FastQCFastQC Report
Чт 19 фев 2015
Ath_tae_CTTGTA_L003_R2_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R2_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA4800.012.863090546-47
GCGCCCG1400.003517503211.87325144-45
GGCGCCC1851.8349677E-411.55235244-45
ATGGCCC6452.9003786E-811.0515194
CGCGGCC3102.3208486E-69.96032836-37
TGGTCGC6300.09.79977642-43
AGCGTCG7900.09.31941310-11
GCCGCGT3702.261857E-68.98482640-41
TCGGTGG11150.08.73260738-39
GAGCGTC7101.299434E-58.6969899
CGTCGTG8550.08.6109212-13
GGGCGCC2500.00291199248.5484242-43
AGAGCGT11503.7016434E-98.2606869
GGGCCAT7603.0365107E-58.1289881
CGGCCGC3551.2277982E-48.02763838-39
TCGGAAG15403.6379788E-128.0231164
TCGCGGC3601.4421323E-47.91718434-35
GCGGCCG3304.9324584E-47.917183436-37
GTCGCCG9000.07.915544-45
GGCCGCG3651.6948023E-47.80770438-39
Produced by FastQC (version 0.11.2)