RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.008) C:.501_:[..G]G-----C[..C]:.572_:C (0.004) | 2 (0.010) C:.502_:[..G]G-*---U[..U]:.571_:C (0.009) | 3 (0.007) C:.503_:[..C]C-----G[..G]:.570_:C (0.010) | 4 (0.005) C:.504_:[..C]C-----G[..G]:.569_:C (0.004) | 5 (0.007) C:.505_:[..C]C-----G[..G]:.568_:C (0.007) | 6 (0.010) C:.506_:[..C]C-----G[..G]:.567_:C (0.006) | 7 (0.005) C:.507_:[..A]Ax----U[..U]:.566_:C (0.004) | 8 (0.008) C:.549_:[..G]G-----C[..C]:.565_:C (0.004) | 9 (0.005) C:.550_:[..G]G-----C[..C]:.564_:C (0.008) | 10 (0.004) C:.551_:[..G]G-----C[..C]:.563_:C (0.003) | 11 (0.004) C:.552_:[..G]G-----C[..C]:.562_:C (0.005) | 12 (0.004) C:.553_:[..G]G----xC[..C]:.561_:C (0.002) | 13 (0.005) C:.554_:[..U]U-**-xA[..A]:.558_:C (0.005) | 14 (0.006) C:.555_:[..U]Ux**+xG[..G]:.518_:C (0.005) x 15 (0.007) C:.519_:[..G]G----xC[..C]:.556_:C (0.006) + 16 (0.006) C:.520_:[..U]Ux**-xC[..C]:.548_:C (0.016) | 17 (0.006) C:.521_:[..A]Ax**--G[..G]:.515_:C (0.017) | 18 (0.004) C:.508_:[..U]Ux**--A[..A]:.514_:C (0.013) | 19 (0.009) C:.522_:[..G]G-*---U[..U]:.513_:C (0.007) | 20 (0.007) C:.523_:[..G]G-----C[..C]:.512_:C (0.007) | 21 (0.004) C:.524_:[..A]A-----U[..U]:.511_:C (0.004) | 22 (0.002) C:.525_:[..C]C----xG[..G]:.510_:C (0.008) | 23 (0.010) C:.526_:[..G]G-*---A[..A]:.544_:C (0.007) | 24 (0.008) C:.527_:[..C]C-----G[..G]:.543_:C (0.008) | 25 (0.006) C:.528_:[..G]G-----C[..C]:.542_:C (0.007) | 26 (0.007) C:.529_:[..G]G-----C[..C]:.541_:C (0.002) | 27 (0.006) C:.530_:[..C]C-----G[..G]:.540_:C (0.013) | 28 (0.004) C:.531_:[..C]C-----G[..G]:.539_:C (0.015) | 29 (0.003) C:.532_:[..C]C-*---A[..A]:.538_:C (0.007) | Note: This structure contains 9[5] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ON] 1 G-----C [3] O6 - N4 3.24 N1 - N3 3.38 N2 - O2 3.48 2 G-*---U [2] O6 - N3 2.82 N1 - O2 2.86 3 C-----G [3] O2 - N2 2.98 N3 - N1 2.98 N4 - O6 2.99 4 C-----G [3] O2 - N2 2.75 N3 - N1 2.92 N4 - O6 3.00 5 C-----G [3] O2 - N2 2.98 N3 - N1 2.94 N4 - O6 2.82 6 C-----G [3] O2 - N2 2.79 N3 - N1 2.91 N4 - O6 2.99 7 A-----U [2] N6 - O4 3.18 N1 - N3 3.24 8 G-----C [2] N1 - N3 3.79 N2 - O2 3.54 9 G-----C [3] O6 - N4 3.05 N1 - N3 3.06 N2 - O2 2.94 10 G-----C [3] O6 - N4 3.14 N1 - N3 2.99 N2 - O2 2.70 11 G-----C [3] O6 - N4 2.86 N1 - N3 2.85 N2 - O2 2.70 12 G-----C [3] O6 - N4 2.89 N1 - N3 3.04 N2 - O2 3.06 13 U-**--A [2] O2 - N6 2.95 N3 - N7 3.06 14 U-**+-G [2] O2'- O6 3.98 O2 - N2 2.78 15 G-----C [3] O6 - N4 3.58 N1 - N3 3.20 N2 - O2 2.94 16 U-**--C [1] O4 - N4 2.63 17 A-**--G [1] N3 - N2 3.40 18 U-**--A [3] O2 - N6 2.67 N3 - N7 2.76 O4 * O2P 3.34 19 G-*---U [2] O6 - N3 2.97 N1 - O2 2.67 20 G-----C [3] O6 - N4 2.88 N1 - N3 2.87 N2 - O2 2.74 21 A-----U [2] N6 - O4 3.21 N1 - N3 2.85 22 C-----G [3] O2 - N2 2.88 N3 - N1 3.06 N4 - O6 3.12 23 G-*---A [2] O6 - N6 3.23 N1 - N1 2.87 24 C-----G [3] O2 - N2 2.96 N3 - N1 3.06 N4 - O6 3.33 25 G-----C [3] O6 - N4 2.95 N1 - N3 2.78 N2 - O2 2.54 26 G-----C [3] O6 - N4 2.88 N1 - N3 2.76 N2 - O2 2.59 27 C-----G [3] O2 - N2 2.56 N3 - N1 3.02 N4 - O6 3.42 28 C-----G [3] O2 - N2 2.78 N3 - N1 3.08 N4 - O6 3.31 29 C-*---A [1] O2 - N6 3.10