RID: Y9UN53DE016 Job Title:POLN_CHIK3 Q5XXP4 Polyprotein P1234 (P1234) Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POLN_CHIK3 Q5XXP4 Polyprotein P1234 (P1234) (Non-structural polyprotein) (> Query ID: lcl|Query_3989399 Length: 611 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 1268 1268 100% 0.0 100.00 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 1234 1234 100% 0.0 96.56 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 1181 1181 100% 0.0 91.33 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 1179 1179 100% 0.0 90.83 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 1177 1177 100% 0.0 90.83 2513 O90368.1 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 1021 1021 100% 0.0 79.38 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1019 1019 100% 0.0 78.72 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1018 1018 100% 0.0 79.05 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1008 1008 100% 0.0 77.91 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1006 1006 100% 0.0 77.74 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 1004 1004 100% 0.0 78.72 2437 Q8QZ73.3 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 980 980 100% 0.0 76.35 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 926 926 100% 0.0 73.49 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 925 925 100% 0.0 73.36 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 920 920 100% 0.0 73.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 902 902 100% 0.0 72.92 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 901 901 100% 0.0 73.36 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 899 899 100% 0.0 72.86 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 898 898 100% 0.0 74.01 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 897 897 100% 0.0 73.03 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 896 896 100% 0.0 73.85 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 895 895 100% 0.0 73.52 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 895 895 100% 0.0 71.03 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 890 890 100% 0.0 72.53 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 889 889 100% 0.0 72.53 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 683 683 99% 0.0 55.74 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 674 674 99% 0.0 55.09 2601 Q8JJX1.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 65.9 65.9 29% 3e-11 32.20 822 P03594.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 56.2 56.2 72% 3e-08 21.22 808 P20179.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:1268 bits(3282), Expect:0.0, Method:Compositional matrix adjust., Identities:611/611(100%), Positives:611/611(100%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 1983 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA Sbjct 1984 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2043 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE Sbjct 2044 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 2103 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT Sbjct 2224 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR Sbjct 2404 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPVVTLYGGPK 611 GPVVTLYGGPK Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:1234 bits(3192), Expect:0.0, Method:Compositional matrix adjust., Identities:590/611(97%), Positives:603/611(98%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQ+SVRQ+VLPVNTLEEV EEKCYPPKLDE KEQLLLKKLQESASMAN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATI+QRLK GC+LYLMSETPKVPTYRTTYPAPVYSPPIN+RLSNPES Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTYPAPVYSPPINVRLSNPES 1983 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACNEFLARNYPTV+SYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQH+YHA Sbjct 1984 AVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAYHA 2043 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P+IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW+E Sbjct 2044 PSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWEE 2103 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGD VLETDIASFDKSQDDSLALTALMLLEDLGVDH LLDLIEAAFGEISSCHLPTGT Sbjct 2224 FKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLT+SACAAFIGDDNIIHGVVSDELMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 ARCATWMNMEVKIIDAVVSQKAPYFCGGFIL+D V GTACRVADPLKRLFKLGKPLAAGD Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRALADEVVRWQRTGL DELEKAV+SRYEVQGISVVVMSMATFASSRSNFEKLR Sbjct 2404 EQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPVVTLYGGPK 611 GPVVTLYGGPK Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:1181 bits(3056), Expect:0.0, Method:Compositional matrix adjust., Identities:558/611(91%), Positives:587/611(96%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQT LPVN +EEV EEKCYPPKLDE KEQLLLK+LQESAS AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATI+ RLK GC+LYL S+TP+VP+YR TYPAPVYSP INI+LSNPE+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSINIKLSNPET 2022 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CNEFLARNYPTVASYQ+TDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKK+ACNQEYW+E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA+SPIR+TTENLT YVTKLKGPKAAALFAKTHNLLPLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2262 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGDAVLETDIASFDKSQDDSLALTA+MLLEDLGVD P+LDLIEAAFGEISSCHLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLE+RLT SACAAFIGDDNIIHGVVSD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 ARCATWMNMEVKIIDAVVS+KAPYFCGGFIL+DTV GT+CRVADPLKRLFKLGKPLAAGD Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRALADEV RWQRTGL ELEKAV+SRYEVQGI+ V+ SMATFASS+ NF+KLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPVVTLYGGPK 611 GPVVTLYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:1179 bits(3049), Expect:0.0, Method:Compositional matrix adjust., Identities:555/611(91%), Positives:587/611(96%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQT LPVN +EEV EEKCYPPKLDE+KEQLLLK+LQESAS AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATI+ RLK GC+LYL SETP+VP+YR TYPAP+YSP INI+L+NPE+ Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTYPAPIYSPSINIKLTNPET 2023 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CNEFLARNYPTVASYQ+TDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA Sbjct 2024 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2083 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKK+ACNQEYW+E Sbjct 2084 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2143 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA+SPIR+TTENLT YVTKLKGPKAAALFAKTHNLLPLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2144 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2203 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA H Sbjct 2204 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2263 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGDAVLETDIASFDKSQDDSLA TA+MLLEDLGVD P+LDLIEAAFGEISSCHLPTGT Sbjct 2264 FKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2323 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLE+RLT SACAAFIGDDNIIHGVVSD LMA Sbjct 2324 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2383 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 ARCATWMNMEVKIIDAVVS+KAPYFCGGFIL+DTV GT+CRVADPLKRLFKLGKPLAAGD Sbjct 2384 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2443 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRALADEV RWQRTGL ELEKAV+SRYEVQGI+ V+ SMATFA+S+ NF+KLR Sbjct 2444 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKKLR 2503 Query 601 GPVVTLYGGPK 611 GPVVTLYGGPK Sbjct 2504 GPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:1177 bits(3045), Expect:0.0, Method:Compositional matrix adjust., Identities:555/611(91%), Positives:588/611(96%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQT LPVN +EEV EEKCYPPKLDE+KEQLLLK+LQESAS AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATI+ RLK GC+LYL S+TP+VP+YR TYPAPVYSP I+I+L+NPE+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSISIKLNNPET 2022 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CNEFLARNYPTVASYQ+TDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKK+ACNQEYW+E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA+SPIR+TTENLT YVTKLKGPKAAALFAKTHNLLPLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISTH 2262 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGDAVLETDIASFDKSQDDSLALTA+MLLEDLGVD P+LDLIEAAFGEISSCHLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLE+RLT SACAAFIGDDNIIHGVVSD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 ARCATWMNMEVKIIDAVVS+KAPYFCGGFIL+DTV GT+CRVADPLKRLFKLGKPLAAGD Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRALADEV RWQRTGL ELEKAV+SRYEVQGI+ V+ SMATFASS+ NF+KLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPVVTLYGGPK 611 GPVVTLYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:1021 bits(2640), Expect:0.0, Method:Compositional matrix adjust., Identities:485/611(79%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQ+SVRQ LP L +EE+ YPP LDE +E+LL K+Q + + AN Sbjct 539 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 598 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKA I+ RLK G + YL ++ K+PTY + YP PVYSP + L NPE Sbjct 599 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 658 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACN FL NYPTVASYQITDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 659 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 718 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKKFACN EYW+E Sbjct 719 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 778 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIRITTEN+TTYVT+LKGPKAAALFAKTHNL+PLQEVPMDRF VDMKRDVKVTPGT Sbjct 779 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 838 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 839 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 898 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIEAAFGEI+S HLPTGT Sbjct 899 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 958 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL ++LT S CAAFIGDDNI+HGV SD LMA Sbjct 959 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 1018 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFILYD V G+ACRVADPLKRLFKLGKPL AGD Sbjct 1019 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 1078 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DE RW R GL ELE A+ SRYEV G +V +MAT A S NF+KLR Sbjct 1079 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 1138 Query 601 GPVVTLYGGPK 611 GP+V LYGGPK Sbjct 1139 GPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2429 Score:1019 bits(2636), Expect:0.0, Method:Compositional matrix adjust., Identities:481/611(79%), Positives:540/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQ L L+ V+EEK YPPKLD +E+LLL K+Q S AN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKAT+V RL G +LY ++ ++PTY YP PVYSP + R S+P+ Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 1938 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 A+AACNE+L+RNYPTVASYQITDEYDAYLDMVDGS+SCLDRATF P+KLR YPK H+YH Sbjct 1939 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 1998 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PT+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK++AC+ EYW+E Sbjct 1999 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 2058 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIRITTEN+TTYVTKLKGPKAAALFAKTHNL+PLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2059 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 2118 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAIIA+H Sbjct 2119 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 2178 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVD LLDLIEAAFGEISSCHLPTGT Sbjct 2179 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 2238 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE RLT SACAAFIGDDNI+HGV+SD+LMA Sbjct 2239 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 2298 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCA+W+NMEVKIIDAV+ +K PYFCGGFI++D+V TACRV+DPLKRLFKLGKPL A D Sbjct 2299 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 2358 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 +QD+DRRRAL+DEV +W RTGL ELE A+ SRYEV+G ++++MAT A F+KLR Sbjct 2359 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 2418 Query 601 GPVVTLYGGPK 611 GPV+ LYGGP+ Sbjct 2419 GPVIHLYGGPR 2429 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:1018 bits(2632), Expect:0.0, Method:Compositional matrix adjust., Identities:483/611(79%), Positives:525/611(85%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQ+SVRQ LP L +EE+ YPP LDE +E+LL K+Q + + AN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKA I+ RLK G + YL ++ K+PTY + YP PVYSP + L +PE Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACN FL NYPTVASYQITDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACN EYW+E Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F PIRITTEN+TTYVT+LKGPKAAALFAKTHNL+PLQEVPMDRF VDMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIE AFGEI+S HLPTGT Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NTLLNI IA RVL ++LT S CAAFIGDDNI+HGV SD LMA Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFILYD V G+ACRVADPLKRLFKLGKPL AGD Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DE RW R GL ELE A+ SRYEV G +V +MAT A S NF+KLR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 601 GPVVTLYGGPK 611 GP+V LYGGPK Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:1008 bits(2607), Expect:0.0, Method:Compositional matrix adjust., Identities:476/611(78%), Positives:530/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQRSVRQ LP TL ++E+ YPP D KE++L K+Q + + AN Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELPCETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEAN 1916 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKA IV+RL+ G KLYL +T KVPTY + YP PVYSP ++ LSNPE Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPEV 1976 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACN FL NYPTVA+YQITDEYDAYLD+VDGSESCLDRATF P+KLR YPK H+YH Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKK+AC EYW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIRITTEN+TTYV KLKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIEAAFGEI+S HLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NTLLNI IA RVL D+L+ SACAAFIGDDNI+HGV SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFILYD+VAGTACRVADPLKRLFKLGKPL A D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DE V+W R GL +EL+ A+ SRY+V G+ + +M+T + + +F K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKIR 2456 Query 601 GPVVTLYGGPK 611 GP++ LYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:1006 bits(2601), Expect:0.0, Method:Compositional matrix adjust., Identities:475/611(78%), Positives:530/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQ+SVRQ LP TL ++E+ YPP D KE++L K+Q + + AN Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELPCETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEAN 1916 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKA IV+RL+ G KLYL +T KVPTY + YP PVYSP ++ LS+PE Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPEV 1976 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVAACN FL NYPTVA+YQITDEYDAYLD+VDGSESCLDRATF P+KLR YPK H+YH Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKK+AC EYW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIRITTEN+TTYV KLKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIEAAFGEI+S HLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NTLLNI IA RVL D+L+ SACAAFIGDDNI+HGV SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFILYD+VAGTACRVADPLKRLFKLGKPL A D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DE V+W R GL +EL+ A+ SRY+V G+ + +M+T + S +F K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKIR 2456 Query 601 GPVVTLYGGPK 611 GP++ LYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:1004 bits(2596), Expect:0.0, Method:Compositional matrix adjust., Identities:481/611(79%), Positives:528/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSD GPGHLQQ+SVRQ L V ++ V EEK YPPKLDE KE+ LL KLQ A+ AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKATI+ RLK G Y+ + K TY Y P YS P+ RLS+ Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRA F P+KLR YPK H+YH Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV+NVECF+K+ACN EYW+E Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA PIRITTENLTTYVTKLKG KAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ H Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FKPGD VLETDIASFDKSQDDSLALT LM+LEDLGVD+ LLDLIEAAFG+I+SCHLPTGT Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE RLT SACAAFIGDDN++HGVVSD+LMA Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAV+ K PYFCGGF++YD V TACR+ADPLKRLFKLGKPL A D Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DEV +W R+GL E+E A+ SRY ++G ++++M+TFA S NF LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 601 GPVVTLYGGPK 611 GPV+ LYGGPK Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:980 bits(2533), Expect:0.0, Method:Compositional matrix adjust., Identities:468/613(76%), Positives:528/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQRSVRQT L E+V EE+ + PK D+ KE+LLL ++Q + + AN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTY--PAPVYSPPINIRLSNP 118 +SRYQSRKVENMKA ++ RL GG KL++ TP T+ P P+YS + LS+ Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 502 Query 119 ESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 178 ++AVAACNEFL+RNYPTV SYQITDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 503 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 562 Query 179 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 238 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW Sbjct 563 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 622 Query 239 KEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 298 EFA PIR+TTEN+T+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVKVTP Sbjct 623 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 682 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 358 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 683 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 742 Query 359 AHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPT 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVD PLL+LIEA+FGEI+S HLPT Sbjct 743 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 802 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDEL 478 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLE+RLT S CAAFIGDDNI+HGV SD+L Sbjct 803 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 862 Query 479 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAA 538 +A RCA WMNMEVKIIDAV+ ++ PYFCGGFI++D V GT CRVADPLKRLFKLGKPL A Sbjct 863 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 922 Query 539 GDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEK 598 D+QD+DRRRALADE RW R G+ +LE A++SRYEV+GI V+ ++ T + + NF Sbjct 923 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 982 Query 599 LRGPVVTLYGGPK 611 LRGPV+ LYGGPK Sbjct 983 LRGPVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:926 bits(2394), Expect:0.0, Method:Compositional matrix adjust., Identities:449/611(73%), Positives:500/611(81%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFS+DTGPGHLQ +SV Q L TLE E+ Y P LD KE+ L + Q + AN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVEN KA +RL G +LY S T + Y+ TYP P YS + S+P+ Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLY-NSATDQPECYKITYPKPSYSSSVAANYSDPKF 2024 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CN +L NYPTVASYQITDEYDAYLDMVDG+ +CLD ATF P+KLRSYPK+H Y A Sbjct 2025 AVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYRA 2084 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+K+ACN EYW+E Sbjct 2085 PNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEE 2144 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA PIRITTE +T YV +LKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2145 FARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2204 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2205 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEH 2264 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FK GD VLETDIASFDKSQDD++ALT LM+LEDLGVD PLLDLIE AFGEISS HLPTGT Sbjct 2265 FKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGT 2324 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL S CAAFIGDDNIIHGVVSD+ MA Sbjct 2325 RFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEMA 2384 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAV+ ++ PYFCGGFIL D+V TACRVADPLKRLFKLGKPL A D Sbjct 2385 ERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADD 2444 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRAL DE W R G+TD L AV +RYEV I+ V++++ TFA S+ F+ +R Sbjct 2445 EQDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAIR 2504 Query 601 GPVVTLYGGPK 611 G + LYGGPK Sbjct 2505 GEIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:925 bits(2391), Expect:0.0, Method:Compositional matrix adjust., Identities:446/608(73%), Positives:497/608(81%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSS+TG GHLQQ+SVRQ L L+ EK Y P+LD +E++L KKLQ AS N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKA +RL G YL SE V YR YP P+YS + R ++ E Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEV 1979 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV CN + NYPTVASY ITDEYDAYLDMVDG+ CLD ATF P+KLRSYPK+HSY Sbjct 1980 AVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQ 2039 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNV+CFKK+ACN EYW Sbjct 2040 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDT 2099 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVTKLKGPKAAALFA THNL PLQE+PMD+F +D+KRDVKVTPGT Sbjct 2100 FRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGT 2159 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2160 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2219 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F GD VLETDIASFDKS+DD++A++ALM+LEDLGVD PLLDLIEAAFG I+S HLPTGT Sbjct 2220 FHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGT 2279 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNTL+NI IASRVL +RLT SACAA IGDDNI+HGVVSD LMA Sbjct 2280 RFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMA 2339 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAV+ KAPYFCGGFIL D + GTACRVADPLKRLFKLGKPL D Sbjct 2340 ERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDD 2399 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD DRRRAL DE +RW R G+TDEL KAV SRYE+ +++ S++T A S NF+ +R Sbjct 2400 TQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIR 2459 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2460 GSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:920 bits(2378), Expect:0.0, Method:Compositional matrix adjust., Identities:446/611(73%), Positives:501/611(81%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFS+DTGPGHLQ++SV Q L TLE E+ + P LD KE+ L + Q + AN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVEN KA +RL G +LY S T + Y+ TYP P+YS + S+P+ Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLY-NSATDQPECYKITYPKPLYSSSVPANYSDPQF 2022 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AVA CN +L NYPTVASYQITDEYDAYLDMVDG+ +CLD ATF P+KLRSYPK+H Y A Sbjct 2023 AVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYRA 2082 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+K+ACN EYW+E Sbjct 2083 PNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEE 2142 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 FA PIRITTE +T YV +LKGPKAAALFAKT+NL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2143 FARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEH 2262 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FK GD VLETDIASFDKSQDD++ALT LM+LEDLGVD PLLDLIE AFGEISS HLPTGT Sbjct 2263 FKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL S CAAFIGDDNIIHGVVSD+ MA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEMA 2382 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAV+ ++ PYFCGGFIL D+V TACRVADPLKRLFKLGKPL A D Sbjct 2383 ERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADD 2442 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 EQD+DRRRAL DE W R G+T L AV +RYEV I+ V++++ TFA S+ F+ +R Sbjct 2443 EQDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAIR 2502 Query 601 GPVVTLYGGPK 611 G + LYGGPK Sbjct 2503 GEIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:902 bits(2332), Expect:0.0, Method:Compositional matrix adjust., Identities:447/613(73%), Positives:496/613(80%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQ+SV Q +E + EK + P LD KE++L + Q S ++AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPT--YRTTYPAPVYSPPINIRLSNP 118 +SRYQSRKVENMKA RL G K+Y+ TP V Y+ TYP P+YS + R +P Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYV---TPDVEAECYKYTYPKPMYSASVPDRFVSP 2006 Query 119 ESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 178 E AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD ATF P+KLRS+PK HSY Sbjct 2007 EVAVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSY 2066 Query 179 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 238 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKK+ACN +YW Sbjct 2067 LEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYW 2126 Query 239 KEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 298 +EF PIRITTE +T+YV +LKGP+AAALFAKTH L+PLQEVPMDRF +DMKRDVKVTP Sbjct 2127 EEFKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTP 2186 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 358 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA Sbjct 2187 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 2246 Query 359 AHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPT 418 A+F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEI+S HLPT Sbjct 2247 ANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPT 2306 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDEL 478 T FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE RL S CAAFIGDDNIIHGVVSD++ Sbjct 2307 ATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKI 2366 Query 479 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAA 538 MA RCATWMNMEVKIIDAV+ KAPYFCGGFIL D V TACRV+DPLKRLFKLGKPL Sbjct 2367 MADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPV 2426 Query 539 GDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEK 598 DEQD DRRRAL DE W R G+ EL KAV SRYEVQ + V++++ATF+ S F+ Sbjct 2427 DDEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKA 2486 Query 599 LRGPVVTLYGGPK 611 LRG LYGGPK Sbjct 2487 LRGSPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:901 bits(2328), Expect:0.0, Method:Compositional matrix adjust., Identities:446/608(73%), Positives:499/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSS+TG GHLQQ+S RQ L LE EK Y P+LD +E+LL KKLQ AS N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKA +RL G YL +E+ V Y+ YP P+YS + R S+ + Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKVNYPVPIYSTTRSNRFSSADV 1986 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV CN L N+PTVASY ITDEYDAYLDMVDG+ CLD ATF P+KLRS+PK+HSY Sbjct 1987 AVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2046 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW Sbjct 2047 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDT 2106 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2107 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2166 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2167 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2226 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVD LLDLIEAAFG I+S HLPTGT Sbjct 2227 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2286 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD LMA Sbjct 2287 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2346 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDA V KAPYFCGGFI+ D V GTACRVADPLKRLFKLGKPL D Sbjct 2347 ERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPLDD 2406 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 +QD DRRRAL DE +RW R G+TDEL KAV SRYEV IS+V+ ++ T A++ SNF+ +R Sbjct 2407 DQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKYIR 2466 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2467 GNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:899 bits(2323), Expect:0.0, Method:Compositional matrix adjust., Identities:443/608(73%), Positives:501/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSS+TG GHLQQ+S RQ L LE EK Y P+LD +E+LL +KLQ AS N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKA +RL G YL +E V Y+ YP PVYS + R S+ + Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKINYPVPVYSTTRSNRFSSADV 1983 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV CN + N+PTVASY ITDEYDAYLDMVDG+ CLD ATF P+KLRS+PK+HSY Sbjct 1984 AVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLK 2043 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2044 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWET 2103 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2104 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2164 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2223 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVD LLDLIEAAFG I+S HLPTGT Sbjct 2224 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2343 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV KAPYFCGGFI+ D + GTACRVADPLKRLFKLGKPL D Sbjct 2344 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2403 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 +QD DRRRAL DE +RW R G+TDEL KAV SRY+V IS+V+ +++T A++ SNF+ +R Sbjct 2404 DQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKHIR 2463 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2464 GNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:898 bits(2320), Expect:0.0, Method:Compositional matrix adjust., Identities:450/608(74%), Positives:504/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD+ KE+LL KKLQ + + AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKA +R+ G YL +E KV YRT +P P+YS +N S+P+ Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+HSY Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 +FKFGAMMKSGMFLTLFVNT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLAA D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2425 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 E DDDRRRAL +E RW R G+ EL KAV SRYE G S++VM+M T ASS +F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:897 bits(2317), Expect:0.0, Method:Compositional matrix adjust., Identities:444/608(73%), Positives:499/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSS+TG GHLQQ+S RQ L LE EK Y P+LD +E+LL KKLQ AS N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSRKVENMKA V+RL G YL +E V Y+ TYPAP+YS + S+ E Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTYPAPMYSSTASNSFSSAEV 2006 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV CN L N+PTVASY ITDEYDAYLDMVDG+ CLD ATF P+KLRS+PK+HSY Sbjct 2007 AVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2066 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P IRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW Sbjct 2067 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDF 2126 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 + +PIR+T EN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2127 YKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2186 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2187 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2246 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVD LL+LIEAAFG I+S HLPTGT Sbjct 2247 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPTGT 2306 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLF+NT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD LMA Sbjct 2307 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDALMA 2366 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV KAPYFCGGFI+ D + GTACRVADPLKRLFKLGKPL D Sbjct 2367 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2426 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 +QD DRRRAL DE RW R G+T+EL KAV SRYEV +S+++ ++ T ASS SNF+ +R Sbjct 2427 DQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKHIR 2486 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2487 GHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:896 bits(2316), Expect:0.0, Method:Compositional matrix adjust., Identities:449/608(74%), Positives:504/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD+ KE+LL KKLQ + + AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSR+VENMKA +R+ G YL +E KV YRT +P P+YS +N S+P+ Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 1997 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+HSY Sbjct 1998 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2057 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2058 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2117 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2118 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2177 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2178 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2237 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2238 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2297 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 +FKFGAMMKSGMFLTLFVNT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2298 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2357 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLAA D Sbjct 2358 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2417 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 E DDDRRRAL +E RW R G+ EL KAV SRYE G S++VM+M T ASS +F LR Sbjct 2418 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2477 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2478 GAPITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:895 bits(2314), Expect:0.0, Method:Compositional matrix adjust., Identities:447/608(74%), Positives:502/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD+ KE+LL KKLQ + + AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSR+VENMKA +R+ G YL +E KV YRT +P P+YS +N S+P+ Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+HSY Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 F +PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATA LCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 +FKFGAMMKSGMFLTLFVNT++NI IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLA D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2425 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 E DDDRRRAL +E RW R G+ EL KAV SRYE G S++VM+M T ASS +F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPVVTLYG 608 G +TLYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:895 bits(2312), Expect:0.0, Method:Compositional matrix adjust., Identities:434/611(71%), Positives:492/611(80%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTGPGHLQQRSV Q E + EK + PKLD+ KE +L K Q S AN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 +SRYQSRKVENMKA IV RL G YL +E P V YR TYP P+YS LS+ ++ Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTEHP-VECYRITYPVPIYSTSDLRGLSSAKT 1920 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN FL N+P+V SY+ITDEYDAYLDMVDGSESCLDR++F+PS+LRS+PK HSY Sbjct 1921 AVRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYLD 1980 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 P I SAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT DSAV NVE F+K+AC + W E Sbjct 1981 PQINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWDE 2040 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 + +PI ITTEN+TTYV KLKGPKAAALFAKTHNL+PL +VPMD+FTVDMKRDVKVTPGT Sbjct 2041 YRDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPGT 2100 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLN L PN+HTLFDMSAEDFDAIIA H Sbjct 2101 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAEH 2160 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 FK GD VLETDIASFDKSQDDS+ALTALM+LEDLGVD L++LIEAAFGEI S HLPTGT Sbjct 2161 FKHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTGT 2220 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 RFKFGAMMKSGMFLTLFVNT+LN+ IA RVLED+L +S AFIGDDNIIHG++SD+LMA Sbjct 2221 RFKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLMA 2280 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATWMNMEVKI+D++V + PYFCGGFI+ D V GTACRVADPLKRLFKLGKPL D Sbjct 2281 DRCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLDD 2340 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 QD+DRRRAL DEV W R GL + +A+ RY V +V++++ T + + +F +R Sbjct 2341 GQDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNIR 2400 Query 601 GPVVTLYGGPK 611 G + LYGGPK Sbjct 2401 GKPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:890 bits(2301), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:502/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD KE++L KKLQ + + AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSR+VENMKA +R+ G YL SE KV YRT +P P+YS +N S+P+ Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 2011 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 2012 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2071 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2072 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2131 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2132 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2191 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2192 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2251 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2252 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2311 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2312 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2371 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLA D Sbjct 2372 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2431 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 E DDDRRRAL +E RW R G+ EL KAV SRYE G +V++M+M T ASS +F LR Sbjct 2432 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLR 2491 Query 601 GPVVTLYG 608 G ++LYG Sbjct 2492 GAPISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:889 bits(2297), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:501/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 60 YIFSSDTG GHLQQ+SVRQTVL LE + E Y P+LD KE++L KKLQ + + AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 120 RSRYQSR+VENMKA +R+ G YL SE KV YRT +P P+YS +N S+P+ Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 2009 Query 121 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 180 AV ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+F P+KLRS+PK+H+Y Sbjct 2010 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2069 Query 181 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 240 PTIRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKK+ACN EYW+ Sbjct 2070 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2129 Query 241 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 300 + +PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2130 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2189 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIIA H Sbjct 2190 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2249 Query 361 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 420 F+PGD VLETDIASFDKS+DD++ALTALM+LEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2250 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2309 Query 421 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 480 +F+FGAMMKSGMFLTLFVNT++N+ IASRVL +RLT S CAAFIGDDNI+ GV SD+LMA Sbjct 2310 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2369 Query 481 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 540 RCATW+NMEVKIIDAVV +KAPYFCGGFIL D+V GTACRVADPLKRLFKLGKPLA D Sbjct 2370 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2429 Query 541 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 600 E DDDRRRAL +E RW R G+ EL KAV SRYE G +V++M+M T ASS +F LR Sbjct 2430 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 2489 Query 601 GPVVTLYG 608 G + LYG Sbjct 2490 GAPIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:683 bits(1762), Expect:0.0, Method:Compositional matrix adjust., Identities:345/619(56%), Positives:435/619(70%), Gaps:23/619(3%) Query 1 YIFSSDTGPGHLQQRS----------VRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLK 50 YIFSSD G HL Q + +R +VLP N + P L E+K++L Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSN-------DHGTPDLLAEMKKRL--- 2034 Query 51 KLQESASMANRSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPP 110 Q + N+SRY S KV NMK IVQ L+ G YL E +P ++ T+P P YS Sbjct 2035 AYQMRPTQKNKSRYLSAKVHNMKHKIVQCLQRGAGHYL-REQHALPLWKNTFPKPRYSDA 2093 Query 111 INIRLSNPESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLR 170 ++ + +A+ A N F+ NYPT++S+ +TD+YDAYLDMVDG LD TF P+K+R Sbjct 2094 CVVKFESVNTAIVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVR 2153 Query 171 SYPKQHSYHAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK 230 S PK+ Y+ P I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FKK Sbjct 2154 SLPKKSKYNQPLIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKK 2213 Query 231 FAC-NQEYWKEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLP-LQEVPMDRFTV 288 FAC + + W EFA P+R++ + YV L+G KA + ++ P L EV MDRFT+ Sbjct 2214 FACKDTDLWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTL 2273 Query 289 DMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDM 348 DMKRDVKVTPGTKH EERPKVQVIQAA+P+ATAYLC IHRELVRRL AVL P++H LFDM Sbjct 2274 DMKRDVKVTPGTKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDM 2333 Query 349 SAEDFDAIIAAHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAF 408 S+EDFDAI+ K GD VLETDI+SFDKSQD ++A+TALMLLEDLGV+ LL LIEA+F Sbjct 2334 SSEDFDAIVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASF 2393 Query 409 GEISSCHLPTGTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDN 468 G+I+S HLPTGTRF+FG+MMKSG+FLTLFVNTLLNITIA+RVL ++L + CAAFIGDDN Sbjct 2394 GDITSVHLPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDN 2453 Query 469 IIHGVVSDELMAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKR 528 +I GVVSD++M ARCA+W+NMEVKI++ + ++PYFCGGF+L DTV GT RV+DP+KR Sbjct 2454 VITGVVSDDMMVARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKR 2513 Query 529 LFKLGKPLAAGDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMAT 588 L K+GKP E D DR RAL +EV W R G+ L+ A +RY V + + M+MAT Sbjct 2514 LMKMGKPALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMAT 2573 Query 589 FASSRSNFEKLRGPVVTLY 607 A ++ RG V+LY Sbjct 2574 LAQDLRSYLGARGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:674 bits(1739), Expect:0.0, Method:Compositional matrix adjust., Identities:341/619(55%), Positives:431/619(69%), Gaps:23/619(3%) Query 1 YIFSSDTGPGHLQQRS----------VRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLK 50 YIFSSD G HL Q + +R +VLP N + P E +++L Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSN-------DHGTPDLPAETRKRL--- 2042 Query 51 KLQESASMANRSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPP 110 Q + N+SRY S KV NMK IV+ L+ G YL E +P ++ T+P P YS Sbjct 2043 AYQMRPTQKNKSRYLSAKVHNMKHKIVRCLQRGAGHYL-REQHALPLWKNTFPKPRYSDA 2101 Query 111 INIRLSNPESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLR 170 ++ + +A+ A N F+ NYPT++S+ ITD+YDAYLDMVDG LD TF+P+K+R Sbjct 2102 CVVKFESVNTAIVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVR 2161 Query 171 SYPKQHSYHAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK 230 S PK+ Y+ P I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FK Sbjct 2162 SLPKKSEYNQPLIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKS 2221 Query 231 FAC-NQEYWKEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLP-LQEVPMDRFTV 288 FAC + + W EFA P+R++ + YV L+G KA + ++ + P L EV MDRFT+ Sbjct 2222 FACKDTDLWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTL 2281 Query 289 DMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDM 348 DMKRDVKVTPGTKH EERPKVQ IQAA+P+ATAYLC IHRELVRRL AVL P++H LFDM Sbjct 2282 DMKRDVKVTPGTKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDM 2341 Query 349 SAEDFDAIIAAHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAF 408 S+EDFDAI+ K GD VLETDI+SFDKSQD ++A+TALMLL DLGV+ LL LIEA+F Sbjct 2342 SSEDFDAIVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASF 2401 Query 409 GEISSCHLPTGTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDN 468 G+I+S HLPTGTRF+FG+MMKSG+FLTLFVNTLLNITIA+RVL ++L + CAAFIGDDN Sbjct 2402 GDITSAHLPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDN 2461 Query 469 IIHGVVSDELMAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKR 528 +I GVVSD++M ARCA+W+NMEVKI+D + +PYFCGGF+L DTV GT RV+DP+KR Sbjct 2462 VITGVVSDDMMVARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKR 2521 Query 529 LFKLGKPLAAGDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMAT 588 L K+GKP E D DR RAL +EV W R G+ L+ A +RY V + + M+MAT Sbjct 2522 LMKMGKPALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMAT 2581 Query 589 FASSRSNFEKLRGPVVTLY 607 A ++ RG V+LY Sbjct 2582 LAQDLRSYLGARGEYVSLY 2600 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 462 to 629 Score:65.9 bits(159), Expect:3e-11, Method:Compositional matrix adjust., Identities:57/177(32%), Positives:79/177(44%), Gaps:11/177(6%) Query 368 LETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGE--ISSCHLPTGTRFKFG 425 LE D++ FDKSQ + +L LG PL + + +S H G F Sbjct 462 LEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSYLSDPHAKVGMSVSF- 520 Query 426 AMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMAARCAT 485 ++G T F NTL +T+A L+ CA F GDD++I V L + Sbjct 521 -QRRTGDAFTYFGNTL--VTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMFTS 577 Query 486 WMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGDEQ 542 NME+K++D V PY C F L +T G V DPL+ + +L K DEQ Sbjct 578 LFNMEIKVMDPSV----PYVCSKF-LVETEMGNLVSVPDPLREIQRLAKRKILRDEQ 629 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 219 to 632 Score:56.2 bits(134), Expect:3e-08, Method:Compositional matrix adjust., Identities:94/443(21%), Positives:166/443(37%), Gaps:34/443(7%) Query 97 TYRTTYPAPVYSPPINIRLSNPESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSE 156 TYR + P + R+S +S AA + L PT A + D Y L+ + Sbjct 219 TYRHSEADDPTMPQYHDRIS-LKSLEAAGHHML----PTHAYFD--DTYYQALEELGDYN 271 Query 157 SCLDRATFNPSKLRSYPKQHSYHAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELP 216 + + + S + Y Y+ P + T + VL A KRN +V ++ + Sbjct 272 VDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSV 331 Query 217 TLDSAVFNV-ECFKKFACNQEYWKEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNL 275 + V E FK+ N S I + +++ L+ K + Sbjct 332 DIKRVACEVAEKFKRAYLNH--------SGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGV 383 Query 276 LPLQEVPMDRFTVDMKRDVK-VTPGTKHTEERPKVQVIQAAEPLATA---YLCGIHRELV 331 L E+ + R+ +K D+K V T H E + + + + Y + Sbjct 384 TVLSEINLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFS 443 Query 332 RRLNAVLLPNVHTLFDMSAEDFDAIIAAHFKPGDAVLETDIASFDKSQDDSLALTALMLL 391 + L + + + + + ++ LE D++ FDKSQ + +L Sbjct 444 KALKSRFVVPIGKISSLELKNVPL-------SNKWFLEADLSKFDKSQGELHLEFQREIL 496 Query 392 EDLGVDHPLLDLIEAAFGEISSCHLPTGTRFKFGAMMKSGMFLTLFVNTLLNITIASRVL 451 LG PL + E G ++G T F NTL+ + + + Sbjct 497 LSLGFPAPLTNWWCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCC 556 Query 452 EDRLTRSACAAFIGDDNIIHGVVSDELMAARCATWMNMEVKIIDAVVSQKAPYFCGGFIL 511 + + CA F GDD+++ L A + NME+K++D + PY C F+L Sbjct 557 D--MNTVDCAIFSGDDSLLICKSKPHLDANVFQSLFNMEIKVMDPSL----PYVCSKFLL 610 Query 512 YDTVAGTACRVADPLKRLFKLGK 534 +T V DP++ + +L K Sbjct 611 -ETEMNNLVSVPDPMREIQRLAK 632