BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 24,413 sequences; 7,751,731 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subun... 806 0.0 sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subun... 658 0.0 sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subun... 596 0.0 sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subun... 587 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU O... 96.7 7e-22 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 2e-21 sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU O... 93.2 8e-21 sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 tr|A8GCD8|A8GCD8_SERP5 ATP-dependent Clp protease, ATP-binding su... 51.6 4e-07 tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-bin... 51.2 4e-07 tr|A8G901|A8G901_SERP5 ATP-dependent zinc metalloprotease FtsH OS... 46.2 2e-05 tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia... 46.2 2e-05 tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease... 45.8 2e-05 tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS... 45.4 3e-05 tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH OS... 43.5 1e-04 sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex s... 42.7 2e-04 sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=H... 42.7 2e-04 tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombinati... 40.8 8e-04 >sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Serratia proteamaculans (strain 568) OX=399741 GN=clpX PE=3 SV=1 Length=423 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/424 (93%), Positives = 411/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSALPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI RV TGSGIGFGATVK +S+KA+EGELL Q EPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALFNLEGV+LEFR+EAL+AIA+ Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEALNAIAR 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVE ALLDTMYDLPSM+ V+KVVIDESVI GQSKPLLIYGKPEA Q Sbjct 361 KAMKRKTGARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVIAGQSKPLLIYGKPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=clpX PE=3 SV=1 Length=426 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/420 (78%), Positives = 359/420 (85%), Gaps = 2/420 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EI LD YVIGQE+AKKVL+VAVYNHYKRL D + VELGKSNILLIG Sbjct 61 SAHKLPAPKEISAILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL+KVI R T GIGFGA V++K + GE L +VEP+DL+KFG Sbjct 241 TRNILFICGGAFAGLEKVIQAR-STKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL ++A Sbjct 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 ++A+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG SKPLLIY E Q Sbjct 360 QRALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSKPLLIYENSEPQ 419 >sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=clpX PE=3 SV=1 Length=453 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/435 (71%), Positives = 350/435 (80%), Gaps = 30/435 (7%) Query 7 DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 + S K+LYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLC DII+EEI ++ +LPT Sbjct 8 NSSEKVLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCTDIIQEEIAKLPKEEGDESLPT 67 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRL------------RNGD----------- 103 PHEIR +LD YVIGQE AKK LAVAVYNHYKRL ++G Sbjct 68 PHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKESK 127 Query 104 -----TSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 158 +GVEL KSNILLIGPTGSGKTLLA+TLAR+LDVPF MADATTLTEAGYVGEDV Sbjct 128 LPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDV 187 Query 159 ENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 ENIIQKLLQ CDY+V+KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT Sbjct 188 ENIIQKLLQACDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGT 247 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 +A+VPPQGGRKHP Q+FLQVDT+ ILFICGGAF GL+KVI R +GIGF ATV K Sbjct 248 MASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKVIQQRT-AKTGIGFNATVPGK- 305 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D+ +LL +VEPEDLIKFGLIPE IGRLPVVATL +L EEALIQIL EPKNAL KQYQ Sbjct 306 DERGVSDLLIEVEPEDLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQ 365 Query 339 ALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 AL +EG +LE R EAL AIAKKA+ARKTGARGLRSI+E +L+D MYDLPS+++V+KVVI Sbjct 366 ALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLKNVQKVVI 425 Query 399 DESVIDGQSKPLLIY 413 DES I KPLL+Y Sbjct 426 DESSIAEGGKPLLVY 440 >sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=clpX PE=3 SV=1 Length=425 Score = 596 bits (1537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/414 (71%), Positives = 349/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK-TSMVKSREGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ+QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 71 DIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATVKA+ D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVKAEDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+ G ++PL IY + ++A+ Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYIYADRQEEKAN 422 >sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=clpX PE=3 SV=1 Length=411 Score = 587 bits (1512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/417 (70%), Positives = 342/417 (82%), Gaps = 10/417 (2%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIRE----EIKEVA 56 MTDK KD L+CSFCGK + EV +LIAG YIC+EC++LC+ ++ E ++E A Sbjct 1 MTDKDKD-----LHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESA 55 Query 57 PHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNIL 116 E LPTPHEIR HLDDYVIGQ+ AKKVL+VAVYNHYKRLR SN VELGKSNIL Sbjct 56 VENEEK-LPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNIL 114 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLA+TLAR L+VPF MADATTLTEAGYVGEDVEN++QKLLQ C+YD +KA Sbjct 115 LIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKA 174 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 ++GI+YIDEIDKISRKS+ SITRDVSGEGVQQALLKLIEGT+A++PPQGGRKHPQQE + Sbjct 175 EKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMV 234 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 ++DTSKILFICGGAFAGLDK+I R +T + IGF A V+ + S EL QVEP+DL+ Sbjct 235 KLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLM 294 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLP++A L+EL E+ALIQIL +PKNAL KQYQALF LE V+L+F EAL Sbjct 295 KFGLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALK 354 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+AKKA+ RKTGARGLRSIVEA LLDTMYDLPS+E+++KV++DES I P L Y Sbjct 355 AMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAPKLEY 411 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU OS=Serratia proteamaculans (strain 568) OX=399741 GN=hslU PE=3 SV=1 Length=444 Score = 96.7 bits (239), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD Y+IGQ +AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 96.3 bits (238), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/215 (36%), Positives = 98/215 (46%), Gaps = 58/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGGQSS-GPDVSREGVQRDLLPLVEGCTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +T S P DLI Sbjct 298 -VKTDHILFIASGAF-----------QTAS-------------------------PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+ E +IL EP +LT+QY+AL EGV++EF E + Sbjct 321 -----PELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMGTEGVNIEFTAEGIR 375 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 376 RIAEAAWQVNESTENIGARRLHTVLERLMEDISYD 410 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=hslU PE=3 SV=1 Length=446 Score = 93.2 bits (230), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 47/101 (47%), Positives = 68/101 (67%), Gaps = 3/101 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG G Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQ--EVTPKNILMIGPTGVG 61 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 KT +A LA+L + PF +AT TE GYVG DVE+II+ L Sbjct 62 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDL 102 Score = 90.1 bits (222), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/238 (32%), Positives = 107/238 (45%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK++++ + DVS EGVQ+ LL LIEG + Sbjct 248 QHGIVFIDEIDKVAKRGNTGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DL+ Sbjct 295 MVKTDHILFIASGAFH----------------------------------LAK--PSDLV 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL EP +LT+QY AL EG+++EF +E + Sbjct 319 -----PELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAALLKTEGLNIEFAEEGIK 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL + E + ID + ++G Sbjct 374 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQSGEPIRIDAAYVNGH 431 >sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=hslU PE=3 SV=1 Length=435 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD ++IGQ AK+ +A+A+ N ++R + D S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRHIIGQHDAKRAVAIALRNRWRR-QQLDESLRDEVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 64 TEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/215 (31%), Positives = 101/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 243 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T +LFI GAF +P DL+ Sbjct 290 KTDHVLFIASGAFH------------------------------------VAKPSDLL-- 311 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L++E +IL E + +L +QY+AL E +DL+F D+A+DA+ Sbjct 312 ---PELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFTDDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A A+ GAR L++++E L + ++ P Sbjct 369 ADVAVHLNSSVENIGARRLQTVMERVLDEISFNAP 403 >sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=hslU PE=1 SV=1 Length=444 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 93/207 (45%), Gaps = 61/207 (29%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EG+ + KH Sbjct 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 298 -VKTDHILFIASGAF-------------------------------------QVARPSDL 319 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L LS +IL EP +LT+QY+AL EGV++ F +A+ Sbjct 320 I-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 374 Query 356 DAIAKKAM-----ARKTGARGLRSIVE 377 IA+ A GAR L +++E Sbjct 375 KKIAEAAFRVNEKTENIGARRLHTVME 401 >tr|A8GCD8|A8GCD8_SERP5 ATP-dependent Clp protease, ATP-binding subunit clpA OS=Serratia proteamaculans (strain 568) OX=399741 GN=Spro_1674 PE=3 SV=1 Length=759 Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 78/317 (25%), Positives = 126/317 (40%), Gaps = 78/317 (25%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 137 V GQ+QA + L A+ K R G + +G + L GPTG GKT + LA+ +D Sbjct 459 VFGQDQAIEALTEAI----KMSRAGLGHDRKPVG--SFLFAGPTGVGKTEVTVQLAKAMD 512 Query 138 VPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 + D + E GYVG D ++ + K + V V +DEI Sbjct 513 IKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVLKHPHSV-------VLLDEI 565 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 +K + V LL++++ + GRK D ++ + Sbjct 566 EK--------------AHPDVFNLLLQVMDN--GTLTDNNGRK--------ADFRNVILV 601 Query 247 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL---IKFGLIPE 303 + T +G+ ++++ S G L+ Q D IK PE Sbjct 602 ---------------MTTNAGV-------RETERKSIG-LVQQDNSTDAMEEIKKVFTPE 638 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 F RL + N LS E + Q++ + + QA + +GV LE DEA D ++ K Sbjct 639 FRNRLDNILWFNHLSTEVIQQVV----DKFIVELQAQLDAKGVSLEVSDEARDWLSVKGY 694 Query 364 ARKTGARGLRSIVEAAL 380 R GAR + +++ L Sbjct 695 DRAMGARPMARVMQENL 711 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 46/89 (52%), Gaps = 16/89 (18%) Query 112 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT--------TLTEAGYVGEDVEN 160 K+N LL+G +G GKT +AE LA + DVP MAD T L Y G D E Sbjct 206 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRG-DFEK 264 Query 161 IIQKLLQKCDYDVQKAQRGIVYIDEIDKI 189 + LL++ + D + I++IDEI I Sbjct 265 RFKALLKQLEQD----KNSILFIDEIHTI 289 >tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-binding subunit OS=Yersinia pestis OX=632 GN=clpA PE=3 SV=1 Length=758 Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 79/322 (25%), Positives = 128/322 (40%), Gaps = 72/322 (22%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L+ V GQ++A + L+ A+ K R G +G + L GPTG GKT + Sbjct 451 LSDRLNMLVFGQDKAIEALSEAI----KMSRAGLGHERQPVG--SFLFAGPTGVGKTEVT 504 Query 130 ETLARLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQR 178 LA+ LD+ D + E GYVG D ++ V K Sbjct 505 VQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTD-------SVIKHPH 557 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 ++ +DEI+K + V LL++++ + GRK + + V Sbjct 558 AVLLLDEIEK--------------AHPDVFNLLLQVMDN--GTLTDNNGRKADFRNVILV 601 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T+ AG+ R + IGF K +S L + IK Sbjct 602 MTTN---------AGV------RETQRTSIGF------KQQDSSTDAL-------EEIKK 633 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PEF RL + N LS + Q++ + + QA + +GV LE DEA D + Sbjct 634 IFTPEFRNRLDNIIWFNHLSPAVIQQVV----DKFIVELQAQLDAKGVSLEVSDEARDWL 689 Query 359 AKKAMARKTGARGLRSIVEAAL 380 ++K + GAR + +++ L Sbjct 690 SEKGYDKAMGARPMTRVIQENL 711 >tr|A8G901|A8G901_SERP5 ATP-dependent zinc metalloprotease FtsH OS=Serratia proteamaculans (strain 568) OX=399741 GN=ftsH PE=3 SV=1 Length=643 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia pestis OX=632 GN=YPO3902 PE=3 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 >tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease FtsH OS=Yersinia pestis OX=632 GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=ftsH PE=3 SV=2 Length=648 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 >tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=ftsH PE=3 SV=1 Length=621 Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA+ +A VPF + E +VG + + + + Sbjct 186 VLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-----RDMFENAK 239 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 240 KNSPCIIFIDEIDAVGR 256 >sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex subunit RuvB OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=ruvB PE=3 SV=1 Length=343 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 54/118 (46%), Gaps = 27/118 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 LDDY IGQ +AK+ LA+ + KR D ++LL GP G GKT LA +A Sbjct 37 LDDY-IGQHKAKEQLAIFIQAAKKRGEALD----------HVLLFGPPGLGKTTLAHIIA 85 Query 134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD-YDVQKAQRGIVYIDEIDKIS 190 + L V L AG + LL D +DV ++IDEI ++S Sbjct 86 KELGVNLRQTSGPVLERAGDLA--------ALLTNLDPHDV-------LFIDEIHRLS 128 >sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=ftsH PE=3 SV=1 Length=635 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 187 ILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 240 Query 175 KAQRGIVYIDEIDKISRK 192 K +++IDEID + R+ Sbjct 241 KNAPCLIFIDEIDAVGRQ 258 >tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombination protein A OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=NMA1433 PE=3 SV=1 Length=436 Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/156 (27%), Positives = 68/156 (44%), Gaps = 29/156 (19%) Query 65 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSN-ILLIGPTGS 123 P +R H D V+GQE + K LR VE GK + +LL GP G Sbjct 12 PLAERLRPHTLDDVVGQEH--------LIGEGKPLRVA-----VEGGKPHSMLLWGPPGV 58 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKT LA LA+ + F A V V++ I++ + K + +Q+ + I+++ Sbjct 59 GKTTLARILAQSFNAQFLPVSA--------VFSGVKD-IREAIDKAEIALQQGRATILFV 109 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTV 219 DE+ + ++ + + V+ LL I T Sbjct 110 DEVHRFNKAQQDAFLPH------VESGLLTFIGATT 139 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1747117782 Database: proteomes.fasta Posted date: Apr 11, 2024 10:53 PM Number of letters in database: 7,751,731 Number of sequences in database: 24,413 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40