######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAA_METJA # 2: GUAA_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 193 # Identity: 60/193 (31.1%) # Similarity: 94/193 (48.7%) # Gaps: 14/193 ( 7.3%) # Score: 255.0 # # #======================================= GUAAA_METJA 1 VILDNGGQYVHRIHRSLKYIGVSSKI-VPNTTPLEEIESNKEVKGIILSG 49 :|||.|.||...:.|.::.:||..:: ..:.|..:..:.|. .|||||| GUAA_ECOLI 1 LILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNP--SGIILSG 48 GUAAA_METJA 50 GPDI---EKAKNCIDIALNAKLPILGICLGHQLIALAYGGEVGRAEAEEY 96 ||:. |.:.........|.:|:.|:|.|.|.:|:..||.|..:...|: GUAA_ECOLI 49 GPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREF 98 GUAAA_METJA 97 ALTKVYVDKENDLFKNVPREFNA--------WASHKDEVKKVPEGFEILA 138 ...:|.|..::.|.:.:.....| |.||.|:|..:|..|..:| GUAA_ECOLI 99 GYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVA 148 GUAAA_METJA 139 HSDICQVEAMKHKTKPIYGVQFHPEVAHTEYGNEILKNFCKVC 181 .::.|....|.::.|..|||||||||.||..|..:|:.|.:.. GUAA_ECOLI 149 STESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDI 191 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAA_METJA # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 184 # Identity: 68/184 (37.0%) # Similarity: 100/184 (54.3%) # Gaps: 5/184 ( 2.7%) # Score: 266.5 # # #======================================= GUAAA_METJA 1 VILDNGGQYVHRIHRSLKYIGVSSKIVPNTTPLEEIESNKEVKGIILSGG 50 ||||.|.||...|.|.::.:.|.|:|.|..||...|: .:..:.||:||| GUAA_HUMAN 1 VILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIK-EQGFRAIIISGG 49 GUAAA_METJA 51 PDIEKAKNC--IDIAL-NAKLPILGICLGHQLIALAYGGEVGRAEAEEYA 97 |:...|::. .|.|: ....|:||||.|.|::...:||.|.:....|.. GUAA_HUMAN 50 PNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDG 99 GUAAA_METJA 98 LTKVYVDKENDLFKNVPREFNAWASHKDEVKKVPEGFEILAHSDICQVEA 147 :..:.||....||:.:.:|.....:|.|.|.||.:||:::|.|... |.. GUAA_HUMAN 100 VFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGNI-VAG 148 GUAAA_METJA 148 MKHKTKPIYGVQFHPEVAHTEYGNEILKNFCKVC 181 :.:::|.:||.||||||..||.|..|||||.... GUAA_HUMAN 149 IANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 182 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAA_ECOLI # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 191 # Identity: 73/191 (38.2%) # Similarity: 103/191 (53.9%) # Gaps: 9/191 ( 4.7%) # Score: 313.5 # # #======================================= GUAA_ECOLI 1 LILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGP 50 :|||.|:||.:::.||||||.|..|::..:.....|::.....||:|||| GUAA_HUMAN 1 VILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGP 50 GUAA_ECOLI 51 ESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGY 100 .|...|::|.....:|..|.||.|:|||||.|....||.|...:.||.|. GUAA_HUMAN 51 NSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGV 100 GUAA_ECOLI 101 AQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAST 150 ..:.|.|..:|.||::.... |.::|||.|..:...|..||.: GUAA_HUMAN 101 FNISVDNTCSLFRGLQKEEV--------VLLTHGDSVDKVADGFKVVARS 142 GUAA_ECOLI 151 ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDI 191 .:. .|.:|||.|:.||.||||||..|..|..:|:.|:.|| GUAA_HUMAN 143 GNI-VAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 182 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAB_METJA # 2: GUAA_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 23 # Identity: 15/23 (65.2%) # Similarity: 18/23 (78.3%) # Gaps: 0/23 ( 0.0%) # Score: 73.0 # # #======================================= GUAAB_METJA 1 RKAIIALSGGVDSSVAAVLTHKA 23 .|.|:.|||||||||.|:|.|:| GUAA_ECOLI 1 DKVILGLSGGVDSSVTAMLLHRA 23 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAB_METJA # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 35 # Identity: 11/35 (31.4%) # Similarity: 16/35 (45.7%) # Gaps: 13/35 (37.1%) # Score: 58.0 # # #======================================= GUAAB_METJA 1 RKAIIALSGGVDSSVAAVLTHKA------------ 23 |.::.|||||||:|...|.::| GUAA_HUMAN 1 -KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHID 34 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAA_ECOLI # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 35 # Identity: 14/35 (40.0%) # Similarity: 18/35 (51.4%) # Gaps: 13/35 (37.1%) # Score: 63.0 # # #======================================= GUAA_ECOLI 1 DKVILGLSGGVDSSVTAMLLHRA------------ 23 ||::.|||||||:|...||:|| GUAA_HUMAN 1 -KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHID 34 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAB_METJA # 2: GUAA_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 93 # Identity: 45/93 (48.4%) # Similarity: 68/93 (73.1%) # Gaps: 0/93 ( 0.0%) # Score: 239.0 # # #======================================= GUAAB_METJA 1 EEEVKKANLDKDLWQYFAVVLDCKATGVKGDEREYNWIVALRMVKSLDAM 50 .||::||:|...:.|.|.|.|..::.||.||.|:|:|:|:||.|:::|.| GUAA_ECOLI 1 IEELRKADLYDKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFM 50 GUAAB_METJA 51 TAHVPEIPFDLLKRISKRITSEIPNVARVVFDITDKPPATIEF 93 |||...:|:|.|.|:|.||.:|:..::|||:||:.|||||||: GUAA_ECOLI 51 TAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW 93 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAAB_METJA # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 203 # Identity: 33/203 (16.3%) # Similarity: 56/203 (27.6%) # Gaps: 112/203 (55.2%) # Score: 79.0 # # #======================================= GUAAB_METJA 1 EEEVKKANLDKDLWQYFAVVLDCKATGVKGDEREYNWI------------ 38 ||:.:|......|....|.:|..|..||:||.|.|::: GUAA_HUMAN 1 EEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWE 50 GUAAB_METJA 39 -------------------------------------------------- 38 GUAA_HUMAN 51 SLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQA 100 GUAAB_METJA 39 -------------------------------------------VALRMVK 45 |.:|... GUAA_HUMAN 101 DFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFI 150 GUAAB_METJA 46 SLDAMTAHVP-----EIPFDLLKRISKRITSEIPNVARVVFDITDKPPAT 90 :.|.||. :| |||.:::.::...| .:||.::|:::|:|.|||.| GUAA_HUMAN 151 TSDFMTG-IPATPGNEIPVEVVLKMVTEI-KKIPGISRIMYDLTSKPPGT 198 GUAAB_METJA 91 IEF 93 .|: GUAA_HUMAN 199 TEW 201 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Tue Mar 14 2006 03:08:04 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: GUAA_ECOLI # 2: GUAA_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 215 # Identity: 32/215 (14.9%) # Similarity: 49/215 (22.8%) # Gaps: 136/215 (63.3%) # Score: 98.0 # # #======================================= GUAA_ECOLI 1 -------------------------------------------------- 0 GUAA_HUMAN 1 EEDQEKLMQITSLHSLNAFLLPIKTVGVQGDCRSYSYVCGISSKDEPDWE 50 GUAA_ECOLI 1 -------------------------------------------IEELRKA 7 :..||:| GUAA_HUMAN 51 SLIFLARLIPRMCHNVNRVVYIFGPPVKEPPTDVTPTFLTTGVLSTLRQA 100 GUAA_ECOLI 8 DL-----------YDKVSQAFTVFLPV--------------RSVGVMGDG 32 |. ..|:||...:..|: || GUAA_HUMAN 101 DFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRS------- 143 GUAA_ECOLI 33 RKYDWVVSLRAVETIDFMTAHWA----HLPYDFLGRVSNRIINEVNGISR 78 |.:|...|.||||...| .:|.:.:.::... |.::.|||| GUAA_HUMAN 144 ------VVIRTFITSDFMTGIPATPGNEIPVEVVLKMVTE-IKKIPGISR 186 GUAA_ECOLI 79 VVYDISGKPPATIEW 93 ::||::.|||.|.|| GUAA_HUMAN 187 IMYDLTSKPPGTTEW 201 #--------------------------------------- #---------------------------------------