCGCAcTCtGCCCCaCAtCc 100 |||||||||| ||||||.|||||||||||||||||||||||||||||||| mod1 51 gccgTAcGCGaTACGctGCaTcAacATcgTGcGCaCTCtgCCCcacatCc 100 ml1 101 ACACtGAGgACGGAaTCTGcCGTAAGACGAAACTCGcctTCAmGgaGAAT 150 |||||||||||||||||||.||||||||||||||||||||||.||||||| mod1 101 aCActgaGgAcGgAATcTGACGTAagACGaAAcTcgCcTTCAagGAGAaT 150 ml1 151 TTAaCCAGcTAcgakGATyCCAAGGATaCAAGAGTCATTCtgGCATCcCT 200 ||||||.|||||||.|||.||||||||||||||||||||||||||||||| mod1 151 ttAaCcTGCTAcgaTgaTTccAAGgATAcaAGAGTcatTctgGCaTcCcT 200 ml1 201 GCGwACTGGTTGyCCCCcGAACGAGtTGtTACACTATAtGACtAAgATGC 250 ||| ||||||||.||||||||||||.|||||||||||||||||||||||| mod1 201 GCGGACtGgtTGTCCCCcgAaCGagCtgTtACAcTATATgACtAagATgc 250 ml1 251 AACAACAcGaAgtcccACGCGCCGACAtTACCtTTGcCTAGCAATACACT 300 |||||||.|||..|.|||||||||||||||||||||.||||||||||||| mod1 251 aAcaACAGgaACGcgcACgcGCCGAcatTACcTTtgacTaGCaATacAcT 300 ml1 301 ATGCACATCCCagAGGaCcGCCAGTTGTCAGAACcAcTCTgGTCTCGTTG 350 |||||||||||||||||||||||||||||||||||||||||||||||||| mod1 301 aTgcacATcCCagagGaCcGCCagtTgtcAGaacCACTctGGtctcGTTG 350 ml1 351 gAAAGAcCaCAGATTTACTAAGCAACGCAGCagtCCGAAGCGAGgcgTAC 400 |||||||||||||.||||||||||||||||||||||||||||||.||||| mod1 351 gaaaGaCCACAgAAtTACTaAGCaAcgcaGcaGTCcGAAgcGAGTCgTAc 400 ml1 401 CAGATcAaTGACGGtAaCTGGGGCATCgtAgAgttTTATGCAwCCGTTCG 450 ||||||||||||||||||||||||||||||||||||||||||.||||||| mod1 401 cAgATCAaTgACGgTAActGGGgCaTCgtAGAgtTTTaTGcaTcCgTTcg 450 ml1 451 AttGATTAATGCTGGAGTTAAaaCGGCAATAgCTTccAAGTATAaAgCGT 500 ||.|||||||||||||||||||.|||||||||||||.|||||||.||||| mod1 451 ATCGAtTaatGcTGgAGtTaaAGcgGcAATaGCTTcgaagtAtATAgcgT 500 ml1 501 cTCATaACGCGCgcCAtAggGGTACCatgGGGTATCCAGCGtAtCACyAG 550 .|||||||||||||||||..|||||||.|||||||||||||||||||.|| mod1 501 GTcATAACGCGCGCcATaaAGGTACCAgGGgGTatcCAGCgTAtCACCAg 550 ml1 551 TTtCGcaGGtaAcGcGCcTGcCTTAAGGCtrCTcwTTCTTTTaTGgCcAG 600 ||||||.||||||||||.||.|||||||||.|||.||||||||||||||| mod1 551 TtTcGcGggtaaCgcGCTTGtctTAaGGctActCTtTCTTtTATGGcCAG 600 ml1 601 TTCAGAGGaGCGTTTagGAAATcgCCtCGcTAGGCTgTGCrGcATACCCC 650 ||||||||||||||||.|||||||||||||||||||||||.||||||||| mod1 601 TtcagAgGaGCgttTAaGAAatCgCcTcGcTAGGCtgTgCAGCATACCcC 650 ml1 651 GGGgAcGAAgaAAaGGTaGTAGTGGTTCGAATGTGTCCTTGAaCAACCGG 700 |||.||||||.|||||||||||||||||||||||||||||||.||||||| mod1 651 ggGAAcGaaGGAaAGgTaGTagtggttCGaAtGtgTCcTTGaTcAACCgG 700 ml1 701 CtaaCTCCTGAGgtGcCtCTtGTtTGGCTGrTGACCTTCGgGACGAGCcG 750 |||.|||||||||||||.||.||||||||| ||||||||||||||||||| mod1 701 CTATcTCcTGAgGTgccACtGGTTTGGCtGttgaCCttcGGGaCgAgccg 750 ml1 751 CGCAAAGTtCTtTCTGCCTAGAtGGTtTCACCGACTaCCTkACGgGTAGC 800 |||||||||||.||||||||||.|||||||||||||||||.||||||||| mod1 751 CgcaaAGTtCtATCTgCcTAgAAggTTTcaccGaCTACCTTACGgGTAGc 800 ml1 801 CccCAACAAAGtcGaCGACAGTtGGGrgATAGGAGTAATcmmCGTGGatT 850 ||||||||||||||.|||||||||||.|||||||||||||..|||||.|| mod1 801 CCCcaACAaAGtCGGcgacaGTTGGGGGATAGgAgTaaTCAAcgTGGTTt 850 ml1 851 ACCGTCAtTAaGACcCcATggGCGCGaCgtttGGTCTcaTCggTAgCGGG 900 ||||||||||||||||||||||||||||||.||||||||||||||||||| mod1 851 acCgTCaTTaagacCccATGgGcgCGACgtaTGGTCtcatCGgTaGCgGG 900 ml1 901 AAtGCTAaCGTACTaAGGcTyTTTTGGCCTTTCCTCcTGATAGGtCCCTA 950 ||||||||||||||||||||.||||||||||||||||||||||||||||| mod1 901 AAtgCTAacGtAcTAagGCtTttTtggcctTTcCtCctGATaggTCCCTa 950 ml1 951 GGCTAGTGaCAGGTAgAACCCgaCTGTCAACCAatGTGTtGtGGTGtACG 1000 ||||||||||||||||||||||.||||||||||||||||.|.|||||||| mod1 951 GGCTAgTGaCAGgtAGaaccCgGCTgtCAACCAAtGtGtCGGggtGTAcg 1000 ml1 1001 GgCCAAAATtGTcCAAACATcTcGGTatCTTTaTGTGAgCaGAGACTTTT 1050 |.||||||||||||||||||||||||||||||||||||||||||||||.| mod1 1001 gACcaaaATtgTccaaACAtcTcggTaTCtTtatGTGagcAGAGacTtGT 1050 ml1 1051 GATAAGCATTTGtACGcATATAAGrAACAgCaATTcTACATGGAgACACT 1100 ||||||||||||||||||||||||.||||.|||||||||||||||||||| mod1 1051 GATaAGcAttTGTaCGCaTaTaAGGAACACCAATTctAcaTGgAGaCACt 1100 ml1 1101 CtGagCCTGGAaTGAGGaTTGtTAAATCAACCACTCACcTTTTCTTTACG 1150 |||||||||||||||||||||.|||||||||||||.||.|||||||.||| mod1 1101 CtGAGCCTgGaAtgAGGatTGCTaAAtcAAccACTAaCTttTTCttCaCG 1150 ml1 1151 CCGryACTgGCGaTAAGGTAgAAcTGGGGgATAACCTGGAATCcGGACAT 1200 |||..|||||||.||||||||||||||||||||||||||||||||||||| mod1 1151 CCgATaCtgGcgCTaAGgTAGaACTGgGGgAtaaccTGgAAtCcGgACAt 1200 ml1 1201 CCaGACTtTACcAACAAtmGTagTCgTGGCATcCGCgCAGGTGACrTCgC 1250 ||.|||||||||||||||.||||||||||||||||||||||||||.|||| mod1 1201 CCgGActTtaCCaacAATAgtAGtCGTGgcATCcGCgcaGGTGACATCgc 1250 ml1 1251 TGATCCTAAtTAcAACGAaACtGTTaCaTCtgTCGtTTCGGCGACcggTt 1300 |||||||||||||||||||||||||||||||||||||||||||||||||| mod1 1251 TgaTccTAaTTACAacGaaacTGtTacATCtgTcgTtTCGgCGaCCggtT 1300 ml1 1301 GAACGtgwGcaAGGCCGTAAtTTGGAATAGCCTgGTTCGaAaCCAAGACC 1350 ||||||. |||||||||||||||||||.|||||||||||||||||||||| mod1 1301 GAAcgtTGGCAagGcCGTaatttgGAaGagcCTGgTTcgaAaCcaAgAcC 1350 ml1 1351 CtAACsTaCCATGcTCTtAGcGCCgcCGcgGAAaaGGATCGGGGGTTGGG 1400 |||||.|||||||||||||||||||.|||.|||.|||||||||||||||| mod1 1351 ctAAcGTACcATGctCTTAgcGCCGTCGCAGaaCaggAtcGgGggTtggG 1400 ml1 1401 tGCTTATACCaaACCCCTCGArGgGTGCATGAAAGAAaTTTACTCtTaGG 1450 |||||||||||||||||||||.|||||||||||||||||||||||||||| mod1 1401 TGcTTaTACCAaaCCccTcgaAgGGTGcAtgAaAgAaatttActcTTAGg 1450 ml1 1451 GCAtAAaaGAATTtCGCGTGctGATGCcTTTCACAGTaAcGGAAgTTCcT 1500 |||||||.|||||||||||||||||||||||||||||.||||||.||||| mod1 1451 gcatAaaTGAATtTcgcgtgctGaTGCcttTcACAGTCAcGgAaCtTCCT 1500 ml1 1501 GAGCTTaGCGAGcGCgcTACaATarTGTtTAACaCACACGtGCCCTGCAA 1550 ||||||||||||||||||||||||.||||||||||||||||||||||||| mod1 1501 GaGctTAGcgagcGCgcTACAATaAtGTTTAaCacACaCGtgCcctgCAa 1550 ml1 1551 TgccGTrcACCATcAggTTTTGGCCAATGAcaTGTaGCaGATTAACGGGT 1600 ||.|||.||||||||||||||||||||||||||||.||.||||||||||| mod1 1551 tgTCGTAcACcATCAgGtTTtgGCcAaTGACAtgTCGCcgAtTaaCgGgT 1600 ml1 1601 GACTTCAACGcATTAATTATTGGCAtCATTaaGGACgGGGgGAATAGTTt 1650 |||||||||||||||||||||||||.||||||||||||||.||||||||. mod1 1601 GACTtCaAcgcatTAaTTATTggcaGCAtTAagGaCGggGAgAaTAGtTG 1650 ml1 1651 ACACGAGAaCTCAaAGTCTCTaATCCATAGcTTCCTGGTTcCTgGGTggA 1700 |||||||||||||||||||||.|||||||||||||||||||||||||.|| mod1 1651 aCaCGaGaaCTCaaAgTcTctCATCcATAGCtTCcTggTTcCTGGGTaga 1700 ml1 1701 TGCTtaCAaCtAgGaCAGCAGCACcCCTgAaCACGCGCCcAgAGtTaCCC 1750 |||||.||||.||||||||||||||||||||||||||||.|||||||||| mod1 1701 TgCtTTCAACcAggaCaGcaGcaccCCtgAACaCGCGCcGAGAgTTACCc 1750 ml1 1751 TGAAGGGTGCACTGGctGGTAACTTTGaGGTcaAGcAGGGGGCTaACtCG 1800 ||||||||||.||||||||||||||||||||||||||||||||||||||| mod1 1751 tGAAGgGTGcgcTGGCtGGTaacTTTgagGtCAAGCaGggGGctAacTCG 1800 ml1 1801 CTGAAGcgCTTAaAACCGgACcTACGCTGGGaTaAATTCTATyAGTTTCC 1850 ||||||||||||.||||||||||||||||||||||||||||| ||||||| mod1 1801 CTgAAgcgcTtACAAcCgGaCctACGcTgGgATAaaTTcTatgAGtTTCc 1850 ml1 1851 CggtATTCGTgCgAaTTCCccGcAtCaATATAcACCGAGTGATGArCacA 1900 |||||||||||||||||||||||||||||||||||||||||||||.|||| mod1 1851 cggtaTTCgtGCGAATTCCccGCatCAATaTAcaCCgaGtGAtGAAcaca 1900 ml1 1901 tCGTTAtGGACGAtAAccTgtCCgGaGGCATGGtGcGCgTcGGTgTaTTT 1950 |||||||||||||||||||.|||.|.||||||||||||||||||.||||| mod1 1901 TCGTTaTggACgAtaacctCTCCAGCGgCaTGGtgCgcGtcggTaTATTt 1950 ml1 1951 AkAGGCATgGCTCTGcCTCATGtTcCTgACAGGsATgATTTTTtCcTGAT 2000 |.||||||.||||||.|||||||||||.||.||.|||||||||||||||| mod1 1951 ATAggcAtCGCTCtGgcTCATgTTcCtAACgGGGATgatTttttcctgAt 2000 ml1 2001 AgGTAGAGAGGcCgcTTGTCAACCGTctTACCGgGAGAAACGC 2043 |.||||||||||||||||||||||||.|||||||||||||||| mod1 2001 aagTAGAGAGgccgCTTGtCaaccgTAtTaCcGggAgaaACGC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:58:12 # Align_format: srspair # Report_file: 2.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml2 # 2: mod2 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1791/2043 (87.7%) # Similarity: 1849/2043 (90.5%) # Gaps: 0/2043 ( 0.0%) # Score: 8237.0 # # #======================================= ml2 1 wTtccgaaTAtaTgTtaAGccaagcATAAtrctCcGaTTaCrggCGGAcg 50 ||||||||||.|.|||||.||||||||||.|||.|||||| .|||||.| mod2 1 CtTcCGaATatgTcTTaagtcAAgCaTaaTaCtcGgAtTacCAGcgGaAG 50 ml2 51 GCcGTACGtgaaaCGCtkcATCAaCATcGtGygCAytcTGCCcyACATCc 100 |||||||||||||||||.|||||||||||||..||.|.|||||.|||||| mod2 51 gccgTAcGTGaaACGctGCaTcAacATcgTGcaCaCTGtgCCCcacatCc 100 ml2 101 aggCTGAaGaCGGAaTCTrcCGTaAGAtGAaaCTcgccTTCrgggaGAAg 150 ||.|||||||||||||||..|||.|||||||.|||||||||..||||||. mod2 101 agActgaAgAcGgAAtcTgACGTcagATGaACcTcgCcTTCgagGAGaaT 150 ml2 151 TTAatctGcgccGamGAtgCccAGgtTACacggGTcATgCTGtCATCcCT 200 ||||||||||||||.||.|||||||.|||||||||||||||||||||||| mod2 151 ttAatcTgCGccgacgaCgcccAGgAtAcacGgGTcatgctgTCaTcCcT 200 ml2 201 GCGgaCTGGTTgaaCccCgAAcgAGtTgTTrCACtaaaTGcgtaAgaTGc 250 |||||||||||||||.|||||||||.|||| |||||||||||||||.||| mod2 201 GcGGACtGgtTGAaCACcgAaCGagatgTtCCAcTAaATgCgtAagGTgc 250 ml2 251 AACAAaAtgAtgTCcCAcGCkCtGaCATTagCTytGccaAGCAcaACACc 300 |||||.|||||.||.||||| |.||||||||||.||.||||||.|||||. mod2 251 aAcaAGATgatttcgcACgcACCGacatTAgcTTtgacaaGCaTAacAcT 300 ml2 301 AtGCACatccaagaGGaCCcCgAGtTGTCagAACCACTcTgcTctCGtgr 350 |.||||.||..||||||.|.|||||||||||||||||||||||||||||. mod2 301 acgcacGTcGCagagGaGcgcGagttgtcAGaacCACtctGctctcGTGG 350 ml2 351 GAAAGAmyacAGatTTACTtagCAaCgcAGCAGTcctAagcGgGaCGtaC 400 ||||||..|||||||||||.|.|||||||||||||||||||||||||||| mod2 351 gaaagaaTACAgAttTACTaATCaAcgcaGcaGTCcTAAgcGgGACgTAc 400 ml2 401 caGAtcAAkGACGGtaaCTggGtCatCgtagtgtTttAygCacCCGggCg 450 ||||||||.|||||||||||||.||||||||||||||| |||.|||.||| mod2 401 cAgATCAaggACGgTAActGGGgCaTcgtAGTgtTTTaAGcaTcCgTGcg 450 ml2 451 gtaggTaAaTGCcgGaGTtAAAACGcCaAtagcTTCCAaGTctgaAGCgT 500 .||||||||||||||||||||||||||.||||||||.|||||||.||||| mod2 451 ATaGgtaaatGccGgAGtTaaAacgCcgATaGCtTcgaagtctgCAgcgT 500 ml2 501 cTccTAwCGgkCgCCaTAgGgGwtCgAtgGGGgATCcaGCGyatcACgAG 550 .||||| |||.|.|||||.|||.||||.|||||||||||||.|||||||| mod2 501 GTcCTaCCGGGCTCcATaaGGgTtCgAgGGgGGatcCAGCgtAtcACgAg 550 ml2 551 acTCGCaggTaacGcgtctGcCtTAAGtCtcCTccTcgaTTTawcgCccG 600 ..||.|.||||||||.|.||.|||||||||.|||||||||||| |||||| mod2 551 TtTcTcGggtaaCgcAtTTGtctTAaGTctActCctCGATtTACcGcCCG 600 ml2 601 ttCaGcggAgcGTTyaatAAATcGCCtcGcTacgctgcGatGcacacsca 650 .||||.|||||||| |||||||.|||||||||||.||||||||||||.|. mod2 601 AtcagAgGaGCgttAAaTAAatggCcTcgcTAcGgtgcgAtGCACACgcC 650 ml2 651 GGggACgAaGaaaaggcAgTAGtGGTtcgaATatGgCCggGAwcgaCaGG 700 |||.|||||||.|||||||||||||||||||||||.||||||.||||.|| mod2 651 ggGAAcGaaGaGaAGgcaGTagtggttCgaatAtgTCcGgGaTcGACggG 700 ml2 701 CTAwCTCCtGAGgtGcCtCTTgaTTcGCtGtTgacctTCcGtACGcGccG 750 |||.|||||||||.|||.||.||||||||||||||||||||||||||||| mod2 701 CTATcTCcTGAgGcgccActGGATTCGCtGttgaCCttccgTaCgCgccg 750 ml2 751 CgCAaaGTTCTctCTgCCTaGcTGgttgcACcGACTaCcTaamgGGtttC 800 |||||||.|||||||||||||.|||.|.||||||||||.||| ||||||| mod2 751 CgcaaaGatCtcTCTgCcTAgAtggaTTcaccGaCTACATaATGggTttc 800 ml2 801 CtyCAasAaaGTcgaCGACAGgTGrgtgatcGGAGTaAcCttCsaGGAtT 850 ||.|||.|||||||.|||||||||.|||||||||||||.||||.|||.|| mod2 801 CttcaAGaaAGtCGGcgacaGgTGGGTGATcGgAgTaaTcttcgAGgTTt 850 ml2 851 aCcggCgTTAAgACcCcakgGGCgcgaCGttycGtcTcATCGgTAgCGGg 900 ||||||.|||||||.|||.|||||.|||||..||.||||||||||.|||| mod2 851 acCggCaTTaagactccAGGgGcgGGACgtaCcGACtcatCGgTaaCgGG 900 ml2 901 aAtGtTtACGTccTaAGcctgTTTTGgcCTTyCsTcCTgacAGgtgCCtA 950 |||||||||||||||||.|||||||||||||.| |.|||||||||.|||| mod2 901 aAtgtTtacGtccTAagGCtgttTtggcctTccatgctGACaggTCCCTa 950 ml2 951 gtCTaGtcAgccGTAGAaCCCGgCTGTsaayCAataTGtcgcggTGacCG 1000 ||||.||.|||||||||||||||||||..|.|||||||||||||||.||| mod2 951 GtCTTgTGaGCcgtAGaaccCgGCtgtCcAtCAAtatgtCGcggtGTCcg 1000 ml2 1001 GgCCAAAAytgTCcAAgCcTCTCGGcATttttaTgaGAGCaGccAccTgg 1050 |.|||||| |||||||.|||||||||||||||||||.|||||||||.||| mod2 1001 gcCcaaaAatgtccaaCCctcTcggcaTTtTtatGAaagcAGCcacTtGG 1050 ml2 1051 ctTAAgCatTcGTACGcATAaAgGcAAcagcaATtCTggAtGGAGacaCT 1100 ||||||||||.||||||||||||||||...||||||||.|.||||||.|| mod2 1051 ctTaaGcAttTGTacGCaTaAagGcAAAgtCaATTctGcacGgAGaCGCt 1100 ml2 1101 CtGagCgcGgAaTgaGtaTagtTaccTCAAcCAgTaagctTycCTTtAmg 1150 ||||||||||||||.||||||.|||.||||||||||||.||..|||.|.| mod2 1101 ctGAGCgcgGaAtgCGTataGCTaCAtcAAccAgTaagTttCTCttCaCG 1150 ml2 1151 CCGcaAcyGGCGmtAAGGTaaAcctGGggGttaacCtgGaAtCmtGcaaT 1200 |||||||.||||.||.|||.|||||||||||||||||||||||..|.||| mod2 1151 CCgCAaCtgGcgCTatGgttaacCTGgGGgttaaccTGgAAtccGgtaAt 1200 ml2 1201 CCrggCTTTACCAAcAaTcgTwgTcgTGgCAtCcrcgcAgGTgAccccGc 1250 ||.|||||||||||||||.||.||.|||||||||..||||||||||..|| mod2 1201 CCgggctttaCCaacAaTAgtAGtgGTggcATCcGggcaGGTGaCcTGgc 1250 ml2 1251 TGAwCCgaAtaACaAcgaAACTGTTACagcTGkCGcTtcagCGACCGGat 1300 ||| |||||||||.|||||||||||||||.||.||.||||||||||||.| mod2 1251 TgacccgAaTAACGacGaaacTGtTacAGAtgGcgTtTCagCgaCCggtT 1300 ml2 1301 tAAcgTggccaAkcctGTAAtTTGgAAtaGCCTgGtgCGAaaCCAAGAgC 1350 ||||||||||||.||||||||||||||.||||||||.|||||||||||.| mod2 1301 TAAcgtggCCAagccTGTaatttgGAaGagcCTGgTTcgaAaCcaAgAcC 1350 ml2 1351 CtAacacAccAggcTtTtaGctccGycGcGgAawAGGcTccgGGGTTgGg 1400 ||||||.|.||||||||||||||||.|||.||| |||||||||||||||. mod2 1351 ctAAcAgAtcAGGctTTTAgctCCGtCGCTgaaCaggctcCgGggTtggt 1400 ml2 1401 TGCTtAaACcgAAcgCcTCgctGggTGcAtGcaAGAAATTTaCTCTtAGG 1450 ||||.|.||||||..|||||.||||||||||||||||||||||||||||| mod2 1401 TGcTaaTACCgaagCccTcgatgGGTGcAtgcaAgAaatttActcTTAgg 1450 ml2 1451 GCAtcaAaGaATTtCgCGTGcTraTgmcTTtCatAGtaaCGGAaGTgcCT 1500 ||||.||.||||||||||||||.|||.||||||||||.||||||.||||| mod2 1451 gcatGaaGGAATtTcgcgtgctAaTGacttTcAtAGTCAcggAaCtgCCT 1500 ml2 1501 aAGCTtAGCgAgcGCGctgaaacatTGTTtAACAcgcAcgtgcCCTgagA 1550 |||||||||||||||||||.||.|||||||||||||||..|||||||||| mod2 1501 aaGctTAGcgagcGCgcTGGAATattGTtTAaCacgCaTAtgCcctgAga 1550 ml2 1551 tGgcaTccacCAtCaggTtTtggcCaAtGAcAtGaAtCaGaTtAacgGGc 1600 ||||.|.||||||||||||||||||||.|||||||.||.|||.||||||| mod2 1551 tggCTTAcACcATCAgGtTTtgGCcAacGACAtgaCtCcgAtcaaCgGgc 1600 ml2 1601 GAttTCAmcgCAyTaATcatTGGcacyrTtAAGGacgGgGgGaagAgtyt 1650 ||.||||.||||.||||||||||||...|||||||.||||||||.|||.| mod2 1601 GACTtCaccgcatTAaTCATTggcaGTAtTAagGaAGggGggAaTAGtCt 1650 ml2 1651 AaAcGAgAACtmAaAgTCTcTgaTCCatAtCTaCCTGGTTCgTgGGtgGa 1700 ||||||||||| ||||||||||.||||||||||||||||||||||||.|| mod2 1651 aaaCGagaaCTTaaAgTcTctGcTCcATATCtACctggTTcgTGGgTaga 1700 ml2 1701 tGaTtgCAacttGGAmAtCasCACCcCtGaAcActtcCCcarAGTTaCgc 1750 ||||||||||.||||.|||| ||||.|||||||||.|||.|.|||||||| mod2 1701 TgatTGCAACcTggaCaTcatcacctCtgaACaCTAcCcGAaAgTTACGc 1750 ml2 1751 TGaaGGggccgCtgGcTgGtgaCgTTgAGgTCAAscAGGGtGgTmaCTCa 1800 ||.|||||||||||||||||.||||||||.||||.|||||||.|.||||| mod2 1751 tGTAGgGgCcgcTGGCtGGTaacgTTgagAtCAACCaGggtGctAacTCa 1800 ml2 1801 CTGctGCGCtTAaaACyGGACCTasgCkGcGaTAAActCtATgArTaTCC 1850 ||||||||||||||||.|||||||.||.|.|||||||||||||| |.||| mod2 1801 CTgctgcgcTtAaAActgGaCctAgGcTgGgATAaacTcTatgActTTCc 1850 ml2 1851 CggTAtTCGTgcgAAatCCCCGCaTCAaTATACaCcgAtTGctGrtCACa 1900 |||||.|||||||||.||||||||||||||||||||||.||.||..|||| mod2 1851 cggtaCtCgtGcGAAtTCCccGCatcAATaTAcacCgaGtgAtGgAcaca 1900 ml2 1901 tcaTtATGgcCGaTAAcCTgtcckgAGgtATgGTGcGcgTCgGTgTAtTT 1950 |||||||||||||||||||.||| ||||.|||||||||.|||||.||||| mod2 1901 TCaTTatggCCgAtaacctCTCCcGaGgCaTGGtgCgcttcggtaTATTt 1950 ml2 1951 AwAGgcATGGcTctGsCTCcTGtTcCtGACgGGaAtGaTTTTTTcccgAT 2000 |.||||||.|.||||.||||||||||||||||||||||||||||||.||| mod2 1951 AAaggcatCGtTCtGgcTCCTgTTcCtgACggGaATgatTttttcctgAt 2000 ml2 2001 AgGcAgrGagGccgCTkyTCaACCtTctcAcCrGgAgAAacgc 2043 |.||||.||.|||||| .||||||.|.|||.| |||||||||| mod2 2001 aagcAGgGAtgccgCTCctCaaccgTTtCatcTggAgaaACGC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:58:27 # Align_format: srspair # Report_file: 33.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml3 # 2: mod3 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1734/2043 (84.9%) # Similarity: 1808/2043 (88.5%) # Gaps: 0/2043 ( 0.0%) # Score: 7804.0 # # #======================================= ml3 1 aTgccgaaTAtaTgTtaAGccaagcATAAtgctccgaTtaCmggCGgAcg 50 |||||.|||||.|.|||||.||||||||||.|||.|.||||..|||||.| mod3 1 atgcCtaATatgTcTTaagtcAAgCaTaaTaCtcGggtTacCAGcgGaAG 50 ml3 51 GCcgTAcGtgAaACGCtkcATcAacATcGtGmgCAttctGCcgyacATCc 100 |||||||.|||||||||..||||||||||||..||||.|||||.|||||| mod3 51 gccgTAcCTGaaACGctGAaTcAacATcgTGcaCatTGtgCCgcacatCc 100 ml3 101 aGgCTGAaGwCgGaaTCTrtcGTaAgAtgAaaCTcgccTTcmgggaGAAg 150 |||||||||.||||.|||.||||.||||.||.||||||||| .||||||| mod3 101 aggctgaAgTcGgATtcTgtCGTcagATaaACcTcgCcTTCgagGAGaaG 150 ml3 151 TTAatctGcgccGaagAtGcccaGGtTACaccgGTcaTgCTGtcAtCcCT 200 ||||||||||||||.||||||||||.|||||||||||||||||||||||| mod3 151 ttAatcTgCGccgacgaTgcccAGgGtAcaccgGTcatgctgTCaTcCcT 200 ml3 201 GCGgaCTGGTTgaaCccCgaAcsAGtTatTkCACtaAaTGcgtaAgaTGc 250 |||||||||||||||.|||||..||.|.||.||||||.||||||||.||| mod3 201 GcGGACtggtTGAaCACcgAagcagatgTttCAcTaaCTgCgtAaggTgc 250 ml3 251 AaCAAaAtgAtgTCcCacGCtCtGaCAtTaGcTmtgccaAGCAcaACACc 300 |||||||||||.||.|||||.||||||||||||.||.||||||.|||||. mod3 251 aAcaAaAtgatttcgcACgcACTGacatTagcTAtgacaaGCaTAacAcg 300 ml3 301 AtGCACatCCaagaGGacCccgAGtTGTCagAACCACTcTrcTcTcGtgw 350 |.||||.||.|||||||.|.|||||||||..|||||||||.||||||||. mod3 301 acgcacGTcGaagagGaGcgcGagttgtcTTaacCACtctGctctcGTGt 350 ml3 351 GAAAGAmmacAGatTtACTtmgCAackcagcAGTccTAagcGgGaCGtaC 400 ||||||. |||||||||||..|||.|.||||||||||||||||||||.|| mod3 351 gaaagaaTACAgAttTACTaAGCaccgcaGcaGTCcTAAgcGgGACgaAc 400 ml3 401 CaGATmAAgGaCGGtaaCTggGtCatcgtAttgytttAwgCacCCGggCg 450 |||||.||||||||||||||||.||||||||||.||||.|||.|||.||| mod3 401 cAgATCAaggACGgTAActGGGgCaTcgtAtTgtTTTaAGcaTcCgAGcg 450 ml3 451 gtaggTaAaTgCcgGaGTyAAAACGccaAtagcTTCcAaGTCTgwAGCgt 500 .||||||||||||.||||.||.|||||.||||.|||.||||||| ||||. mod3 451 ATaGgtaaatGcccgAGtTaaGacgCcgaTaGGtTcgaagtctgCAgcgC 500 ml3 501 cTcCTAmCGgkCgCcaTAgGgGatcGatgGGGgAtCcaGcGyatcACgAG 550 .|||||.||| |||||||.||||||||.|||||||||||||.|||||||| mod3 501 GTcCTaCCGGcCgCcATaaGGgatCgAgGGgGGatcCAGCgtAtcACgAg 550 ml3 551 acTCGCaggTaacgcgtctGcCTtAAgtCtcCTcCTcgaTTtwacgCscG 600 |.||.|.||||||||.|.||.|||||||||.|||||||||||..|||.|| mod3 551 AtTcTcGggtaaCgcAtTTGtctTAaGTctActCctCGATtTtTcGcCCG 600 ml3 601 ttCaGcggagcGTTyaatAaATsGcCtcGcTacgctgcGatGcacackCa 650 .||||||||||||| |||||||.||||||||||..||||||||||.|.|. mod3 601 CtcagcgGaGCgttAAaTAAatggCcTcgcTAcAgtgcgAtgCACgCgcC 650 ml3 651 GGggACgAagaaaatGcAgTAgtGGTtcgaATatGgCcggGawCgaCagG 700 ||.||||||||.|||||||||||||||||||||||.||||||.|.||.|| mod3 651 ggTgAcGaaGaGaAtgcaGTagtggttCgaatAtgCCcGgGaTcTACggG 700 ml3 701 CTAwCTCCtgAGgtGcCtCTTgaTTcGCtGtTgacatTCcGtACGcgCcg 750 |||.||||.||||.|||.|||||||||||||||||||||||||||||||| mod3 701 CTATctCccGAgGcgccActtGATTCgCtGttgaCattccgTaCgCgccg 750 ml3 751 CgCAaagTTCTctCTgCCTaGcTGGttgcACcgACtrCcTaaagGGttTC 800 |||||||.||||.||||||||.|||.|.|||||||. |.||||||||||| mod3 751 CgcaaaGatCtcCCTgCcTAgAtggaTTcaccGaCCTCATaAAGggTttc 800 ml3 801 CtyCAtgAaaGTcgaCGAcAGgTgmgTgaTcGGAgTaacCtTCraGGAwt 850 ||.||||||||||..|||||||||.|||||||||||||.||||.|||..| mod3 801 CttcaTgaaAGtCtGcgacaGgTGCgTGATcGgAgTaaTcttcgAGgGat 850 ml3 851 accggCgTTAAgACcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||||||.|||||||.|||.|||||.|||||..|||.|||||||||.|||| mod3 851 acCggCaTTaagactccAGGgGcgaGACgtaCcGAttcatCGgTaaCgGG 900 ml3 901 aAtGtTTacGTCCTaAgcctgttTTggcCTTcCsTcCTGacAGgtgCctA 950 ||||||||||||||||||||||||||||||||| |.|||||||||.||.| mod3 901 aAtgtttacGtccTAagcCtgttTtggcctTccatgctGACaggTCCCAa 950 ml3 951 gtCTaGtcagccGTAGAaCCcGgCTGTkwtyCaataTGtcgCggTGacCG 1000 .|||.||.||||||||||||.||||||. ..|||||||||||||||.||| mod3 951 ctCTGgTGagCcgtAGaacctgGCtgttcAtCAAtatgtCGcggtGTCcg 1000 ml3 1001 GgCCAaAActgTCCAAgCCTCTcGGcaTttttatgaGagCaGCcAccTGG 1050 |.||||||.|||||||.|||||||||||||||||.|.|||.|||||.||| mod3 1001 gcCcaaaAatgtccaaCCctcTcggcaTTtttattaaagccGCcacTtGG 1050 ml3 1051 cTTAAgCrtTcGTACGcATAaAgGcAACagcaATtcTggAtgGAGacACT 1100 |||||||.||.||||||||||||||||...||||.|||.|..|||||||| mod3 1051 ctTaaGcAttTGTacGCaTaAagGcAAAgtCaATactGcactgAGaCact 1100 ml3 1101 CtgagCgcGgAaTGaGtaTagtTaccTCAAcCAgTacgtttccCTTtAsg 1150 ||||||||||||||.||||||.|||.||||||||||.|||||||||.|.| mod3 1101 ctGAGCgcgGaAtgCGTataGCTaCAtcAAccAgTaagTttCcCttcagG 1150 ml3 1151 CCGcaAccGgCGatAaGGTaAAcctgGggGtwAgCCtgGaAtCctGcaaT 1200 |||||||.|.||.||.|||.|||.|.|||||.|.||.||.||||||.||| mod3 1151 CCgCAaCtgccgCTatGgttaacaTagGGgttaaccGGgTAtccTgtaat 1200 ml3 1201 CCaGgCTtTACCAAcAaTcgTwrtcgTGgCaTCckcgcAgGTgaccccgc 1250 ||.|||||||||||||||.||. |.|||||||||..||||||||||..|| mod3 1201 CCgggctttaCCaacAaTAgtATtgGTggcATCcGggcaGGTGaCctggc 1250 ml3 1251 TGAmCCGaAtaACaAygaAACTGTTACagcTGsCgcTtcaGCGACCGGat 1300 |||.|||||||||.|.|||||||||||||.||.||||.|||.||||||.| mod3 1251 TgacccgAaTAACGacGaaacTGtTacAGatgGcgctACagtgaCCggtT 1300 ml3 1301 tAAcgTggccaAkcctGTaatTTGgAAtaGCcTsGtgcGawaCCAAGAgC 1350 |||||||||.||.||||||||||||||.|||||.||||||.|||||||.| mod3 1301 TAAcgtggCAAagccTGTaatttgGAaGagcCTGgTgcgaTaCcaAgAcC 1350 ml3 1351 ctAacacAccAggcTtttaGcTccgtcGcGgAarAGGctCcgGGGtTgGg 1400 ||||||.|.|||||||||.||||.|||||.||| ||||||||.||||||. mod3 1351 ctAAcAgAtcAGGctTTTcgctCAGtCGCTgaaCaggctcCgtggTtggt 1400 ml3 1401 TgcTwAaAcgGAacgCcTCgCTgkgTGcAtGcaaGAAAtTTaCTCttAGG 1450 ||||.|.||||||..|||||.||.|||||||||||||||||.|||||||| mod3 1401 TGcTaaTACggaagCccTcgatgGGTGcAtgcaAgAaatttgctcTTAgg 1450 ml3 1451 GcAtcaArGtATTtCgCGTGcTaaTgacTTTCttAGamaCgGAaGTgCcT 1500 ||||.||.||||||||||||||||||||||||.|||..||||||.||||| mod3 1451 gcatGaaGGtATtTcgcgtgctAaTgacttTcAtAGTCAcggAaCtgCCT 1500 ml3 1501 aAGCTgAGCgAgcgCGctgaaacatTGTTtAACACgcAcgtgcCCtgaga 1550 |||||||||||||||||||.|||||||||.||||||||..||.||||||| mod3 1501 aaGctgaGcgagcGCgcTGGAAcattGTtcAaCacgCaTAtgGcctgAga 1550 ml3 1551 tGgcaTcsacCAtCaggTtTtGgmCaAtgAcatGAAtCaGaTtaacGGGc 1600 |||||||.|.||.||||||||||.|.|.||||||||||.|||.||||||| mod3 1551 tggCatccAgcaacAgGtTTtggCcCacGACAtgaatCcgAtcaaCgGgc 1600 ml3 1601 GAttTcamcGCAwtaATcatTGgcacymTgAaGGacgGgGsGaaGagtyt 1650 ||.||||.||||...||||||||||...|||||||..|||.||||..|.| mod3 1601 GACTtCaccgcatcGaTCATTggcaGTAtgAagGaAAggGggAagcCtCt 1650 ml3 1651 AaACGAgaACtaAaAgtcTcTgaTcCatAtctACCTGGTTCgtkGGtgGt 1700 ||||||||||||||||||||||.|.||||||||||||||||||.|||.|. mod3 1651 aaaCGagaaCTaaaagTcTctGcTgcATATCtACctggTTcgTGGgTaga 1700 ml3 1701 tGATtgCAacctGgAaatCakCACCcCtGaAcActtcCccaaAgTTaCgs 1750 |||||||||.|||||.||||.||||.|||||||||||||..||||||||. mod3 1701 TgatTGCAAAcTggaCaTcatcacctCtgaACacTtcCcGTaagTTACGc 1750 ml3 1751 TGaaGGgGccgCtsGcTgGagaCgTTgAGgTCaAkcagGGtGgTwaCTCa 1800 ||..||||||||..|.|||..||||||||.|||| ||.||||.|.||||| mod3 1751 tgTgGgGgCcgcGGGAtGGTaacgTTgagAtCAACCaaggtGctAacTCa 1800 ml3 1801 CTGCtGCGCtTAawaCtgGACCTasgCkgCGaTAAActCtATgAstaTCC 1850 |||||||||||||.||||||||||.||.|||.|||||.|.||||.|.||| mod3 1801 CTgctgcgcTtAaAActgGaCctAgGcTgCgGTAaacgcaatgActtTCc 1850 ml3 1851 CggTatTCGTgcgAAatCcCCGcaTCAaTaTACaCcgAtTgctGrtCACA 1900 |||||||||||||||.|||||||||||||||||||||||||.||..|||| mod3 1851 cggtattCgtGcGAAtTCCccgCatcAATaTAcacCgattgAtGgAcaca 1900 ml3 1901 tcatTATGgcCGatAAcCTgtccggaGgtatgGTgmgcgTCgGtgTAttt 1950 |||||||||||||||||||||.|.||.|.||||||.||.|||||.||||| mod3 1901 TCaTTatggCCgAtaacctGTACcGacgGaTGGtgCgcttcggtaTATTt 1950 ml3 1951 AwAGGmATgGcTctGcctccTGtTcCTGAcgGGAATGATTTTTTcccGAT 2000 ..|||.||.|.||||.||||||||||||||||||||||||||||||.||| mod3 1951 gAaggcatCGtTCtGgcTCCTgTtcCtgACggGaATgatTttttcctgAt 2000 ml3 2001 AgGcAssGatGccgcTkcTCaACCttmtcacCkGGAGaAwcgc 2043 |.|||..||||||||| |||||||.| |||.|.||||||..|| mod3 2001 aagcAcgGAtgccgCTCctCaaccgTTtCatcTggAgaaTtGC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:58:50 # Align_format: srspair # Report_file: 34.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml3 # 2: mod4 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1560/2043 (76.4%) # Similarity: 1628/2043 (79.7%) # Gaps: 0/2043 ( 0.0%) # Score: 6208.0 # # #======================================= ml3 1 aTgccgaaTAtaTgTtaAGccaagcATAAtgctccgaTtaCmggCGgAcg 50 |||||.|.|||...|.|||.||||.|.||...||.|.||||..|||.||. mod4 1 atgcCtactatgacTcaagtcAAgAagaaaattcGggtTacCAgcgcact 50 ml3 51 GCcgTAcGtgAaACGCtkcATcAacATcGtGmgCAttctGCcgyacATCc 100 |||||||||||||||||..||||||.||||....||..|||||.|||||| mod4 51 gccgtacgTGaaACgctGaatcAacCtcgTccatatGGtgCCgcacatcc 100 ml3 101 aGgCTGAaGwCgGaaTCTrtcGTaAgAtgAaaCTcgccTTcmgggaGAAg 150 |||||||.|.||||.|||.||||.||.|.||.||||||||| .||||||. mod4 101 aggctgatgTcGgAgtcTgtCGTcagcTaaACcTcgCcTTCgagGAGaac 150 ml3 151 TTAatctGcgccGaagAtGcccaGGtTACaccgGTcaTgCTGtcAtCcCT 200 ||||||||.|||||.||||||||.|.||||||||||||||||.||||||. mod4 151 ttAatcTgAGccgacgaTgcccacgGtacaccgGtcatgctgaCaTcCcA 200 ml3 201 GCGgaCTGGTTgaaCccCgaAcsAGtTatTkCACtaAaTGcgtaAgaTGc 250 ||.|.||||||.|||.|||||..||.|..|.|||.||.||||||||.||| mod4 201 GcagcCtggtTtAaCAccgAagcagatgAttCAcgaaCtgCgtAaggTgc 250 ml3 251 AaCAAaAtgAtgTCcCacGCtCtGaCAtTaGcTmtgccaAGCAcaACACc 300 |||||||||||.||.||||||.|.||||.||||.||.|||..|.|||||. mod4 251 aAcaAaAtgatttcgcaCgctGtaacatcagctAtgacaactaTAacAcg 300 ml3 301 AtGCACatCCaagaGGacCccgAGtTGTCagAACCACTcTrcTcTcGtgw 350 |.|||||.|.|||||.|||.|||||||||.||||||.|||.||||||... mod4 301 acgcacAgcGaagagaaccgcGagttgtcTgaacCAatctactctcGcct 350 ml3 351 GAAAGAmmacAGatTtACTtmgCAackcagcAGTccTAagcGgGaCGtaC 400 ||||||..|..||||||.|..|.|.|.||||||||||..||||||||.|| mod4 351 gaaagaaCAAggAtttatTaAGaaccgcaGcaGTCcTcTgcGgGACgaAc 400 ml3 401 CaGATmAAgGaCGGtaaCTggGtCatcgtAttgytttAwgCacCCGggCg 450 |||||.|||||||||..|||...||.|||||||.|..|.|||||||..|| mod4 401 cAgATaAaggACGgTCGctGCcgCaccgtAtTgtTAaaTGcaccCgcccg 450 ml3 451 gtaggTaAaTgCcgGaGTyAAAACGccaAtagcTTCcAaGTCTgwAGCgt 500 ..|||||||||||.|.|| ||.|||||.|||.||||.||||||| ||||. mod4 451 AaaGgtaaatGcccgCGtGaaGacgCcgaTaactTcgaagtctgcAgcgc 500 ml3 501 cTcCTAmCGgkCgCcaTAgGgGatcGatgGGGgAtCcaGcGyatcACgAG 550 ..||||.||. ||||.||..|||||||..||||||||||||.|||.|||| mod4 501 GacCTacCgcccgCctTaacGgatCgagTGgGGatcCAGCgtAtcGCgAg 550 ml3 551 acTCGCaggTaacgcgtctGcCTtAAgtCtcCTcCTcgaTTtwacgCscG 600 |.||.|.|||||.||.|....||||||.||.|||||||||||..|||.|. mod4 551 AtTcCccggtaatgcAtgCttctTAaGacttctCctCGATtTtTcGcCCA 600 ml3 601 ttCaGcggagcGTTyaatAaATsGcCtcGcTacgctgcGatGcacackCa 650 ||||||||||.||| |||.|||.|||.||||.||.|||||||||....|. mod4 601 ttcagcgGaGTgttgAaTCAatggCcccgcTgcggtgcgAtgcAAgagcC 650 ml3 651 GGggACgAagaaaatGcAgTAgtGGTtcgaATatGgCcggGawCgaCagG 700 ||.|||.||.|.|||||||.|||||||.||||||||||.|.|.|..|.|| mod4 651 ggTgAcaaataGaatgcagCagtggtttgaatAtggCctgCaTcagCggg 700 ml3 701 CTAwCTCCtgAGgtGcCtCTTgaTTcGCtGtTgacatTCcGtACGcgCcg 750 .||.||||.||||.|||.|||||.|||||.|||||||||||.|||||||| mod4 701 aTaTctCccGAgGcgccActtGAAtcgCttttgaCattccgaacgCgccg 750 ml3 751 CgCAaagTTCTctCTgCCTaGcTGGttgcACcgACtrCcTaaagGGttTC 800 |||||||.||||...||||.|||||.||||||||.|..|.|...|||||| mod4 751 CgcaaaGatCtcCaCgCctggctggaTgcaccGattgGcGacGtggTttc 800 ml3 801 CtyCAtgAaaGTcgaCGAcAGgTgmgTgaTcGGAgTaacCtTCraGGAwt 850 ||.||.||||||...|||||||||.||||||.||||||.||||.|||..| mod4 801 CttcaagaaAGtgtGcgacaGgTgCgTGATcCgAgTaaTcttcgAGgGat 850 ml3 851 accggCgTTAAgACcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||.|||..||||||.|||.|||||.|||||..|.|.|||||||||.|||| mod4 851 acAggCagTaagactccAGGgGcgaGACgtaCcaAttcatcggtaaCgGG 900 ml3 901 aAtGtTTacGTCCTaAgcctgttTTggcCTTcCsTcCTGacAGgtgCctA 950 |||||||||||||..||||||||.||||||||| |.|||||||||..|.| mod4 901 aAtgtttacGtccacagcctgttctggcctTccatgctGACaggTCgCaa 950 ml3 951 gtCTaGtcagccGTAGAaCCcGgCTGTkwtyCaataTGtcgCggTGacCG 1000 .|.|.|..||||||.|||||.|..|||. |.|||||||||.||||||||| mod4 951 cttTGgCGagccgtcGaacctgTAtgttcTtCAAtatgtCacggtGaCcg 1000 ml3 1001 GgCCAaAActgTCCAAgCCTCTcGGcaTttttatgaGagCaGCcAccTGG 1050 |.|||||..||||||||||||.||||||.|||||.|.|||.|.|||.||| mod4 1001 gcCcaaagatgtccaagCctcCcggcaTctttattaaagccGgcacTtGG 1050 ml3 1051 cTTAAgCrtTcGTACGcATAaAgGcAACagcaATtcTggAtgGAGacACT 1100 |||||.|.||.|||||||.|||||||||...|.|.|||.|..||||.||| mod4 1051 ctTaatcatttGTacGCagaAagGcAAcgttacTactGcactgAGaaact 1100 ml3 1101 CtgagCgcGgAaTGaGtaTagtTaccTCAAcCAgTacgtttccCTTtAsg 1150 |||.|||||.|.||.|||||..|||.||||||||||.|||||||||.|.| mod4 1101 ctGGGCgcgcattgCGTatatCTaCGtcAaccAgTaagTttCcCttcagG 1150 ml3 1151 CCGcaAccGgCGatAaGGTaAAcctgGggGtwAgCCtgGaAtCctGcaaT 1200 ..||||..|.|||||.|||.|||.|.|||||.|.|||||..|||||.||| mod4 1151 gtgCAaAtgccgaTatGgttaacaTagGGgttaacctGgcctccTgtaat 1200 ml3 1201 CCaGgCTtTACCAAcAaTcgTwrtcgTGgCaTCckcgcAgGTgaccccgc 1250 .|.|||||||.|||||||.||. |..||||||||..|||||..|||..|| mod4 1201 gCgggctttatcaacAaTAgtATtgaTggcATCctggcaGgCTaCctggc 1250 ml3 1251 TGAmCCGaAtaACaAygaAACTGTTACagcTGsCgcTtcaGCGACCGGat 1300 |||.|||||||.|.|..||||.||.|||..||.||||..||.||.|||.. mod4 1251 tgacccgAaTATCTacAaaaccGtcacAAatgGcgctAaagtgatCggtG 1300 ml3 1301 tAAcgTggccaAkcctGTaatTTGgAAtaGCcTsGtgcGawaCCAAGAgC 1350 .|.||||||.||.||||||||||||.|.||||..||||||.|||||||.. mod4 1301 aAGcgtggCaAagccTGTaatttggtaaagccgGgTgcgaaaCcaAgAcg 1350 ml3 1351 ctAacacAccAggcTtttaGcTccgtcGcGgAarAGGctCcgGGGtTgGg 1400 ||.|||.|.|.|||||||.|||...|||..||| ||||||||.||||||. mod4 1351 ctTAcAgatctGGctTTTcgctaAAtCgatgaaCaggctccgtggTtggt 1400 ml3 1401 TgcTwAaAcgGAacgCcTCgCTgkgTGcAtGcaaGAAAtTTaCTCttAGG 1450 ||||.|.||||||..||.||.||..||||||||||.|||||.||||.||| mod4 1401 TGcTaaTACggaagCccgcgatgGcTGcAtgcaAgcaatttgctcTaAgg 1450 ml3 1451 GcAtcaArGtATTtCgCGTGcTaaTgacTTTCttAGamaCgGAaGTgCcT 1500 |||||||..|.||.||||||||||||||||||.||.. .|||||.||||. mod4 1451 gcatcaaGctgTtccgcgtgctAatgacttTcAtATTgccggAaCtgCCA 1500 ml3 1501 aAGCTgAGCgAgcgCGctgaaacatTGTTtAACACgcAcgtgcCCtgaga 1550 ||.||||.|||||.|||..||||||||||.||.|||.|..||.||||.|| mod4 1501 aaactgaccgagcACgcaTaAAcattGTtcaatacggaTAtgacctggga 1550 ml3 1551 tGgcaTcsacCAtCaggTtTtGgmCaAtgAcatGAAtCaGaTtaacGGGc 1600 |||.|||.|.||.|||||..||| |.|.||..||||||.|||.||||.|| mod4 1551 tggtatccagcaacAgGtgctggTcCacGaagtgaatccgAtcaaCgcgc 1600 ml3 1601 GAttTcamcGCAwtaATcatTGgcacymTgAaGGacgGgGsGaaGagtyt 1650 .||||||.||||...||.|||||||. |||||.|..||..||||..|.| mod4 1601 tAtTtCaccgcatcGaTaATTggcaAgttgaagcaAtggAggaagcctCt 1650 ml3 1651 AaACGAgaACtaAaAgtcTcTgaTcCatAtctACCTGGTTCgtkGGtgGt 1700 |||.||||||||||||||||||.|.|.|||.|||||||..|||.||..|. mod4 1651 aaagGagaaCTaaaagTcTctGcTgcGTATgtaCctggcccgTtGgcaga 1700 ml3 1701 tGATtgCAacctGgAaatCakCACCcCtGaAcActtcCccaaAgTTaCgs 1750 ||||.|||..|.|||||.||.||||.|||||||||||.|..|||||.||. mod4 1701 TgatcGCAtAcGggaaaccatcacctCtgaACacTtcgctTaagTTgCGc 1750 ml3 1751 TGaaGGgGccgCtsGcTgGagaCgTTgAGgTCaAkcagGGtGgTwaCTCa 1800 |||..|.||||||.|.||.|.|||.||||.|||| ||.||||.|.||||| mod4 1751 tgAgTgtgCcgctGGttGTaaacgcTgagAtCAAACaaggtGctAacTCa 1800 ml3 1801 CTGCtGCGCtTAawaCtgGACCTasgCkgCGaTAAActCtATgAstaTCC 1850 |||||||||.|||.||||||||||.|| |||||||||.|.|||..|.||| mod4 1801 CTgctgcgcctAaAActggaCctAggcAgCgaTaaacgcaatgtcttTCc 1850 ml3 1851 CggTatTCGTgcgAAatCcCCGcaTCAaTaTACaCcgAtTgctGrtCACA 1900 ||||||||||.||||.||||||.||||.|||||||||||||.||.||||| mod4 1851 cggtattcgttcGAAtTCCccggatcAgTaTAcacCgattgAtGgtcaca 1900 ml3 1901 tcatTATGgcCGatAAcCTgtccggaGgtatgGTgmgcgTCgGtgTAttt 1950 |||||||||..|.||||||||.|..|.|||||||| ||.|||||.||||| mod4 1901 TCaTTatggGggctaacctgTACccacgtaTGGtgGgcttcggtaTATTt 1950 ml3 1951 AwAGGmATgGcTctGcctccTGtTcCTGAcgGGAATGATTTTTTcccGAT 2000 ..|||.||||.|.||.||||||||||||||||||.||||.||||||.||| mod4 1951 gaaggcatggtTatggcTCcTgTtcctgAcgggaCTgatattttcctgAt 2000 ml3 2001 AgGcAssGatGccgcTkcTCaACCttmtcacCkGGAGaAwcgc 2043 |.||...|||||||.| |||||||.. |||.| ||.|||...| mod4 2001 aagcccgGatgccggtCctCaaccgggtCatcCggtgaaTtaC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:59:48 # Align_format: srspair # Report_file: 3r.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml3 # 2: root # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1287/2043 (63.0%) # Similarity: 1351/2043 (66.1%) # Gaps: 0/2043 ( 0.0%) # Score: 3731.0 # # #======================================= ml3 1 aTgccgaaTAtaTgTtaAGccaagcATAAtgctccgaTtaCmggCGgAcg 50 |||||.|.|||...|.|||.|..|.|.||...||.|.|.|| .|||.||. root 1 atgcctactatgactcaagtcgcgaagaaaattctggtgacgtgcgcact 50 ml3 51 GCcgTAcGtgAaACGCtkcATcAacATcGtGmgCAttctGCcgyacATCc 100 ||||||||..||..||| .|||.||.|||.....||.|||..|.|||||| root 51 gccgtacgctaacggctcaatccacctcggccatatgctggagcacatcc 100 ml3 101 aGgCTGAaGwCgGaaTCTrtcGTaAgAtgAaaCTcgccTTcmgggaGAAg 150 |||||||.|.|.|..||..|....||...|..|.||.|..| .||..||. root 101 aggctgatgtctgggtccgttaccagcgaatgcgcggccacgaggtcaac 150 ml3 151 TTAatctGcgccGaagAtGcccaGGtTACaccgGTcaTgCTGtcAtCcCT 200 ||.|||||||||||.||||||||.|.|||||||.||||||||..|.|.|. root 151 ttcatctgcgccgacgatgcccacggtacaccgatcatgctgaaagctca 200 ml3 201 GCGgaCTGGTTgaaCccCgaAcsAGtTatTkCACtaAaTGcgtaAgaTGc 250 ||.|..||||...||||||.|..||.|..|...|.|||||.||.||..|| root 201 gcagcttggtatcaccccggagcagatgattggcgaaatgagtcaggagc 250 ml3 251 AaCAAaAtgAtgTCcCacGCtCtGaCAtTaGcTmtgccaAGCAcaACACc 300 |.||.|.||||.||.||.|||.|.||||.||||.||.|||..|..||.|. root 251 atcagactgatttcgcaggctttaacatcagctatgacaactatcactcg 300 ml3 301 AtGCACatCCaagaGGacCccgAGtTGTCagAACCACTcTrcTcTcGtgw 350 |.|||||.|.|||||.|||.|.||||||||||||...|||.||||||... root 301 acgcacagcgaagagaaccgccagttgtcagaacttatctactctcgcct 350 ml3 351 GAAAGAmmacAGatTtACTtmgCAackcagcAGTccTAagcGgGaCGtaC 400 ||||||..||.|.||||.|....|.|.||.||...||.|||.|.|||..| root 351 gaaagaaaacggttttattaaaaaccgcaccatctctcagctgtacgatc 400 ml3 401 CaGATmAAgGaCGGtaaCTggGtCatcgtAttgytttAwgCacCCGggCg 450 |.||..||||...||..|||....|.|||.|||....| |||||.|..|| root 401 cggaaaaaggcatgttcctgccggaccgttttgtgaaaggcacctgcccg 450 ml3 451 gtaggTaAaTgCcgGaGTyAAAACGccaAtagcTTCcAaGTCTgwAGCgt 500 ..|.||||||.||.|..|.||.|||.|.|||.||.|.||||||| .|||. root 451 aaatgtaaatccccggatcaatacggcgataactgcgaagtctgcggcgc 500 ml3 501 cTcCTAmCGgkCgCcaTAgGgGatcGatgGGGgAtCcaGcGyatcACgAG 550 ..||||..|. ||.|..|...||||||...|..|||....|..||..|.| root 501 gacctacagcccgactgaactgatcgagccgaaatcggtggtttctggcg 550 ml3 551 acTCGCaggTaacgcgtctGcCTtAAgtCtcCTcCTcgaTTtwacgCscG 600 ...|||.|||||.||||....||.||..||.||.||....|...|.| |. root 551 ctacgccggtaatgcgtgattctgaacacttcttctttgatctgccctct 600 ml3 601 ttCaGcggagcGTTyaatAaATsGcCtcGcTacgctgcGatGcacackCa 650 |||||||.|..||| .|...||.|.|.|||..||.||||.||||....|| root 601 ttcagcgaaatgttgcaggcatggacccgcagcggtgcgttgcaggagca 650 ml3 651 GGggACgAagaaaatGcAgTAgtGGTtcgaATatGgCcggGawCgaCagG 700 ||.|.|.||.|||||||||.|||||||.||||.|||||.|.|.|....|| root 651 ggtggcaaataaaatgcaggagtggtttgaatctggcctgcaacagtggg 700 ml3 701 CTAwCTCCtgAGgtGcCtCTTgaTTcGCtGtTgacatTCcGtACGcgCcg 750 .||.||||.|.|..|||.|||..||||.|.||||.||||||.|||||||| root 701 atatctcccgcgacgccccttacttcggttttgaaattccgaacgcgccg 750 ml3 751 CgCAaagTTCTctCTgCCTaGcTGGttgcACcgACtrCcTaaagGGttTC 800 .|||||..|.|||..|.||.|||||..|||||||.|..|||.|.||.||| root 751 ggcaaatatttctacgtctggctggacgcaccgattggctacatgggttc 800 ml3 801 CtyCAtgAaaGTcgaCGAcAGgTgmgTgaTcGGAgTaacCtTCraGGAwt 850 .|.||.|||..|...|||||.|.|.|....|.|.||||.||||.|.||.| root 801 tttcaagaatctgtgcgacaagcgcggcgacagcgtaagcttcgatgaat 850 ml3 851 accggCgTTAAgACcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||.||....|||||.|||..|.||.|..||..|...|||||||||..|.. root 851 actggaagaaagactccaccgccgagctgtaccacttcatcggtaaagat 900 ml3 901 aAtGtTTacGTCCTaAgcctgttTTggcCTTcCsTcCTGacAGgtgCctA 950 |.|||||||.|||..||||||||.||||||.|| |.|||..|||...|.| root 901 attgtttacttccacagcctgttctggcctgccatgctggaaggcagcaa 950 ml3 951 gtCTaGtcagccGTAGAaCCcGgCTGTkwtyCaataTGtcgCggTGacCG 1000 .|...|..||||||..||||.|..|||. .....|||||..||||||.|| root 951 cttccgcaagccgtccaacctgtttgttcatggctatgtgacggtgaacg 1000 ml3 1001 GgCCAaAActgTCCAAgCCTCTcGGcaTttttatgaGagCaGCcAccTGG 1050 |..||||..||||||||.|||.|||||..|||||.|.|||...||||||| root 1001 gcgcaaagatgtccaagtctcgcggcacctttattaaagccagcacctgg 1050 ml3 1051 cTTAAgCrtTcGTACGcATAaAgGcAACagcaATtcTggAtgGAGacACT 1100 ||.||.|.||...|||||.|.||.|..|...|.|.||..|..|.||.||| root 1051 ctgaatcattttgacgcagacagcctgcgttactactacactgcgaaact 1100 ml3 1101 CtgagCgcGgAaTGaGtaTagtTaccTCAAcCAgTacgtttccCTTtAsg 1150 ||...||||.|.|||..|||...|.|||||||.|.|.|.||.|.||.|.. root 1101 ctcttcgcgcattgatgatatcgatctcaacctggaagatttcgttcagc 1150 ml3 1151 CCGcaAccGgCGatAaGGTaAAcctgGggGtwAgCCtgGaAtCctGcaaT 1200 ..|..|..|.|||||..||.|||...|.|||.|.|||||..|||.|.||| root 1151 gtgtgaatgccgatatcgttaacaaagtggttaacctggcctcccgtaat 1200 ml3 1201 CCaGgCTtTACCAAcAaTcgTwrtcgTGgCaTCckcgcAgGTgaccccgc 1250 .|.|||||||.||||||.|||. |...|||.|.|..|||.|.||.|..|| root 1201 gcgggctttatcaacaagcgttttgacggcgtgctggcaagcgaactggc 1250 ml3 1251 TGAmCCGaAtaACaAygaAACTGTTACagcTGsCgcTtcaGCGACCGGat 1300 |||.|||.|.....|..||||..|.||.|.||.||||..||.||..||.. root 1251 tgacccgcagttgtacaaaaccttcactgatgccgctgaagtgattggtg 1300 ml3 1301 tAAcgTggccaAkcctGTaatTTGgAAtaGCcTsGtgcGawaCCAAGAgC 1350 .|.|||||..||.||...|||||||.|.||||. |.||||.|.||.|... root 1301 aagcgtgggaaagccgtgaatttggtaaagccgtgcgcgaaatcatggcg 1350 ml3 1351 ctAacacAccAggcTtttaGcTccgtcGcGgAarAGGctCcgGGGtTgGg 1400 ||..|..|.|.||||....|||..||||..||| ||||||||.||.|||. root 1351 ctggctgatctggctaaccgctatgtcgatgaacaggctccgtgggtggt 1400 ml3 1401 TgcTwAaAcgGAacgCcTCgCTgkgTGcAtGcaaGAAAtTTaCTCttAGG 1450 .||..||..||||.|||.||.|| ...|.||||.|.|||||.|||...|| root 1401 ggcgaaacaggaaggccgcgatgccgacctgcaggcaatttgctcaatgg 1450 ml3 1451 GcAtcaArGtATTtCgCGTGcTaaTgacTTTCttAGamaCgGAaGTgCcT 1500 ||||||| .|.||.||||||||.|||||||.|.|..| .|||.|.||||. root 1451 gcatcaacctgttccgcgtgctgatgacttacctgaagccggtactgccg 1500 ml3 1501 aAGCTgAGCgAgcgCGctgaaacatTGTTtAACACgcAcgtgcCCtgaga 1550 ||.||||.||||||.||.|||.||||..|.||.|||.|..||.||||.|| root 1501 aaactgaccgagcgtgcagaagcattcctcaatacggaactgacctggga 1550 ml3 1551 tGgcaTcsacCAtCaggTtTtGgmCaAtgAcatGAAtCaGaTtaacGGGc 1600 |||.|||.|.||.|.|.|..||| |.|..|..||||||.|.|.||.|.|| root 1551 tggtatccagcaaccgctgctgggccacaaagtgaatccgttcaaggcgc 1600 ml3 1601 GAttTcamcGCAwtaATcatTGgcacymTgAaGGacgGgGsGaaGagtyt 1650 ..|.|.|.||||...||....||||. |||||.||.||..||||..|.| root 1601 tgtataaccgcatcgatatgaggcaggttgaagcactggtggaagcctct 1650 ml3 1651 AaACGAgaACtaAaAgtcTcTgaTcCatAtctACCTGGTTCgtkGGtgGt 1700 |||..||||.||||||.|.|||...|.....||.||||..||..||..|. root 1651 aaagaagaagtaaaagccgctgccgcgccggtaactggcccgctggcaga 1700 ml3 1701 tGATtgCAacctGgAaatCakCACCcCtGaAcActtcCccaaAgTTaCgs 1750 ||||...|..|.|||||.||.||||..|||..|||||.|.||||||.... root 1701 tgatccgattcaggaaaccatcacctttgacgacttcgctaaagttgacc 1750 ml3 1751 TGaaGGgGccgCtsGcTgGagaCgTTgAGgTCaAkcagGGtGgTwaCTCa 1800 ||...|.|.||||...||.|.|||..|||.|.....|.|||..| ||..| root 1751 tgcgcgtggcgctgattgaaaacgcagagtttgttgaaggttctgacaaa 1800 ml3 1801 CTGCtGCGCtTAawaCtgGACCTasgCkgCGaTAAActCtATgAstaTCC 1850 |||||||||.|.| .|||||.||..||.|.||.||||.|.|||..|...| root 1801 ctgctgcgcctgacgctggatctcggcggtgaaaaacgcaatgtcttctc 1850 ml3 1851 CggTatTCGTgcgAAatCcCCGcaTCAaTaTACaCcgAtTgctGrtCACA 1900 ||||||||||.|....|.||||.|||...|..|||.|||||.|..||||| root 1851 cggtattcgttctgcttacccggatccgcaggcactgattggtcgtcaca 1900 ml3 1901 tcatTATGgcCGatAAcCTgtccggaGgtatgGTgmgcgTCgGtgTAttt 1950 .||||||||..|.|||||||.|...|.|||...||.||.|||||.|.|.| root 1901 ccattatggtggctaacctggcaccacgtaaaatgcgcttcggtatctct 1950 ml3 1951 AwAGGmATgGcTctGcctccTGtTcCTGAcgGGAATGATTTTTTcccGAT 2000 ..|||.||||...||.||.|.|.|||||.||||||.|||.||||||.|.| root 1951 gaaggcatggtgatggctgccggtcctggcgggaaagatattttcctgct 2000 ml3 2001 AgGcAssGatGccgcTkcTCaACCttmtcacCkGGAGaAwcgc 2043 |.||...|||||||.|.||.||||.. |||.| ||.|||.... root 2001 aagcccggatgccggtgctaaaccgggtcatcaggtgaaataa 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:59:11 # Align_format: srspair # Report_file: 43.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml4 # 2: mod3 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1677/2043 (82.1%) # Similarity: 1808/2043 (88.5%) # Gaps: 0/2043 ( 0.0%) # Score: 7576.0 # # #======================================= ml4 1 aTgcckaaTAtaTgTtaAGycaagcATAAtgctccgmTtaCmggcGgAsr 50 |||||.|||||.|.|||||.||||||||||.|||.| ||||..||||| . mod3 1 atgcCtaATatgTcTTaagtcAAgCaTaaTaCtcGggtTacCAGcgGaAG 50 ml4 51 GCcgTAcgtgAaaCGCttmATcAacATcGtGagCAttctGCcgyacATcc 100 |||||||.|||||||||..||||||||||||..||||.|||||.|||||| mod3 51 gccgTAcCTGaaACGctGAaTcAacATcgTGcaCatTGtgCCgcacatCc 100 ml4 101 aGgCTGAaGtCgGaaTCTatcGTaAgAtgAaaCTcgccTTcygggaGaAg 150 ||||||||||||||.|||.||||.||||.||.||||||||| .||||||| mod3 101 aggctgaAgTcGgATtcTgtCGTcagATaaACcTcgCcTTCgagGAGaaG 150 ml4 151 TTAayctGcgctGaagAtGcccaGGtTACrccgGtcaTgCTGtcAtCmCT 200 ||||.||||||.||.||||||||||.|||.|||||||||||||||||.|| mod3 151 ttAatcTgCGccgacgaTgcccAGgGtAcaccgGTcatgctgTCaTcCcT 200 ml4 201 GcGgwCTGGTTsraCcmCgaAccAgtTatTkCACtaAwTGcgtaAgaTGc 250 ||||.||||||..||..||||.|||.|.||.|||||| ||||||||.||| mod3 201 GcGGACtggtTGAaCACcgAagcagatgTttCAcTaaCTgCgtAaggTgc 250 ml4 251 AacAAaAtgAtgtCsCacGCtCtGacatTaGcTmtgccaAGCAyaACACs 300 |||||||||||.||.|||||.||||||||||||.||.||||||.|||||. mod3 251 aAcaAaAtgatttcgcACgcACTGacatTagcTAtgacaaGCaTAacAcg 300 ml4 301 atGCACatCCaagaGGacCccgAGtTgTcmkAACCACTcTacTcTcGtgw 350 |.||||.||.|||||||.|.||||||||| .|||||||||.||||||||. mod3 301 acgcacGTcGaagagGaGcgcGagttgtcTTaacCACtctGctctcGTGt 350 ml4 351 GAAAGarmacAGatTtaCttcgCAactcagcAGTmcTAagcGgGaCGwaC 400 ||||||. |||||||||||..|||.|.|||||||.||||||||||||.|| mod3 351 gaaagaaTACAgAttTACTaAGCaccgcaGcaGTCcTAAgcGgGACgaAc 400 ml4 401 CmGAtmAAggaCGGtaaCTgggtCrtcgtattgctkkAagCacCCGggCg 450 |.|||.||||||||||||||||.|.||||||||.|..|||||.|||.||| mod3 401 cAgATCAaggACGgTAActGGGgCaTcgtAtTgtTTTaAGcaTcCgAGcg 450 ml4 451 kyaggTrAaTgccsGaGtwAAAACGccaAtagcTTCcAaGTCTgtAGCgt 500 .||||.||||||.||||.||.|||||.||||.|||.|||||||.||||. mod3 451 ATaGgtaaatGcccgAGtTaaGacgCcgaTaGGtTcgaagtctgCAgcgC 500 ml4 501 cTcCTAcCGgwCgCcaTAkGgGatcGatgGGGgAtCcaGcGywtcACgAG 550 .||||||||| ||||||| ||||||||.|||||||||||||..||||||| mod3 501 GTcCTaCCGGcCgCcATaaGGgatCgAgGGgGGatcCAGCgtAtcACgAg 550 ml4 551 acTCGCrgkTagcgmgtcyGcCTtAAgtCtcCTyCTcgaTTtmaygCmcG 600 |.||.|.|.||.||..|..|.|||||||||.||.|||||||| ..||.|| mod3 551 AtTcTcGggtaaCgcAtTTGtctTAaGTctActCctCGATtTtTcGcCCG 600 ml4 601 wtCagcggagcGTTyagtaaATgGcCtcgcTacgctgcgatGcwcackCa 650 ||||||||||||| |.||||||||||||||||..||||||||.|.|.|. mod3 601 CtcagcgGaGCgttAAaTAAatggCcTcgcTAcAgtgcgAtgCACgCgcC 650 ml4 651 GGggACgAwgaaaatGcAgTAgwGGTtcgaATatGsCcggGatCraCrgG 700 ||.|||||.||.||||||||||.||||||||||||.|||||||| ||.|| mod3 651 ggTgAcGaaGaGaAtgcaGTagtggttCgaatAtgCCcGgGaTcTACggG 700 ml4 701 CTAaCTCCygAGrygcCtCTtgatTcGCtGyTgacattCcGtAcGcgCsg 750 |||.||||.|||..|||.||||||||||||.|||||||||||||||||.| mod3 701 CTATctCccGAgGcgccActtGATTCgCtGttgaCattccgTaCgCgccg 750 ml4 751 CgCAaagTTCTcyCtgCCTaGcTGGtwgyACcgActgCcTaaagGGttTC 800 |||||||.||||.||||||||.|||....||||||..|.||||||||||| mod3 751 CgcaaaGatCtcCCTgCcTAgAtggaTTcaccGaCCTCATaAAGggTttc 800 ml4 801 cttCAtgAaaGTcgmCGAcAGgTgmgTgwTcGGAgTaacCtTCkaGGAat 850 |||||||||||||. |||||||||.|||.|||||||||.||||.|||.|| mod3 801 CttcaTgaaAGtCtGcgacaGgTGCgTGATcGgAgTaaTcttcgAGgGat 850 ml4 851 accggCgTTAAgaCcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||||||.|||||||.|||.|||||.|||||..|||.|||||||||.|||| mod3 851 acCggCaTTaagactccAGGgGcgaGACgtaCcGAttcatCGgTaaCgGG 900 ml4 901 aatGkTTacGtCCTaAgcttgttTTggcCTTcCyTsCTGacAGgtgCctA 950 ||||.|||||||||||||.|||||||||||||| |.|||||||||.||.| mod3 901 aAtgtttacGtccTAagcCtgttTtggcctTccatgctGACaggTCCCAa 950 ml4 951 gtCTaGtyagccGTAGamCCcGgCTGTktttCaataTgtcgCrsTGwsCG 1000 .|||.|| |||||||||.||.||||||...||||||||||||..||..|| mod3 951 ctCTGgTGagCcgtAGaacctgGCtgttcAtCAAtatgtCGcggtGTCcg 1000 ml4 1001 GgCcAaAactgTCCAAgCCTCTcGGcaTtttyatkrGagCaGCcAccTGG 1050 |.||||||.|||||||.||||||||||||||.||...|||.|||||.||| mod3 1001 gcCcaaaAatgtccaaCCctcTcggcaTTtttattaaagccGCcacTtGG 1050 ml4 1051 cTTAAgCmwTsgTACGyATAaAgGyAACakcaaTwcTrgAtgGAGamaCT 1100 |||||||..| |||||.|||||||.||...||||.||..|..||||.||| mod3 1051 ctTaaGcAttTGTacGCaTaAagGcAAAgtCaATactGcactgAGaCact 1100 ml4 1101 CtgagCgcGgAaTGaGtaTastTmycTCAAcCAgTacgtttccCTttags 1150 ||||||||||||||.|||||..|...||||||||||.|||||||||.||. mod3 1101 ctGAGCgcgGaAtgCGTataGCTaCAtcAAccAgTaagTttCcCttcagG 1150 ml4 1151 CCGcaAccGgCGrtaaGGTwAAcctgGraGtaAgCCkgGwAtCctGcamT 1200 |||||||.|.|| ||.|||.|||.|.|..||.|.||.||.||||||.|.| mod3 1151 CCgCAaCtgccgCTatGgttaacaTagGGgttaaccGGgTAtccTgtaat 1200 ml4 1201 CCaGgCTtTACCAAcAaTcgTratcgTGgCatCctcgcAgGtgaccscgy 1250 ||.|||||||||||||||.||..|.|||||||||..|||||||||| .|. mod3 1201 CCgggctttaCCaacAaTAgtATtgGTggcATCcGggcaGGTGaCctggc 1250 ml4 1251 TGAmCCGmAyaACaAtgaAACTGTTACagcTGsCgcTwcaGcGACcGGat 1300 |||.|||.|.|||.|.|||||||||||||.||.||||.|||.||||||.| mod3 1251 TgacccgAaTAACGacGaaacTGtTacAGatgGcgctACagtgaCCggtT 1300 ml4 1301 tAAcgTggmyaArcctGTaattTGgAAtaGCcTsGwgcgataCCAAGagC 1350 ||||||||. ||.||||||||||||||.|||||.|.||||||||||||.| mod3 1301 TAAcgtggCAAagccTGTaatttgGAaGagcCTGgTgcgaTaCcaAgAcC 1350 ml4 1351 ctAacamAycAggcTtttaGcTccgtyGcGgAarAGGytCcgGGGtTgGg 1400 |||||| |.|||||||||.||||.||.||.||| |||.||||.||||||. mod3 1351 ctAAcAgAtcAGGctTTTcgctCAGtCGCTgaaCaggctcCgtggTtggt 1400 ml4 1401 TgcTaAmAcgGAacgCcTCgCTgtgTGcAtGcaaGAAAtTTgCTCttAGg 1450 |||||| ||||||..|||||.||.|||||||||||||||||||||||||| mod3 1401 TGcTaaTACggaagCccTcgatgGGTGcAtgcaAgAaatttgctcTTAgg 1450 ml4 1451 gcAtcaAgGtATTtCgCGTGcTaaTaacTTTCttAGacaCgGAaGTgCcT 1500 ||||.||||||||||||||||||||.||||||.|||.|||||||.||||| mod3 1451 gcatGaaGGtATtTcgcgtgctAaTgacttTcAtAGTCAcggAaCtgCCT 1500 ml4 1501 mAGcTgAGCgakcgCGctgragcatTGTTcAAcACgcAcrtgsCCtgaga 1550 .||||||||||.|||||||.|.||||||||||||||||..||.||||||| mod3 1501 aaGctgaGcgagcGCgcTGGAAcattGTtcAaCacgCaTAtgGcctgAga 1550 ml4 1551 tGscaTcsasCAtCaggTtttGracaAtgacatGAAtCwGaTtaacGGGc 1600 ||.||||.|.||.|||||||||..|.|.|||||||||| |||.||||||| mod3 1551 tggCatccAgcaacAgGtTTtggCcCacGACAtgaatCcgAtcaaCgGgc 1600 ml4 1601 GAttTcaycGCAataATcatTGgcactyTgAaGGacgGggcGaaGagwct 1650 ||.||||.||||...||||||||||.| |||||||..|||.||||...|| mod3 1601 GACTtCaccgcatcGaTCATTggcaGTAtgAagGaAAggGggAagcCtCt 1650 ml4 1651 AaACGagaACtaAaAatcTcTgaTcCatAtctACCTGGTTCgttgGtgGt 1700 |||||||||||||||.||||||.|.||||||||||||||||||.|||.|. mod3 1651 aaaCGagaaCTaaaagTcTctGcTgcATATCtACctggTTcgTGGgTaga 1700 ml4 1701 tGATtgCAamctGgAaatCmtCACCcCtGaAsActtcCccaaagTTaCgs 1750 |||||||||.|||||.|||.|||||.|||||.|||||||..||||||||. mod3 1701 TgatTGCAAAcTggaCaTcatcacctCtgaACacTtcCcGTaagTTACGc 1750 ml4 1751 TgawGGgGccgCtcGmTgGagaCgTTgAGgTCaAtcagGGtGgTtgCTCa 1800 ||. ||||||||..|.|||..||||||||.||||.||.||||.|..|||| mod3 1751 tgTgGgGgCcgcGGGAtGGTaacgTTgagAtCAACCaaggtGctAacTCa 1800 ml4 1801 CTGCtGCGCtTAataCtgGACCTaygCsgCGaTAAAytCwaTgAstaTCC 1850 |||||||||||||.|||||||||| || |||.||||..|.||||.|.||| mod3 1801 CTgctgcgcTtAaAActgGaCctAgGcTgCgGTAaacgcaatgActtTCc 1850 ml4 1851 CggTattCGTgcgAAatCcCCGcaTCAaTaTACwCcgAtTgcyGryCACA 1900 |||||||||||||||.|||||||||||||||||.|||||||..|. |||| mod3 1851 cggtattCgtGcGAAtTCCccgCatcAATaTAcacCgattgAtGgAcaca 1900 ml4 1901 tcatTATGgyCGmtAAcCTgtccggaGgtatggTgagcgTCaGtgTAttt 1950 |||||||||.||.||||||||.|.||.|.||||||.||.||.||.||||| mod3 1901 TCaTTatggCCgAtaacctGTACcGacgGaTGGtgCgcttcggtaTATTt 1950 ml4 1951 atAGGaATgGyTctGyctccTGtTcCtGAcgGGAATGaTTtTTTcccGAT 2000 ..|||.||.|.|||| ||||||||||||||||||||||||||||||.||| mod3 1951 gAaggcatCGtTCtGgcTCCTgTtcCtgACggGaATgatTttttcctgAt 2000 ml4 2001 AgGcAcsGatGccgcTycTCaACCttmtcayCyGGAGaAtcac 2043 |.||||.|||||||||.|||||||.| |||.|.|||||||..| mod3 2001 aagcAcgGAtgccgCTCctCaaccgTTtCatcTggAgaaTtGC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 03:59:33 # Align_format: srspair # Report_file: 44.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml4 # 2: mod4 # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1507/2043 (73.8%) # Similarity: 1632/2043 (79.9%) # Gaps: 0/2043 ( 0.0%) # Score: 6016.0 # # #======================================= ml4 1 aTgcckaaTAtaTgTtaAGycaagcATAAtgctccgmTtaCmggcGgAsr 50 |||||.|.|||...|.|||.||||.|.||...||.| ||||..|||.|. mod4 1 atgcCtactatgacTcaagtcAAgAagaaaattcGggtTacCAgcgcact 50 ml4 51 GCcgTAcgtgAaaCGCttmATcAacATcGtGagCAttctGCcgyacATcc 100 |||||||||||||||||..||||||.||||....||..|||||.|||||| mod4 51 gccgtacgTGaaACgctGaatcAacCtcgTccatatGGtgCCgcacatcc 100 ml4 101 aGgCTGAaGtCgGaaTCTatcGTaAgAtgAaaCTcgccTTcygggaGaAg 150 |||||||.||||||.|||.||||.||.|.||.||||||||| .||||||. mod4 101 aggctgatgTcGgAgtcTgtCGTcagcTaaACcTcgCcTTCgagGAGaac 150 ml4 151 TTAayctGcgctGaagAtGcccaGGtTACrccgGtcaTgCTGtcAtCmCT 200 ||||.|||.||.||.||||||||.|.|||.||||||||||||.||||.|. mod4 151 ttAatcTgAGccgacgaTgcccacgGtacaccgGtcatgctgaCaTcCcA 200 ml4 201 GcGgwCTGGTTsraCcmCgaAccAgtTatTkCACtaAwTGcgtaAgaTGc 250 ||.| |||||| .||..||||.|||.|..|.|||.|| ||||||||.||| mod4 201 GcagcCtggtTtAaCAccgAagcagatgAttCAcgaaCtgCgtAaggTgc 250 ml4 251 AacAAaAtgAtgtCsCacGCtCtGacatTaGcTmtgccaAGCAyaACACs 300 |||||||||||.||.||||||.|.||||.||||.||.|||..|.|||||. mod4 251 aAcaAaAtgatttcgcaCgctGtaacatcagctAtgacaactaTAacAcg 300 ml4 301 atGCACatCCaagaGGacCccgAGtTgTcmkAACCACTcTacTcTcGtgw 350 |.|||||.|.|||||.|||.||||||||| .|||||.||||||||||... mod4 301 acgcacAgcGaagagaaccgcGagttgtcTgaacCAatctactctcGcct 350 ml4 351 GAAAGarmacAGatTtaCttcgCAactcagcAGTmcTAagcGgGaCGwaC 400 ||||||..|..||||||.|..|.|.|.|||||||.||..||||||||.|| mod4 351 gaaagaaCAAggAtttatTaAGaaccgcaGcaGTCcTcTgcGgGACgaAc 400 ml4 401 CmGAtmAAggaCGGtaaCTgggtCrtcgtattgctkkAagCacCCGggCg 450 |.|||.|||||||||..|||...|..|||||||.| |.|||||||..|| mod4 401 cAgATaAaggACGgTCGctGCcgCaccgtAtTgtTAaaTGcaccCgcccg 450 ml4 451 kyaggTrAaTgccsGaGtwAAAACGccaAtagcTTCcAaGTCTgtAGCgt 500 ||||.||||||.|.|| ||.|||||.|||.||||.|||||||.||||. mod4 451 AaaGgtaaatGcccgCGtGaaGacgCcgaTaactTcgaagtctgcAgcgc 500 ml4 501 cTcCTAcCGgwCgCcaTAkGgGatcGatgGGGgAtCcaGcGywtcACgAG 550 ..|||||||. ||||.|| .|||||||..||||||||||||..||.|||| mod4 501 GacCTacCgcccgCctTaacGgatCgagTGgGGatcCAGCgtAtcGCgAg 550 ml4 551 acTCGCrgkTagcgmgtcyGcCTtAAgtCtcCTyCTcgaTTtmaygCmcG 600 |.||.| |.||..|..|....||||||.||.||.|||||||| ..||.|. mod4 551 AtTcCccggtaatgcAtgCttctTAaGacttctCctCGATtTtTcGcCCA 600 ml4 601 wtCagcggagcGTTyagtaaATgGcCtcgcTacgctgcgatGcwcackCa 650 .|||||||||.||| |.|.|||||||.||||.||.||||||||.....|. mod4 601 ttcagcgGaGTgttgAaTCAatggCcccgcTgcggtgcgAtgcAAgagcC 650 ml4 651 GGggACgAwgaaaatGcAgTAgwGGTtcgaATatGsCcggGatCraCrgG 700 ||.|||.|..|.|||||||.||.||||.|||||||.||.|.|||..|.|| mod4 651 ggTgAcaaataGaatgcagCagtggtttgaatAtggCctgCaTcagCggg 700 ml4 701 CTAaCTCCygAGrygcCtCTtgatTcGCtGyTgacattCcGtAcGcgCsg 750 .||.||||.|||..|||.|||||.|||||..||||||||||.||||||.| mod4 701 aTaTctCccGAgGcgccActtGAAtcgCttttgaCattccgaacgCgccg 750 ml4 751 CgCAaagTTCTcyCtgCCTaGcTGGtwgyACcgActgCcTaaagGGttTC 800 |||||||.||||...||||.|||||..|.|||||.||.|.|...|||||| mod4 751 CgcaaaGatCtcCaCgCctggctggaTgcaccGattgGcGacGtggTttc 800 ml4 801 cttCAtgAaaGTcgmCGAcAGgTgmgTgwTcGGAgTaacCtTCkaGGAat 850 |||||.||||||.. |||||||||.|||.||.||||||.||||.|||.|| mod4 801 CttcaagaaAGtgtGcgacaGgTgCgTGATcCgAgTaaTcttcgAGgGat 850 ml4 851 accggCgTTAAgaCcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||.|||..||||||.|||.|||||.|||||..|.|.|||||||||.|||| mod4 851 acAggCagTaagactccAGGgGcgaGACgtaCcaAttcatcggtaaCgGG 900 ml4 901 aatGkTTacGtCCTaAgcttgttTTggcCTTcCyTsCTGacAGgtgCctA 950 ||||.||||||||..|||.||||.||||||||| |.|||||||||..|.| mod4 901 aAtgtttacGtccacagcctgttctggcctTccatgctGACaggTCgCaa 950 ml4 951 gtCTaGtyagccGTAGamCCcGgCTGTktttCaataTgtcgCrsTGwsCG 1000 .|.|.|. ||||||.||.||.|..|||..|||||||||||.|..||..|| mod4 951 cttTGgCGagccgtcGaacctgTAtgttcTtCAAtatgtCacggtGaCcg 1000 ml4 1001 GgCcAaAactgTCCAAgCCTCTcGGcaTtttyatkrGagCaGCcAccTGG 1050 |.|||||..||||||||||||.||||||.||.||...|||.|.|||.||| mod4 1001 gcCcaaagatgtccaagCctcCcggcaTctttattaaagccGgcacTtGG 1050 ml4 1051 cTTAAgCmwTsgTACGyATAaAgGyAACakcaaTwcTrgAtgGAGamaCT 1100 |||||.|..| |||||.|.|||||.|||...|.|.||..|..||||.||| mod4 1051 ctTaatcatttGTacGCagaAagGcAAcgttacTactGcactgAGaaact 1100 ml4 1101 CtgagCgcGgAaTGaGtaTastTmycTCAAcCAgTacgtttccCTttags 1150 |||.|||||.|.||.||||| .|...||||||||||.|||||||||.||. mod4 1101 ctGGGCgcgcattgCGTatatCTaCGtcAaccAgTaagTttCcCttcagG 1150 ml4 1151 CCGcaAccGgCGrtaaGGTwAAcctgGraGtaAgCCkgGwAtCctGcamT 1200 ..||||..|.||.||.|||.|||.|.|..||.|.||.|| .|||||.|.| mod4 1151 gtgCAaAtgccgaTatGgttaacaTagGGgttaacctGgcctccTgtaat 1200 ml4 1201 CCaGgCTtTACCAAcAaTcgTratcgTGgCatCctcgcAgGtgaccscgy 1250 .|.|||||||.|||||||.||..|..|||||||||.|||||..||| .|. mod4 1201 gCgggctttatcaacAaTAgtATtgaTggcATCctggcaGgCTaCctggc 1250 ml4 1251 TGAmCCGmAyaACaAtgaAACTGTTACagcTGsCgcTwcaGcGACcGGat 1300 |||.|||.|.|.|.|..||||.||.|||..||.||||..||.||.|||.. mod4 1251 tgacccgAaTATCTacAaaaccGtcacAAatgGcgctAaagtgatCggtG 1300 ml4 1301 tAAcgTggmyaArcctGTaattTGgAAtaGCcTsGwgcgataCCAAGagC 1350 .|.|||||. ||.||||||||||||.|.||||..|.||||.|||||||.. mod4 1301 aAGcgtggCaAagccTGTaatttggtaaagccgGgTgcgaaaCcaAgAcg 1350 ml4 1351 ctAacamAycAggcTtttaGcTccgtyGcGgAarAGGytCcgGGGtTgGg 1400 ||.||| |.|.|||||||.|||...|.|..||| |||.||||.||||||. mod4 1351 ctTAcAgatctGGctTTTcgctaAAtCgatgaaCaggctccgtggTtggt 1400 ml4 1401 TgcTaAmAcgGAacgCcTCgCTgtgTGcAtGcaaGAAAtTTgCTCttAGg 1450 |||||| ||||||..||.||.||..||||||||||.||||||||||.||| mod4 1401 TGcTaaTACggaagCccgcgatgGcTGcAtgcaAgcaatttgctcTaAgg 1450 ml4 1451 gcAtcaAgGtATTtCgCGTGcTaaTaacTTTCttAGacaCgGAaGTgCcT 1500 ||||||||.|.||.|||||||||||.||||||.||....|||||.||||. mod4 1451 gcatcaaGctgTtccgcgtgctAatgacttTcAtATTgccggAaCtgCCA 1500 ml4 1501 mAGcTgAGCgakcgCGctgragcatTGTTcAAcACgcAcrtgsCCtgaga 1550 .|.||||.|||.|.|||...|.||||||||||.|||.|..|| ||||.|| mod4 1501 aaactgaccgagcACgcaTaAAcattGTtcaatacggaTAtgacctggga 1550 ml4 1551 tGscaTcsasCAtCaggTtttGracaAtgacatGAAtCwGaTtaacGGGc 1600 ||..|||.|.||.|||||..||..|.|.||..|||||| |||.||||.|| mod4 1551 tggtatccagcaacAgGtgctggTcCacGaagtgaatccgAtcaaCgcgc 1600 ml4 1601 GAttTcaycGCAataATcatTGgcactyTgAaGGacgGggcGaaGagwct 1650 .||||||.||||...||.|||||||...|||||.|..||..||||...|| mod4 1601 tAtTtCaccgcatcGaTaATTggcaAgttgaagcaAtggAggaagcctCt 1650 ml4 1651 AaACGagaACtaAaAatcTcTgaTcCatAtctACCTGGTTCgttgGtgGt 1700 |||.|||||||||||.||||||.|.|.|||.|||||||..||||||..|. mod4 1651 aaagGagaaCTaaaagTcTctGcTgcGTATgtaCctggcccgTtGgcaga 1700 ml4 1701 tGATtgCAamctGgAaatCmtCACCcCtGaAsActtcCccaaagTTaCgs 1750 ||||.|||..|.|||||.|.|||||.|||||.|||||.|..|||||.||. mod4 1701 TgatcGCAtAcGggaaaccatcacctCtgaACacTtcgctTaagTTgCGc 1750 ml4 1751 TgawGGgGccgCtcGmTgGagaCgTTgAGgTCaAtcagGGtGgTtgCTCa 1800 ||| .|.||||||.| ||.|.|||.||||.||||.||.||||.|..|||| mod4 1751 tgAgTgtgCcgctGGttGTaaacgcTgagAtCAAACaaggtGctAacTCa 1800 ml4 1801 CTGCtGCGCtTAataCtgGACCTaygCsgCGaTAAAytCwaTgAstaTCC 1850 |||||||||.|||.|||||||||| || ||||||||..|.|||..|.||| mod4 1801 CTgctgcgcctAaAActggaCctAggcAgCgaTaaacgcaatgtcttTCc 1850 ml4 1851 CggTattCGTgcgAAatCcCCGcaTCAaTaTACwCcgAtTgcyGryCACA 1900 ||||||||||.||||.||||||.||||.|||||.|||||||..|..|||| mod4 1851 cggtattcgttcGAAtTCCccggatcAgTaTAcacCgattgAtGgtcaca 1900 ml4 1901 tcatTATGgyCGmtAAcCTgtccggaGgtatggTgagcgTCaGtgTAttt 1950 ||||||||| .|.||||||||.|..|.||||||||.||.||.||.||||| mod4 1901 TCaTTatggGggctaacctgTACccacgtaTGGtgGgcttcggtaTATTt 1950 ml4 1951 atAGGaATgGyTctGyctccTGtTcCtGAcgGGAATGaTTtTTTcccGAT 2000 ..|||.||||.|.|| ||||||||||||||||||.||||.||||||.||| mod4 1951 gaaggcatggtTatggcTCcTgTtcctgAcgggaCTgatattttcctgAt 2000 ml4 2001 AgGcAcsGatGccgcTycTCaACCttmtcayCyGGAGaAtcac 2043 |.||.|.|||||||.|.|||||||.. |||.|.||.||||.|| mod4 2001 aagcccgGatgccggtCctCaaccgggtCatcCggtgaaTtaC 2043 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Sat Dec 17 2005 04:00:01 # Align_format: srspair # Report_file: 4r.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: ml4 # 2: root # Matrix: EDNAFULL # Gap_penalty: 100.0 # Extend_penalty: 10.0 # # Length: 2043 # Identity: 1249/2043 (61.1%) # Similarity: 1358/2043 (66.5%) # Gaps: 0/2043 ( 0.0%) # Score: 3614.0 # # #======================================= ml4 1 aTgcckaaTAtaTgTtaAGycaagcATAAtgctccgmTtaCmggcGgAsr 50 |||||.|.|||...|.|||.|..|.|.||...||.| |.|| .|||.|. root 1 atgcctactatgactcaagtcgcgaagaaaattctggtgacgtgcgcact 50 ml4 51 GCcgTAcgtgAaaCGCttmATcAacATcGtGagCAttctGCcgyacATcc 100 ||||||||..||..|||..|||.||.|||.....||.|||..|.|||||| root 51 gccgtacgctaacggctcaatccacctcggccatatgctggagcacatcc 100 ml4 101 aGgCTGAaGtCgGaaTCTatcGTaAgAtgAaaCTcgccTTcygggaGaAg 150 |||||||.|||.|..||..|....||...|..|.||.|..| .||..||. root 101 aggctgatgtctgggtccgttaccagcgaatgcgcggccacgaggtcaac 150 ml4 151 TTAayctGcgctGaagAtGcccaGGtTACrccgGtcaTgCTGtcAtCmCT 200 ||.|.||||||.||.||||||||.|.|||.|||.||||||||..|.| |. root 151 ttcatctgcgccgacgatgcccacggtacaccgatcatgctgaaagctca 200 ml4 201 GcGgwCTGGTTsraCcmCgaAccAgtTatTkCACtaAwTGcgtaAgaTGc 250 ||.| .||||. |||.||.|.|||.|..|...|.||.||.||.||..|| root 201 gcagcttggtatcaccccggagcagatgattggcgaaatgagtcaggagc 250 ml4 251 AacAAaAtgAtgtCsCacGCtCtGacatTaGcTmtgccaAGCAyaACACs 300 |.||.|.||||.||.||.|||.|.||||.||||.||.|||..|..||.|. root 251 atcagactgatttcgcaggctttaacatcagctatgacaactatcactcg 300 ml4 301 atGCACatCCaagaGGacCccgAGtTgTcmkAACCACTcTacTcTcGtgw 350 |.|||||.|.|||||.|||.|.|||||||..|||...||||||||||... root 301 acgcacagcgaagagaaccgccagttgtcagaacttatctactctcgcct 350 ml4 351 GAAAGarmacAGatTtaCttcgCAactcagcAGTmcTAagcGgGaCGwaC 400 ||||||..||.|.||||.|....|.|.||.||.. ||.|||.|.|||..| root 351 gaaagaaaacggttttattaaaaaccgcaccatctctcagctgtacgatc 400 ml4 401 CmGAtmAAggaCGGtaaCTgggtCrtcgtattgctkkAagCacCCGggCg 450 | ||..||||...||..|||......|||.|||.. |.|||||.|..|| root 401 cggaaaaaggcatgttcctgccggaccgttttgtgaaaggcacctgcccg 450 ml4 451 kyaggTrAaTgccsGaGtwAAAACGccaAtagcTTCcAaGTCTgtAGCgt 500 |.||.|||.||.|..| ||.|||.|.|||.||.|.|||||||..|||. root 451 aaatgtaaatccccggatcaatacggcgataactgcgaagtctgcggcgc 500 ml4 501 cTcCTAcCGgwCgCcaTAkGgGatcGatgGGGgAtCcaGcGywtcACgAG 550 ..|||||.|. ||.|..| ..||||||...|..|||....|..||..|.| root 501 gacctacagcccgactgaactgatcgagccgaaatcggtggtttctggcg 550 ml4 551 acTCGCrgkTagcgmgtcyGcCTtAAgtCtcCTyCTcgaTTtmaygCmcG 600 ...||| |.||..|.||. ..||.||..||.||.||....|. ...| |. root 551 ctacgccggtaatgcgtgattctgaacacttcttctttgatctgccctct 600 ml4 601 wtCagcggagcGTTyagtaaATgGcCtcgcTacgctgcgatGcwcackCa 650 .||||||.|..||| .....||||.|.|||..||.||||.|||.....|| root 601 ttcagcgaaatgttgcaggcatggacccgcagcggtgcgttgcaggagca 650 ml4 651 GGggACgAwgaaaatGcAgTAgwGGTtcgaATatGsCcggGatCraCrgG 700 ||.|.|.|..|||||||||.||.||||.||||.||.||.|.|.|....|| root 651 ggtggcaaataaaatgcaggagtggtttgaatctggcctgcaacagtggg 700 ml4 701 CTAaCTCCygAGrygcCtCTtgatTcGCtGyTgacattCcGtAcGcgCsg 750 .||.||||.|.|..|||.|||..||||.|..|||.||||||.||||||.| root 701 atatctcccgcgacgccccttacttcggttttgaaattccgaacgcgccg 750 ml4 751 CgCAaagTTCTcyCtgCCTaGcTGGtwgyACcgActgCcTaaagGGttTC 800 .|||||..|.||...|.||.|||||. |.|||||.||.|||.|.||.||| root 751 ggcaaatatttctacgtctggctggacgcaccgattggctacatgggttc 800 ml4 801 cttCAtgAaaGTcgmCGAcAGgTgmgTgwTcGGAgTaacCtTCkaGGAat 850 .||||.|||..|.. |||||.|.|.|.. .|.|.||||.||||.|.|||| root 801 tttcaagaatctgtgcgacaagcgcggcgacagcgtaagcttcgatgaat 850 ml4 851 accggCgTTAAgaCcCcasgGGCGcgaCGttycGacTcATCGgTAgCGGg 900 ||.||....|||||.|||..|.||.|..||..|...|||||||||..|.. root 851 actggaagaaagactccaccgccgagctgtaccacttcatcggtaaagat 900 ml4 901 aatGkTTacGtCCTaAgcttgttTTggcCTTcCyTsCTGacAGgtgCctA 950 |.||.||||.|||..|||.||||.||||||.|| |.|||..|||...|.| root 901 attgtttacttccacagcctgttctggcctgccatgctggaaggcagcaa 950 ml4 951 gtCTaGtyagccGTAGamCCcGgCTGTktttCaataTgtcgCrsTGwsCG 1000 .|...|. ||||||..|.||.|..|||...|...|||||..|..||. || root 951 cttccgcaagccgtccaacctgtttgttcatggctatgtgacggtgaacg 1000 ml4 1001 GgCcAaAactgTCCAAgCCTCTcGGcaTtttyatkrGagCaGCcAccTGG 1050 |..||||..||||||||.|||.|||||..||.||...|||...||||||| root 1001 gcgcaaagatgtccaagtctcgcggcacctttattaaagccagcacctgg 1050 ml4 1051 cTTAAgCmwTsgTACGyATAaAgGyAACakcaaTwcTrgAtgGAGamaCT 1100 ||.||.|..| ..|||.|.|.||....|...|.|.||..|..|.||.||| root 1051 ctgaatcattttgacgcagacagcctgcgttactactacactgcgaaact 1100 ml4 1101 CtgagCgcGgAaTGaGtaTastTmycTCAAcCAgTacgtttccCTttags 1150 ||...||||.|.|||..||| ....|||||||.|.|.|.||.|.||.||. root 1101 ctcttcgcgcattgatgatatcgatctcaacctggaagatttcgttcagc 1150 ml4 1151 CCGcaAccGgCGrtaaGGTwAAcctgGraGtaAgCCkgGwAtCctGcamT 1200 ..|..|..|.||.||..||.|||...| .||.|.||.|| .|||.|.|.| root 1151 gtgtgaatgccgatatcgttaacaaagtggttaacctggcctcccgtaat 1200 ml4 1201 CCaGgCTtTACCAAcAaTcgTratcgTGgCatCctcgcAgGtgaccscgy 1250 .|.|||||||.||||||.||| .|...|||.|.||.|||.|.||.| .|. root 1201 gcgggctttatcaacaagcgttttgacggcgtgctggcaagcgaactggc 1250 ml4 1251 TGAmCCGmAyaACaAtgaAACTGTTACagcTGsCgcTwcaGcGACcGGat 1300 |||.|||.| ....|..||||..|.||.|.||.|||| .||.||..||.. root 1251 tgacccgcagttgtacaaaaccttcactgatgccgctgaagtgattggtg 1300 ml4 1301 tAAcgTggmyaArcctGTaattTGgAAtaGCcTsGwgcgataCCAAGagC 1350 .|.||||| ||.||...|||||||.|.||||. | ||||.|.||.|... root 1301 aagcgtgggaaagccgtgaatttggtaaagccgtgcgcgaaatcatggcg 1350 ml4 1351 ctAacamAycAggcTtttaGcTccgtyGcGgAarAGGytCcgGGGtTgGg 1400 ||..|. |.|.||||....|||..||.|..||| |||.||||.||.|||. root 1351 ctggctgatctggctaaccgctatgtcgatgaacaggctccgtgggtggt 1400 ml4 1401 TgcTaAmAcgGAacgCcTCgCTgtgTGcAtGcaaGAAAtTTgCTCttAGg 1450 .||.||...||||.|||.||.||....|.||||.|.|||||||||...|| root 1401 ggcgaaacaggaaggccgcgatgccgacctgcaggcaatttgctcaatgg 1450 ml4 1451 gcAtcaAgGtATTtCgCGTGcTaaTaacTTTCttAGacaCgGAaGTgCcT 1500 |||||||..|.||.||||||||.||.||||.|.|..|..|||.|.||||. root 1451 gcatcaacctgttccgcgtgctgatgacttacctgaagccggtactgccg 1500 ml4 1501 mAGcTgAGCgakcgCGctgragcatTGTTcAAcACgcAcrtgsCCtgaga 1550 .|.||||.|||.||.||.|.||||||..||||.|||.|. || ||||.|| root 1501 aaactgaccgagcgtgcagaagcattcctcaatacggaactgacctggga 1550 ml4 1551 tGscaTcsasCAtCaggTtttGracaAtgacatGAAtCwGaTtaacGGGc 1600 ||..|||.|.||.|.|.|..||..|.|..|..|||||| |.|.||.|.|| root 1551 tggtatccagcaaccgctgctgggccacaaagtgaatccgttcaaggcgc 1600 ml4 1601 GAttTcaycGCAataATcatTGgcactyTgAaGGacgGggcGaaGagwct 1650 ..|.|.|.||||...||....||||...|||||.||.||..||||...|| root 1601 tgtataaccgcatcgatatgaggcaggttgaagcactggtggaagcctct 1650 ml4 1651 AaACGagaACtaAaAatcTcTgaTcCatAtctACCTGGTTCgttgGtgGt 1700 |||..||||.|||||..|.|||...|.....||.||||..||.|||..|. root 1651 aaagaagaagtaaaagccgctgccgcgccggtaactggcccgctggcaga 1700 ml4 1701 tGATtgCAamctGgAaatCmtCACCcCtGaAsActtcCccaaagTTaCgs 1750 ||||...|. |.|||||.|.|||||..|||..|||||.|.||||||.... root 1701 tgatccgattcaggaaaccatcacctttgacgacttcgctaaagttgacc 1750 ml4 1751 TgawGGgGccgCtcGmTgGagaCgTTgAGgTCaAtcagGGtGgTtgCTCa 1800 ||. .|.|.||||.. ||.|.|||..|||.|...|.|.|||..|..|..| root 1751 tgcgcgtggcgctgattgaaaacgcagagtttgttgaaggttctgacaaa 1800 ml4 1801 CTGCtGCGCtTAataCtgGACCTaygCsgCGaTAAAytCwaTgAstaTCC 1850 |||||||||.|.|..|||||.||. ||.|.||.|||..|.|||..|...| root 1801 ctgctgcgcctgacgctggatctcggcggtgaaaaacgcaatgtcttctc 1850 ml4 1851 CggTattCGTgcgAAatCcCCGcaTCAaTaTACwCcgAtTgcyGryCACA 1900 ||||||||||.|....|.||||.|||...|..|.|.|||||.....|||| root 1851 cggtattcgttctgcttacccggatccgcaggcactgattggtcgtcaca 1900 ml4 1901 tcatTATGgyCGmtAAcCTgtccggaGgtatggTgagcgTCaGtgTAttt 1950 .||||||||..|.|||||||.|...|.|||...||.||.||.||.|.|.| root 1901 ccattatggtggctaacctggcaccacgtaaaatgcgcttcggtatctct 1950 ml4 1951 atAGGaATgGyTctGyctccTGtTcCtGAcgGGAATGaTTtTTTcccGAT 2000 ..|||.||||...|| ||.|.|.|||||.||||||.|||.||||||.|.| root 1951 gaaggcatggtgatggctgccggtcctggcgggaaagatattttcctgct 2000 ml4 2001 AgGcAcsGatGccgcTycTCaACCttmtcayCyGGAGaAtcac 2043 |.||.|.|||||||.| ||.||||.. |||.| ||.|||..|. root 2001 aagcccggatgccggtgctaaaccgggtcatcaggtgaaataa 2043 #--------------------------------------- #---------------------------------------