BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: prot.fasta 30,965 sequences; 9,942,157 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subun... 712 0.0 sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subun... 654 0.0 sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subun... 619 0.0 sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subun... 617 0.0 sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subun... 582 0.0 sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subun... 580 0.0 sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU O... 103 3e-24 sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU O... 95.9 1e-21 sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU O... 94.0 6e-21 sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU O... 93.6 8e-21 sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU O... 93.6 9e-21 sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU O... 93.6 9e-21 sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU O... 82.4 5e-17 tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding su... 50.1 1e-06 sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex s... 45.4 3e-05 tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS... 44.3 9e-05 >sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=clpX PE=3 SV=1 Length=426 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/425 (81%), Positives = 382/425 (90%), Gaps = 1/425 (0%) Query 1 MTDKRKDG-SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M D + +G SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECV+LCNDIIREEIKE++P R Sbjct 1 MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 + LPTPHE+RNHLD+YVIGQ++AKKVLAVAVYNHYKRLRNG T GVELGKSNILLIG Sbjct 61 DHDKLPTPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKRLRNGTTKEGVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLAR L+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQRG Sbjct 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TSKILFICGGAFAGL+KVI R TG+GIGFGA VK + DKA+ ++L QVEPEDL+K+G Sbjct 241 TSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKYG 300 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEFIGRLPVVATL EL E ALIQIL +PKNALTKQY ALF +E V+LEFR++AL AIA Sbjct 301 LIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAIA 360 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 KKAM+RKTGARGLRSIVE LLDTMYDLP+++ V K VIDESV+ G+S P+LIY + + Sbjct 361 KKAMSRKTGARGLRSIVEGILLDTMYDLPTVKGVVKAVIDESVVKGESDPILIYENNDTK 420 Query 420 QASGE 424 ASGE Sbjct 421 AASGE 425 >sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=clpX PE=3 SV=1 Length=426 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/418 (77%), Positives = 358/418 (86%), Gaps = 2/418 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EIR LD YVIGQE+AKKVLAVAVYNHYKRL D + +ELGKSNIL+IG Sbjct 61 SGHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL++VI +R G GIGF A V+++ GE +VEPEDL+KFG Sbjct 241 TRNILFICGGAFAGLERVIQNRSARG-GIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL+EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL A+A Sbjct 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPE 417 +KA+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG S+PL+IY E Sbjct 360 RKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSQPLMIYENSE 417 >sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpX PE=3 SV=1 Length=422 Score = 619 bits (1597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 353/417 (85%), Gaps = 5/417 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE-VAPHR 59 MTDK K G KLLYCSFCGKSQHEVRKLIAGPSV+ICDEC++LCNDIIR+EI E V Sbjct 1 MTDK-KAGGEKLLYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEG 59 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLI 118 R+ LPTP EI L+ YVIGQ QAK+ L+VAVYNHYKRLR+ VEL KSNILLI Sbjct 60 TRTTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLI 119 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV KAQ Sbjct 120 GPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQH 179 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHP Q+F+Q+ Sbjct 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQI 239 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI +R E GIGFGA +K++ K + E QVEPEDLIKF Sbjct 240 DTTNILFICGGAFDGLEKVIRNRTEK-IGIGFGAEIKSREGK-NVSESFRQVEPEDLIKF 297 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL EL EEALIQIL EPKNAL KQYQ LF++EGVDLE R AL A+ Sbjct 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 A+KA+ RKTGARGLRSI+E+ALLD MYDLP++E VEKVV+DE I+ ++PLL+Y + Sbjct 358 ARKAIRRKTGARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAE 414 >sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=clpX PE=3 SV=1 Length=423 Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/415 (73%), Positives = 358/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 +S LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V+KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKIS KSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L +VEPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLREVEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQYQ LF +E V+LE R +AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+++ V KV+ID++VI+G KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIY 413 >sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=clpX PE=3 SV=1 Length=434 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/425 (71%), Positives = 354/425 (83%), Gaps = 4/425 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M +K+ K+L+CSFC KSQHEVRKLIAGPSV+ICDEC+DLCNDIIREE + A Sbjct 1 MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAI 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNILLIG 119 RS LPTP EI+ LD YVIGQ K++LAVAVYNHYKR+R+G+ + VEL KSNI+LIG Sbjct 61 RSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLA+TLAR+L+VPF MADATTLTEAGYVGEDVENIIQKLLQ C+YDV+KAQR Sbjct 121 PTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRA 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 I+YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP Q+F+QVD Sbjct 181 IIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T+ ILFI GGAF GL+KVI R E SGIGF A V+AKS++ GEL ++ EPEDLIKFG Sbjct 241 TTNILFIVGGAFDGLEKVIRDRTEK-SGIGFSAAVRAKSERGV-GELFSEAEPEDLIKFG 298 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPE +GRLPVVATL+EL E L+QIL EPKNAL KQ+Q LF +EG +L+ R +AL AI+ Sbjct 299 LIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAIS 358 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 +KA+ RKTGARGLRSI+E ALLDTMYDLPS +V +VV++ + ++G KPLLIY E++ Sbjct 359 RKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGVGKPLLIYAD-ESE 417 Query 420 QASGE 424 ASGE Sbjct 418 AASGE 422 >sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=clpX PE=3 SV=1 Length=421 Score = 582 bits (1499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 286/416 (69%), Positives = 341/416 (82%), Gaps = 4/416 (1%) Query 8 GSGK-LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 G GK LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + +PT Sbjct 7 GDGKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETK-ASGLKATDGVPT 65 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKT 126 P +I LDDYVIGQ AK+VL+VAV+NHYKRL + +EL KSNILLIGPTG GKT Sbjct 66 PKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGKT 125 Query 127 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 LLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+ Sbjct 126 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDEV 185 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 DKI+RKS+NPSITRDVSGEGVQQALLKL+EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFI Sbjct 186 DKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFI 245 Query 247 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 306 CGGAFAGLDK+I+ R + GS +GFGA V+ D+ GE+ +EPEDL+KFGLIPEF+G Sbjct 246 CGGAFAGLDKIIAARGK-GSAMGFGADVRGNDDRGV-GEIFTDLEPEDLLKFGLIPEFVG 303 Query 307 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK 366 RLPV+ATL +L E+AL+ IL +PKNAL KQYQ LF LE +L F D+AL AIAK+A+ RK Sbjct 304 RLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERK 363 Query 367 TGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 TGARGLRSI+E LLDTM+DLP +E V +VV++E ++ + PL+I+ + AS Sbjct 364 TGARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAPLMIHADASKEPAS 419 >sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpX PE=3 SV=1 Length=421 Score = 580 bits (1495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/416 (71%), Positives = 346/416 (83%), Gaps = 5/416 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K A + +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSSA-LKSGDGVPTPR 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI N LDDYVIGQE AK+VL+VAV+NHYKRL N + +EL KSNILLIGPTG GKTLL Sbjct 68 EICNVLDDYVIGQEHAKRVLSVAVHNHYKRL-NHSSKTDIELAKSNILLIGPTGCGKTLL 126 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+DK Sbjct 127 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDK 186 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 I+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 187 ITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 246 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++I+ R G+ +GFGA VK DK GEL Q+EPEDL+KFGLIPEF+GRL Sbjct 247 GAFAGLDRIIAQR-NKGTAMGFGAAVKEDDDKGV-GELFKQLEPEDLLKFGLIPEFVGRL 304 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALI IL +PKNAL KQYQ LF+LE V L F ++AL AIAK+A+ RKTG Sbjct 305 PVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTG 364 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDG-QSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP M+ VE+VV++E +D +KPLLI+ + + AS Sbjct 365 ARGLRSIMEDILLDTMFDLPGMDSVEEVVVNEEAVDNPTAKPLLIHTDSKKETASA 420 >sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=hslU PE=3 SV=1 Length=435 Score = 103 bits (257), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 83/144 (58%), Gaps = 6/144 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T ++ LARL PF +AT TE GYVG DVE II+ L + ++ R DE Sbjct 64 TEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMR-----DE 118 Query 186 IDKISRKSDNPSITRDVSGEGVQQ 209 + + KS + ++GEG ++ Sbjct 119 VKARAHKSAEDRVVAALAGEGARE 142 Score = 94.4 bits (233), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/233 (33%), Positives = 107/233 (46%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 + GIV+IDEIDK++ ++D DVS EGVQ+ LL LIEGT + ++ Sbjct 241 ENGIVFIDEIDKVAARTDARG--GDVSREGVQRDLLPLIEGTTVST-----------KYG 287 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 288 PVRTDHILFIASGAF--------H----------------------------IAKPSDLL 311 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE I+IL E NALT+QY AL EGV ++F + + Sbjct 312 -----PELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQDGIR 366 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A+ A GAR L +++E + + P E VV+D + ++ Sbjct 367 ALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSG-ETVVVDAAFVE 418 >sp|Q9HUC5|HSLU_PSEAE ATP-dependent protease ATPase subunit HslU OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=hslU PE=3 SV=1 Length=447 Score = 95.9 bits (237), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/169 (37%), Positives = 92/169 (54%), Gaps = 21/169 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRA-EVTPKNILMIGPTGVGK 62 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T +A LARL + PF +AT TE GYVG DVE+II+ D+ A ++ E Sbjct 63 TEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIR--------DLADAAVKMLREQE 114 Query 186 IDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 I K+ +++ D + E + ALL AA P G P +E Sbjct 115 IQKVKYRAE------DAAEERILDALLP------AARPAMGFGDEPARE 151 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/238 (31%), Positives = 104/238 (44%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI+++++ DVS EGVQ+ LL LIEG + Sbjct 249 QHGIVFIDEIDKIAKRANAGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 295 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DL+ Sbjct 296 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLV 319 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS +IL EP +LT+QY+ L EG+ +EF ++ + Sbjct 320 -----PELQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL S + ++ID ++ Sbjct 375 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSH 432 >sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=hslU PE=3 SV=1 Length=441 Score = 94.0 bits (232), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQ-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDL 103 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 94/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI ++ + DVS EGVQ+ LL L+EG + KH Sbjct 247 QNGIVFLDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +P DLI Sbjct 295 -VKTDHILFIASGAFQ------------------------------------MSKPSDLI 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L+ L+ +IL EP +LT+QY AL EGV + F + +D Sbjct 318 -----PELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATEGVTISFLESGID 372 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 +A+ A GAR L +++E + D +D Sbjct 373 KLAEAAWQVNERTENIGARRLHTVMEKLMEDISFD 407 >sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=hslU PE=3 SV=1 Length=444 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 48/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 7 TPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRH-EIHPKNILMIGPTGVGK 65 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 T +A LA+L + PF +AT TE GYVG DV+ II+ L +Y +++ + Sbjct 66 TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDL---TEYSIKQTR 114 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 103/235 (44%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ + + DVS +GVQ+ LL L+EGT + Sbjct 250 QNGIVFLDEIDKIAARQETGGA--DVSRQGVQRDLLPLVEGTTV-----------NTRYG 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 297 MVRTDHILFIASGAFH----------------------------------LAR--PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS E + IL E +L KQY AL E V LEF D+ + Sbjct 321 -----PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIR 375 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A + GAR L +++E L + +D S E + ID + +D Q Sbjct 376 RLAELAFSVNERTENIGARRLYTVMEKLLEELSFD-ASANSGEVITIDAAYVDLQ 429 >sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=hslU PE=3 SV=1 Length=435 Score = 93.6 bits (231), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 106/235 (45%), Gaps = 64/235 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITR--DVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 Q GIV++DEIDK+ KSD TR DVS EGVQ+ LL LIEGT + KH Sbjct 241 QNGIVFLDEIDKVCAKSD----TRGGDVSREGVQRDLLPLIEGTTVST------KHGP-- 288 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + T ILFI GAF +P D Sbjct 289 ---IKTDHILFIASGAFH------------------------------------IAKPSD 309 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 L+ PE GRLP+ L L+EE ++IL E NALT QY AL E V + F ++ Sbjct 310 LL-----PELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFTEDG 364 Query 355 LDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 + A+AK A GAR L +++E + + P E++++D + +D Sbjct 365 IAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAG-EEIIVDAAFVD 418 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 65/104 (63%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T ++ LA+L PF +AT TE GYVG DVE II+ L+ Sbjct 64 TEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNA 107 >sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU PE=3 SV=1 Length=442 Score = 93.6 bits (231), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ +AKK +A+A+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LARL + PF +AT TE GYVG DV+ II+ L Sbjct 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDL 103 Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/235 (31%), Positives = 108/235 (46%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDK++ +S+ DVS +GVQ+ LL L+EGT + ++ Sbjct 248 QNGIVFLDEIDKVASRSEGQGA--DVSRQGVQRDLLPLVEGTTIST-----------KYG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 + T ILFI GAF H LA+ P DLI Sbjct 295 MIKTDHILFIASGAF--------H--------------------------LAK--PSDLI 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS E IL + L +QYQAL +GV LEF D+ + Sbjct 319 -----PELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLATDGVTLEFTDDGIR 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + ++ + ++K+++D +D + Sbjct 374 RLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRI-GLDKLLVDAPYVDAR 427 >sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 101/233 (43%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ ++ +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNHEGG-GGEVSRQGVQRDLLPLVEGTTI-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS + IL +L KQYQAL E V LEF D+ + Sbjct 324 -----PELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQALLATEDVKLEFADDGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E LL+ + + V ID + +D Sbjct 379 RLAEIAYAVNEKTENIGARRLYTVIE-KLLEEVSFAAGNHAGQSVTIDSAYVD 430 >tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding subunit clpA OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=Pden_3812 PE=3 SV=1 Length=772 Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/315 (24%), Positives = 119/315 (38%), Gaps = 72/315 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A + L+ A+ LR + G N L GPTG GKT +A+ LA Sbjct 465 LKRLVFGQDAAIEALSSAIKLARAGLREPEKPIG------NYLFAGPTGVGKTEVAKQLA 518 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 L V D + E GYVG D ++ V + ++ Sbjct 519 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTD-------GVDQHPHCVLL 571 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 242 +DEI+K + V LL++++ + GR QVD Sbjct 572 LDEIEK--------------AHPDVYNILLQVMDH--GKLTDHNGR--------QVDFRN 607 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 ++ I + + + GFG + D A+ I+ P Sbjct 608 VILI-------MTSNAGAADQAKAAFGFGRERREGEDTAA-------------IERTFTP 647 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EF RL V + LS E ++Q++++ Q +A GV +E EA D +A++ Sbjct 648 EFRNRLDAVISFAPLSREIIVQVVEK----FVLQLEAQLIDRGVHIELTAEAADWLAERG 703 Query 363 MARKTGARGLRSIVE 377 K GAR L +++ Sbjct 704 YDEKMGARPLGRVIQ 718 >sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex subunit RuvB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=ruvB PE=3 SV=1 Length=340 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/149 (27%), Positives = 68/149 (46%), Gaps = 31/149 (21%) Query 52 IKEVAPHRERSALPTPHE--IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVE 109 + ++ P LP H+ +R + +GQ +A+ L V + + +R G+ + Sbjct 1 MSDIDPTVRADPLPEDHDRALRPQMLSEFVGQAEARANLKVFIASARQR---GEAMD--- 54 Query 110 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 + L GP G GKT LA+ +AR L V F M L +AG D+ I+ L Sbjct 55 ----HTLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAG----DLAAILTNL---- 102 Query 170 DYDVQKAQRGIVYIDEIDKISRKSDNPSI 198 +R +++IDEI ++ NP++ Sbjct 103 ------EKRDVLFIDEIHRL-----NPAV 120 >tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=631 Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTLLA +A VPF + E +VG + Q +K Sbjct 191 LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 244 Query 176 AQRGIVYIDEIDKISR 191 + IV+IDEID + R Sbjct 245 SAPCIVFIDEIDAVGR 260 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2217992868 Database: prot.fasta Posted date: Mar 1, 2025 8:15 PM Number of letters in database: 9,942,157 Number of sequences in database: 30,965 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40