FastQCFastQC Report
Сб 29 ноя 2014
Ath_tae_CTTGTA_L003_R2_007.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R2_007.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA5500.015.54151746-47
CCCGGGG4456.5855056E-611.7430788
GTCGCCG8300.011.15562644-45
TGGTCGC7950.09.55625242-43
GCCCGGG4500.00111250599.5016937
CGCGGCC3001.709016E-59.49736-37
GCCGCGT2808.367809E-59.32688640-41
CGGCCGC3651.8854662E-69.106256538-39
AGAGCGT13150.09.0311239
AGCGTCG9750.09.01307410-11
GGCCGCG2951.4770807E-48.85269238-39
GAGCGTC9256.574919E-88.7304129
GCGGCCG3501.0440734E-48.140285536-37
GGTCGCC5906.031769E-98.04790242-43
TCGCGGC4453.129404E-68.0028434-35
CCGTATC10700.07.99327848-49
GGCGCCG3304.954997E-47.9138244-45
TCGGTGG12650.07.882490638-39
GGGCCAT7955.3438E-57.7691661
GGTGGTC12150.07.4252240-41
Produced by FastQC (version 0.11.2)