RID: 6S5YTSPE016 Job Title:POL1_BBWVS Q76L40 RNA1 polyprotein (Genome Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POL1_BBWVS Q76L40 RNA1 polyprotein (Genome polyprotein B) Query ID: lcl|Query_58400 Length: 699 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 649895 1462 1462 100% 0.0 100.00 1842 Q76L40.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 1031 1031 99% 0.0 67.19 1870 Q9WNW0.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 512 512 96% 3e-161 39.71 1864 P35930.1 RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 509 509 94% 3e-160 40.35 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Andean potat... NA 12259 482 482 97% 4e-160 38.12 729 Q02941.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 499 499 94% 1e-156 40.74 1850 Q9YJU5.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 490 490 94% 4e-153 40.69 1858 P36312.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine fa... NA 12274 353 353 91% 3e-104 35.23 2284 P29149.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Arabis mosai... NA 282063 348 348 85% 1e-102 36.12 2284 Q6W8W5.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Blackcurrant... NA 65743 311 311 83% 5e-90 33.78 2094 Q8V5E0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Beet ringspo... NA 191547 290 290 87% 9e-83 32.67 2264 P18522.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato black... NA 283677 289 289 86% 2e-82 33.64 2266 Q8B8X3.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine ch... NA 12273 281 281 90% 1e-79 32.14 2252 P13025.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato rings... NA 12281 263 263 92% 2e-73 29.99 2197 P29150.2 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Raspberry ri... NA 281921 263 317 92% 2e-73 31.94 2367 Q6W8W4.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tobacco ring... NA 282064 258 258 84% 8e-72 32.01 2304 Q88893.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Cycas necrot... NA 173976 245 245 93% 1e-67 29.45 2336 Q8QVV0.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cherry rasp ... NA 650137 228 228 64% 9e-62 32.63 2250 Q6EWG9.1 RecName: Full=Genome polyprotein; Contains: RecName:... Parsnip yell... NA 33762 199 199 65% 6e-52 30.69 3027 Q05057.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Satsuma dwar... NA 650481 196 196 59% 3e-51 31.21 2081 Q9WAL8.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 178 178 58% 3e-45 28.60 3473 Q83034.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 178 178 58% 3e-45 28.60 3471 Q91PP5.1 RecName: Full=RNA1 polyprotein; Contains: RecName:... Tomato torra... NA 686948 177 177 61% 7e-45 30.85 2158 A1XIP9.1 RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 156 156 52% 3e-38 29.84 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 130 130 67% 9e-30 24.35 1759 O36966.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 93.2 93.2 60% 4e-18 26.02 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 90.1 90.1 60% 3e-17 24.72 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 89.7 89.7 60% 5e-17 24.83 2228 Q9DWR1.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 89.0 89.0 60% 8e-17 24.49 2228 A5LGW7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 88.6 88.6 60% 1e-16 25.40 2225 Q5Y944.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470424 87.4 87.4 60% 2e-16 24.28 2052 Q05794.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 87.4 87.4 60% 2e-16 24.50 2227 Q67825.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 87.4 87.4 62% 2e-16 24.07 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 87.4 87.4 60% 3e-16 24.50 2227 P08617.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 12102 86.7 86.7 60% 4e-16 24.11 2230 P14553.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 85.1 85.1 60% 1e-15 24.28 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cosavirus A ... NA 1554483 80.1 80.1 58% 4e-14 26.00 2124 B8XTP8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73481 75.1 75.1 52% 1e-12 27.15 2336 P49303.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 74.7 74.7 59% 2e-12 24.06 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 74.3 74.3 58% 3e-12 26.54 2293 P12296.3 RecName: Full=Polyprotein-FSD; Contains: RecName: Full=Helicas... Solenopsis i... NA 631345 73.6 73.6 42% 4e-12 26.65 3390 C1JCT2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12113 73.6 73.6 55% 5e-12 26.08 2332 P03307.2 RecName: Full=Polyprotein; Contains: RecName: Full=Helicase;... Solenopsis i... NA 631345 73.6 73.6 42% 5e-12 26.96 2580 C1JCT1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12121 73.2 73.2 55% 6e-12 26.08 2327 P15072.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12120 73.2 73.2 55% 6e-12 26.08 2327 P03311.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12115 73.2 73.2 55% 7e-12 26.08 2333 P03309.2 RecName: Full=Genome polyprotein; Contains: RecName:... Canine calic... NA 292348 72.8 72.8 49% 7e-12 25.93 1929 Q8V736.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12117 72.0 72.0 55% 1e-11 25.82 2328 P03310.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12112 71.6 71.6 55% 2e-11 25.82 2332 P03306.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12114 71.2 71.2 54% 2e-11 25.26 2333 P03308.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73482 70.5 70.5 55% 4e-11 25.82 2332 P03305.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Saffold virus NA 434309 69.7 69.7 60% 6e-11 25.99 2295 C0MHL9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 69.3 69.3 59% 8e-11 23.58 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 68.2 68.2 50% 2e-10 27.15 2292 P17594.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 68.2 68.2 50% 2e-10 27.15 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Sweet potato... NA 652105 67.8 67.8 27% 3e-10 31.84 3456 P89201.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 67.4 67.4 59% 3e-10 23.58 2134 Q6WQ42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12125 65.1 65.1 34% 2e-09 27.35 2303 P08544.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's mu... NA 12127 64.7 64.7 34% 3e-09 27.05 2303 P08545.2 RecName: Full=Genome polyprotein; Contains: RecName:... San Miguel s... NA 36407 63.5 63.5 39% 4e-09 25.81 1214 P36287.2 RecName: Full=Genome polyprotein; Contains: RecName:... San Miguel s... NA 36406 62.8 62.8 39% 8e-09 25.72 1879 P36286.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 650129 62.4 62.4 50% 1e-08 26.02 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 62.4 62.4 50% 1e-08 26.02 2290 P03304.1 RecName: Full=Genome polyprotein; Contains: RecName:... Feline calic... NA 11979 61.6 61.6 45% 2e-08 23.85 1762 P27407.3 RecName: Full=Genome polyprotein; Contains: RecName:... Vesicular ex... NA 85617 61.2 61.2 39% 3e-08 25.36 1881 Q9DUN3.1 RecName: Full=Genome polyprotein; Contains: RecName:... Nebraska virus NA 2847999 60.5 60.5 37% 4e-08 23.42 2210 Q8JN60.1 RecName: Full=Genome polyprotein; Contains: RecName:... Feline calic... NA 11980 60.1 60.1 48% 5e-08 25.14 1763 P27408.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 60.1 60.1 38% 6e-08 25.64 2181 Q155Z9.1 RecName: Full=Genome polyprotein; Contains: RecName:... Feline calic... NA 11981 60.1 60.1 48% 7e-08 25.43 1763 P27409.1 RecName: Full=Genome polyprotein; Contains: RecName:... Feline calic... NA 292349 57.8 57.8 50% 3e-07 25.14 1763 Q66914.1 RecName: Full=Genome polyprotein 1; Contains: RecName:... Barley mild ... NA 103900 56.2 56.2 29% 1e-06 26.79 2258 P90245.1 Alignments: >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L40.1 Length: 1842 Range 1: 1144 to 1842 Score:1462 bits(3785), Expect:0.0, Method:Compositional matrix adjust., Identities:699/699(100%), Positives:699/699(100%), Gaps:0/699(0%) Query 1 SDFLLSYDEWAVPKVLGPGCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSIL 60 SDFLLSYDEWAVPKVLGPGCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSIL Sbjct 1144 SDFLLSYDEWAVPKVLGPGCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSIL 1203 Query 61 VKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPV 120 VKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPV Sbjct 1204 VKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPV 1263 Query 121 DLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILAD 180 DLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILAD Sbjct 1264 DLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILAD 1323 Query 181 IHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVR 240 IHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVR Sbjct 1324 IHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVR 1383 Query 241 FIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMF 300 FIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMF Sbjct 1384 FIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMF 1443 Query 301 SNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKY 360 SNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKY Sbjct 1444 SNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKY 1503 Query 361 AYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDG 420 AYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDG Sbjct 1504 AYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDG 1563 Query 421 VDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 VDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS Sbjct 1564 VDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 1623 Query 481 NCNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPFVEAC 540 NCNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPFVEAC Sbjct 1624 NCNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPFVEAC 1683 Query 541 HQLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGF 600 HQLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGF Sbjct 1684 HQLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGF 1743 Query 601 QIIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAI 660 QIIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAI Sbjct 1744 QIIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAI 1803 Query 661 MLYRSVDRLPRALSNKALTSALGICKKLSYLPKDFPDLF 699 MLYRSVDRLPRALSNKALTSALGICKKLSYLPKDFPDLF Sbjct 1804 MLYRSVDRLPRALSNKALTSALGICKKLSYLPKDFPDLF 1842 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 1173 to 1870 Score:1031 bits(2665), Expect:0.0, Method:Compositional matrix adjust., Identities:469/698(67%), Positives:575/698(82%), Gaps:0/698(0%) Query 2 DFLLSYDEWAVPKVLGPGCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILV 61 DF+L Y EWA PK+LGPGC+A+G+I PEH + + GKT+F+ETP EW L+ PC K+PS+L Sbjct 1173 DFMLKYQEWAEPKILGPGCRAMGLIDPEHALAASGKTTFVETPEEWHLDYPCDKLPSVLA 1232 Query 62 KGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVD 121 +GD RLAGT +ADYDPFA GM+KYAKEAGPF+ L +VC I E W DAS F VD Sbjct 1233 RGDPRLAGTVHADYDPFASGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASADFPMDEVD 1292 Query 122 LEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADI 181 L+ A+NG+EN+E+FDALVL TSEG+PYRLDR PG+KGK+RYV GE G+L+ITDE +L+DI Sbjct 1293 LDTAINGLENVEFFDALVLGTSEGFPYRLDRGPGDKGKSRYVSGESGSLKITDEGVLSDI 1352 Query 182 HWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRF 241 WFEE+SKTQVPDLYCIECVKDERLP+RKV+ EPKSRLFTVLPMSYN+ IRKKFLNFVRF Sbjct 1353 AWFEEVSKTQVPDLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRF 1412 Query 242 IMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFS 301 MKRRDVL QVGINPYSR+W ++A++LL KGN+ILCCDYSRFDGFLPKCIM +I M + Sbjct 1413 FMKRRDVLTAQVGINPYSREWTRMANKLLSKGNNILCCDYSRFDGFLPKCIMNEIGNMIA 1472 Query 302 NIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYA 361 ++ R Q KNLMLAC SRYA+C RVLYRVENGIPSGFPLTVIVNSILNEIL+KYA Sbjct 1473 RLMKTDEVSRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYA 1532 Query 362 YWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGV 421 YW CFE ++ +FD +V+MVVYGDDNLISVS+AISS+F+GNFLV+FM LGIKVTDG+ Sbjct 1533 YWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFMEGLGIKVTDGI 1592 Query 422 DKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISN 481 DKTKVGIEFR +E+CDFLKR FK + DGTW M++E LWPQLHFVKAKK+EM+EAYI+N Sbjct 1593 DKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKKLEMAEAYINN 1652 Query 482 CNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPFVEACH 541 CNNILRELWL ++A FR +V+ L+W+ ++LL + Q+A+FH+EQMNG F+ C Sbjct 1653 CNNILRELWLHDVKEAEEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGVSDFLSTCV 1712 Query 542 QLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGFQ 601 ++++ LM PL PGMLP+KT EI+P +FVA+EK+F GNF+D+FTISITT+RKFE+ KGF Sbjct 1713 TVDSIPLMDPLVPGMLPVKTSEIIPRVFVAAEKHFEGNFNDFFTISITTSRKFEEDKGFV 1772 Query 602 IIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIM 661 ++FPYGAGRGGLP+ FM +NVIRKGC+IQK F+Q EKGN +LFISQSSV+P+YVFA+M Sbjct 1773 LLFPYGAGRGGLPTTQFMRENVIRKGCSIQKKFRQAYEKGNNILFISQSSVVPSYVFAVM 1832 Query 662 LYRSVDRLPRALSNKALTSALGICKKLSYLPKDFPDLF 699 L S+ + R SNKALT A+ CK+L YLPK++ + F Sbjct 1833 LLHSIGAISRLSSNKALTQAMQTCKRLEYLPKEYEEFF 1870 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Red clover mottle virus] Sequence ID: P35930.1 Length: 1864 Range 1: 1169 to 1856 Score:512 bits(1318), Expect:3e-161, Method:Compositional matrix adjust., Identities:274/690(40%), Positives:394/690(57%), Gaps:16/690(2%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPF 78 G VG + P+ + KTS ++TP EW L PC K+PSILVKGD RLA T +ADYDP Sbjct 1169 GIARVGELKPKLYIPLPKKTSLVKTPEEWHLGTPCDKVPSILVKGDPRLADTVHADYDPC 1228 Query 79 AVGMTKYAKEAGPFEPNGLDRVCESIAETWHDA-SDGFEFGPVDLEAALNGIENMEYFDA 137 G+TKY+ P + L C+ I + W D +GFE G V + ALNG++ ++Y D Sbjct 1229 LSGLTKYSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVTINEALNGVDGVDYMDR 1288 Query 138 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKT---QVPD 194 + L+TSEG+P+ + R+ GEKGK R+V+G+ + + + + +E +S+T +VP Sbjct 1289 IPLATSEGFPHVMSREQGEKGKQRFVQGDGHIVSLIPGTSVHEA--YETLSRTIATEVPT 1346 Query 195 LYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVG 254 L IEC KDE+LP RKV +PK+R FT+LPM YN+ +R+ FLNFVRFIMK+RDVLPCQVG Sbjct 1347 LVGIECPKDEKLPFRKVFTKPKTRNFTILPMEYNILVRQYFLNFVRFIMKKRDVLPCQVG 1406 Query 255 INPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQT 314 INPYS +W VA RL +GN ILCCDYS FDG L K IM +A+M + G + Sbjct 1407 INPYSMEWSIVASRLKSQGNDILCCDYSSFDGLLSKQIMEMMADMINRFCGGGTLICAKR 1466 Query 315 KNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETE---SL 371 KNL++ACCSR AI ++R+E GIPSGFPLTVI NSI NEIL++Y Y + ++ Sbjct 1467 KNLLMACCSRLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPNM 1526 Query 372 IRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFR 431 F ++MV YGDDNLISV+ + F+G L M GI +TDG DKT +EFR Sbjct 1527 YVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFR 1586 Query 432 TIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWL 491 +EDCDFLKR F + + W + LW QLH+V EM AY++N N+LREL++ Sbjct 1587 RLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNVNNCEMQVAYMTNLVNVLRELYM 1646 Query 492 GSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHP-FVEACHQLENLELMA 550 P + FRR + + W+ L T+ QV F+ EQ P ++ L +++L+ Sbjct 1647 HDPTEMVEFRRLALKSIPWLNTTDLPTLYQVKEFYAEQRLRNIPDHNDSLDMLTSVDLLG 1706 Query 551 PLEPGMLPIKTQEIMPGLFVASEKNFTGNFDD------YFTISITTNRKFEDGKGFQIIF 604 P G + ++ L + + D+ + + +K + Sbjct 1707 PAILGEGVPQEALVLSELLEVRDLRYHTVPDNDNGKEVWILFNTMYPQKLLPSNCHSFTW 1766 Query 605 PYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIMLYR 664 G GRGGLP++ ++ NV R + K + + K++ ++ +++P V A++L Sbjct 1767 NCGQGRGGLPTQHWLATNVTRTDSKLNKLIRTAVAANKKIVLATKDNILPINVIAVLLAA 1826 Query 665 SVDRLPRALSNKALTSALGICKKLSYLPKD 694 +P +N LT +G KKL++L + Sbjct 1827 RNKVMPSLATNALLTYVIGAAKKLNFLTSE 1856 >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 1191 to 1859 Score:509 bits(1311), Expect:3e-160, Method:Compositional matrix adjust., Identities:276/684(40%), Positives:396/684(57%), Gaps:40/684(5%) Query 37 KTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNG 96 KT+ +ETP EW L+ PC K+PSILV D R+ ++ YDP G++KY++ +P Sbjct 1191 KTALVETPSEWHLDTPCDKVPSILVPTDPRIPA-QHEGYDPAKSGVSKYSQPMSALDPEL 1249 Query 97 LDRVCESIAETWHD-ASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPG 155 L V + E WHD A D +FG V LE ALNG E +EY + + L+TSEG+P+ L R Sbjct 1250 LGEVANDVLELWHDCAVDWDDFGEVSLEEALNGCEGVEYMERIPLATSEGFPHILSRNGK 1309 Query 156 EKGKARYVEGEPGNLEITDERILADIHWFEEISKTQ---VPDLYCIECVKDERLPVRKVI 212 EKGK R+V+G+ + + +A +EE+ + VP L IEC KDE+LP+RKV Sbjct 1310 EKGKRRFVQGDDCVVSLIPGTTVAKA--YEELEASAHRFVPALVGIECPKDEKLPMRKVF 1367 Query 213 KEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEK 272 +PK+R FT+LPM YNL +R+KFLNFVRFIM R L CQVGINPYS +W ++A R+ EK Sbjct 1368 DKPKTRCFTILPMEYNLVVRRKFLNFVRFIMANRHRLSCQVGINPYSMEWSRLAARMKEK 1427 Query 273 GNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVL 332 GN +LCCDYS FDG L K +M IA M + + G + +NL++ACCSR AIC + Sbjct 1428 GNDVLCCDYSSFDGLLSKQVMDVIASMINELCGGEDQLKNARRNLLMACCSRLAICKNTV 1487 Query 333 YRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETES---LIRDHFDTYVAMVVYGDDN 389 +RVE GIPSGFP+TVIVNSI NEILI+Y Y K + L+ FD + +V YGDDN Sbjct 1488 WRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDN 1547 Query 390 LISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADG 449 LISV+ ++ F+G L + G+ +TDG DKT + + FR +E+CDFLKR F + + Sbjct 1548 LISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSST 1607 Query 450 TWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLGSPEKAAAFRREVISKLK 509 W + LW QLH+V E AY++N N+LREL++ SP +A FRR+V+ K+ Sbjct 1608 IWDAPEDKASLWSQLHYVNCNNCEKEVAYLTNVVNVLRELYMHSPREATEFRRKVLKKVS 1667 Query 510 WVEPQRLLTISQVALFHNEQ-MNGEHPFVEACHQLENLELMAPLEPGMLPIK-TQEIMPG 567 W+ L T++Q+ F+ Q G + C L +++L+ P P+ +E M G Sbjct 1668 WITSGDLPTLAQLQEFYEYQRQQGGADNNDTCDLLTSVDLLGP------PLSFEKEAMHG 1721 Query 568 LFVASEKNFTGNFDDYFTISITTNRKFEDGKGF----------------QIIFPYGAGRG 611 V SE+ T N Y RK ED F + + G+GRG Sbjct 1722 CKV-SEEIVTKNLAYY-----DFKRKGEDEVVFLFNTLYPQSSLPDGCHSVTWSQGSGRG 1775 Query 612 GLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIMLYRSVDRLPR 671 GLP++++M N+ RK I K + + +++F ++ +++P + A++ +P Sbjct 1776 GLPTQSWMSYNISRKDSNINKIIRTAVSSKKRVIFCARDNMVPVNIVALLCAVRNKLMPT 1835 Query 672 ALSNKALTSALGICKKLSYLPKDF 695 A+SN L + K +LP++F Sbjct 1836 AVSNATLVKVMENAKAFKFLPEEF 1859 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Andean potato mottle virus] Sequence ID: Q02941.1 Length: 729 Range 1: 44 to 729 Score:482 bits(1240), Expect:4e-160, Method:Compositional matrix adjust., Identities:263/690(38%), Positives:392/690(56%), Gaps:13/690(1%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENAD-YDP 77 G VG + V KTSF TP + L PC K PSIL D R+ E+ + Y P Sbjct 44 GLALVGELKQGVYVSCPTKTSFERTPESYHLGLPCEKEPSILSSHDPRIP--EHVEGYCP 101 Query 78 FAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDA 137 F G+ KYA G + + + V + E+WHD F F VDLE A+NGI+ +EY + Sbjct 102 FRAGIQKYANPMGHLDHDLMYEVAHDMQESWHDCVQDFTFPEVDLETAINGIDMVEYMEC 161 Query 138 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWF--EEISKTQVPDL 195 + STSEG+P+ L R PGEKGK R++EG+ + + + + EEI ++ VP L Sbjct 162 IPKSTSEGFPHVLSRAPGEKGKMRFLEGDGEKFSLREGTSVKKAYDLLQEEIDRS-VPTL 220 Query 196 YCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGI 255 IEC KDE+LP+RK+ PK+R F++LPM YNL +R+KFL+FVRF+MKRRDVLP QVG+ Sbjct 221 VAIECPKDEKLPLRKIYTSPKTRCFSILPMEYNLLVRQKFLHFVRFMMKRRDVLPSQVGV 280 Query 256 NPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTK 315 NPYS +WG +A RL E GNSILCCDYS FDG + +M IA+ ++ +G + + Q K Sbjct 281 NPYSLEWGAIARRLQEVGNSILCCDYSSFDGLMSSQVMSCIADTMNDFMGGDVSLKRQRK 340 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFE---TESLI 372 NL++ACCSR+++ ++RVE GIPSGFPLTV++N I NE+L++Y + K L Sbjct 341 NLLMACCSRFSVVKGNVWRVEGGIPSGFPLTVVMNGIFNELLVRYCFKKIMREGGATPLE 400 Query 373 RDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 FD+Y+ VVYGDDNLISVS I KFNG L M G+ +TDG DKT +EFR Sbjct 401 CSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRP 460 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLG 492 +EDCDFLKR F + ++ W L+ QLH+V K + +AY N N++REL++ Sbjct 461 LEDCDFLKRGFIQRSELVWDAPEERSSLYTQLHYVSTKMQSLEDAYTGNLVNVIRELYMH 520 Query 493 SPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPFVEACHQLENLELMAPL 552 SP++A+ RR+ + L W+ ++ T+ V F+ Q G + E+ + +L + Sbjct 521 SPKEASDLRRKALRDLPWLSRSKIGTMENVQAFYAMQRAG-YRMDESIDVICDLAKLGKY 579 Query 553 EPGMLPIKTQEIMPGLFVASEKNF---TGNFDDYFTISITTNRKFEDGKGFQIIFPYGAG 609 G + + P + + F D+++ + T +F++ + Q+ + G+G Sbjct 580 VKGEACKEIVWLTPTVGACDLRYFDWQNAKVDEFWVLCQTNYHEFDENRVMQLCWTPGSG 639 Query 610 RGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIMLYRSVDRL 669 RGGLP+ ++ ++ + ++K + + K++F ++ V+ V A + D + Sbjct 640 RGGLPTAHWLRTCMLLEKGNVRKKLHWAMAEKKKIIFCAKGGVLIPTVMAGIFLSKEDPM 699 Query 670 PRALSNKALTSALGICKKLSYLPKDFPDLF 699 LT A+ K L +L + +LF Sbjct 700 LNLAGVSTLTCAMESVKTLGFLKEGNLNLF 729 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: Q9YJU5.1 Length: 1850 Range 1: 1176 to 1848 Score:499 bits(1285), Expect:1e-156, Method:Compositional matrix adjust., Identities:275/675(41%), Positives:396/675(58%), Gaps:14/675(2%) Query 37 KTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNG 96 KT+ +ETP EWQL+ PC KIPS+L D RL GTE+ D + +KYA P + Sbjct 1176 KTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEDM-THSWWYSKYATPMMPLDEEI 1234 Query 97 LDRVCESIAETWHDASDGFE-FGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPG 155 L +V + + E W D D + F V L AALNG+E ++Y + + L+TSEG+P+ L RK G Sbjct 1235 LSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSEGFPHVLSRKNG 1294 Query 156 EKGKARYVEGEPGNLEITDERILADIH--WFEEISKTQVPDLYCIECVKDERLPVRKVIK 213 EKGK R+V G+ + + + + + E+ K VP L IEC KDE+LP RK+ Sbjct 1295 EKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVELEKC-VPTLVGIECPKDEKLPRRKIFD 1353 Query 214 EPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKG 273 +PK+R FT+LPM +NL +R+KFLNFVRFIMK+RD L CQVGINPYS +W +A+RLL KG Sbjct 1354 KPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSMEWTGLANRLLSKG 1413 Query 274 NSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLY 333 N ILCCDY+ F G + K +M K+AEM +++ G + +L+LACCSR AIC + ++ Sbjct 1414 NDILCCDYASFSGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLACCSRMAICKKDIW 1473 Query 334 RVENGIPSGFPLTVIVNSILNEILIKYAYWKCF---ETESLIRDHFDTYVAMVVYGDDNL 390 RVE GIPSGFPLTVI NSI NE+LI+Y+Y K + S+ F ++++ VYGDDNL Sbjct 1474 RVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNL 1533 Query 391 ISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGT 450 ISV E + F+G+ L +F+ + I +TDG+DKT ++FR + +CDFLKR FK+ ++ Sbjct 1534 ISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVL 1593 Query 451 WSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLGSPEKAAAFRREVISKLKW 510 W + LW QLH+V +EM EAY+ N N+LREL+L SPE+A RR+ +S ++W Sbjct 1594 WVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSPEEARRLRRKALSCIEW 1653 Query 511 VEPQRLLTISQVALFHNEQMNGEHPFVEACHQLENLELMAPLEPGMLPIKTQEIMPGLFV 570 ++ + TI+Q+ FH+ Q P L + L+ P + + V Sbjct 1654 LQKADVPTIAQIEEFHSMQRIMNAPDSNDNIDLLLSIDLLGLQGAARPSQIRLWFDDKLV 1713 Query 571 A--SEKNFTGNF--DDYFTISITTNRKFEDGKGFQIIFPY--GAGRGGLPSKAFMEQNVI 624 +++ F GNF D + I + +I G+GRGGLP+ A++ V Sbjct 1714 LANTQEFFDGNFPADSWLPIFVNCLYPVSQLPAEAVIVNVVCGSGRGGLPTTAWISSAVN 1773 Query 625 RKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIMLYRSVDRLPRALSNKALTSALGI 684 + I K + L KG K++F+++ P + A++ + L +N LT L Sbjct 1774 NRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVKNEILSSNATNPMLTRLLEN 1833 Query 685 CKKLSYLPKDFPDLF 699 CK L YL + P F Sbjct 1834 CKSLKYLVDECPFAF 1848 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 1182 to 1858 Score:490 bits(1261), Expect:4e-153, Method:Compositional matrix adjust., Identities:282/693(41%), Positives:396/693(57%), Gaps:46/693(6%) Query 37 KTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNG 96 KT+ +ETP EW L K PSIL D+RL + YDPF G+ KYA+ G + Sbjct 1182 KTNLVETPKEWHLGTEKTKEPSILSSTDLRLG---DKQYDPFVGGIQKYAEPMGILDDEV 1238 Query 97 LDRVCESIAETWHDASDGFE--FGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKP 154 L V I E W D D E F VDL+ A+NG+E MEY + + ++TSEG+P+ L RK Sbjct 1239 LRHVATDIVEEWFDCVDPQEDTFEEVDLQVAINGLEGMEYMERVPMATSEGFPHILTRKS 1298 Query 155 GEKGKARYVEGEPGNLEITDERILADIH----WFEEISKTQVPDLYCIECVKDERLPVRK 210 GEKGK R+V G+ EI D +H EE VP L IEC KDE+LP+RK Sbjct 1299 GEKGKGRFVYGDG---EIFDLIPGTSVHEAYLTLEETCADTVPALVGIECPKDEKLPLRK 1355 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLL 270 + ++PK+R FTVLPM YNL +R+KFL FV FIMK R L CQVGINPY +W ++A LL Sbjct 1356 IYEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLL 1415 Query 271 EKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGR 330 EKGN+ILCCDYS FDG L K +M ++EM + + G + ++Q NL++ACCSRYA+C Sbjct 1416 EKGNNILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMACCSRYALCKG 1475 Query 331 VLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETE---SLIRDHFDTYVAMVVYGD 387 ++RVE GIPSGFPLTVI NSI NE+L++Y+Y K + + I F T+V MV YGD Sbjct 1476 EVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGD 1535 Query 388 DNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENA 447 DNL+SV AI+ F+G L F+ GI +TDG DKT + FR +EDCDFLKR FK+ + Sbjct 1536 DNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKES 1595 Query 448 DGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLGSPEKAAAFRREVISK 507 D W G +E LW QLH+V +E EAY+ N N++REL+L P +AA RR+ I Sbjct 1596 DVVWVGPEEKESLWAQLHYVTTNNLEKHEAYLVNVVNVIRELYLHDPREAAELRRKAIQN 1655 Query 508 LKWVE--PQRLLTISQVALFHNEQMNGEHPFVEACHQLENLELMAPLEPGMLPIKTQ--- 562 + +++ P+ L T++ + F+N M + FV++ L++L L P L + Sbjct 1656 VDFLKENPKDLPTMAAIKEFYN--MQRQQQFVDSNDNLDSL-----LNPDFLFVAPHRKM 1708 Query 563 -----EIMPGLFV-----ASEKNFTGNFDDYFTISITTNRKFEDG----KGFQIIFPYGA 608 E++P ++ A TG D I + N D K I +PYG Sbjct 1709 HEAEMELVPKWYLRDLGKAPINVLTGEAD---RICVLVNASIPDHLLPEKVVNISWPYGP 1765 Query 609 GRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKG--NKMLFISQSSVIPAYVFAIMLYRSV 666 GRGGLP+ + + N+ A+ K + + + +++ + +P + I+ + Sbjct 1766 GRGGLPTHGWAQANLYNPNSAVVKKLRTLVNQNPDDRVDICFRHDAVPVAIATIIFLVHL 1825 Query 667 DRLPRALSNKALTSALGICKKLSYLPKDFPDLF 699 ++ +N+ LT + K L +LPK+ +F Sbjct 1826 GKVKGRSANEYLTKIIDSAKSLKFLPKECDIIF 1858 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine fanleaf virus] Sequence ID: P29149.1 Length: 2284 Range 1: 1475 to 2110 Score:353 bits(905), Expect:3e-104, Method:Compositional matrix adjust., Identities:229/650(35%), Positives:337/650(51%), Gaps:21/650(3%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPF 78 G + VG + KTSF++ P E P K P+IL D RL GT + Y P Sbjct 1475 GYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDPKQPAILSAEDERLKGTIHEGYTPL 1534 Query 79 AVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDAL 138 GM K+A+ E LD V + +TW+D + E + L+ A+NG + EYFD L Sbjct 1535 RDGMKKFAEPMYLLEEKLLDEVAGDMVQTWYDPGEFLE--DISLDQAINGDMDEEYFDPL 1592 Query 139 VLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLE-ITDERILADIHWFEEISKTQVPDLYC 197 V+ TSEGYP LDRKPGEKGKAR+ GEPGN + + EE SKT++P L Sbjct 1593 VMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRAFVAGCNPEKAYYQLEEDSKTKIPSLVS 1652 Query 198 IECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINP 257 IE KDERL R I P +RLF+VLP++YNL +R KFL+F R +MK+R LPCQVGINP Sbjct 1653 IETPKDERLK-RSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVGINP 1711 Query 258 YSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNL 317 YSR+W + RL E + CDY FDG + + I+ IA+M + + R Q KNL Sbjct 1712 YSREWTDLYHRLGELSDVGYNCDYKAFDGLITEQILSTIADMINAGYRDPVGNR-QRKNL 1770 Query 318 MLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFD 377 +LA C R +ICG +Y E GIPSG LTV++NSI E+L++Y + K + ++ FD Sbjct 1771 LLAICGRLSICGNQVYATEAGIPSGCALTVVLNSIFKELLMRYCFKKI--VPPVYKECFD 1828 Query 378 TYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCD 437 V ++ YGDDN+ +V++++ F G+ L M LG+ +TDG DK+ I R + + + Sbjct 1829 RCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELE 1888 Query 438 FLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWL-GSPEK 496 FLKR F ++ G + + + + L ++++ +M + + N N L EL+L G Sbjct 1889 FLKRGFVRSSGGMINAPLEKLSIMSSLVYIRSDGSDMLQKLLDNVNTALVELYLHGDRTY 1948 Query 497 AAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPF-----VEACHQLENLELMAP 551 + R KL + L T Q FH Q +GE + +E H + Sbjct 1949 FESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISH---GAAFASF 2005 Query 552 LEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGFQIIFPYGAGRG 611 + ++ +I PGL +A K + ++S D F++ P G G G Sbjct 2006 TQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLP---GDRNVFKLDLPCGDGIG 2062 Query 612 GLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFAIM 661 LPSK + +RK + + K+ ++ ++ + I A+ A + Sbjct 2063 RLPSKCSILN--LRKPGLVMRLCKRAQDEKKTLVIRDERPYIGAWAVACI 2110 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Arabis mosaic virus strain NW] Sequence ID: Q6W8W5.1 Length: 2284 Range 1: 1474 to 2067 Score:348 bits(894), Expect:1e-102, Method:Compositional matrix adjust., Identities:220/609(36%), Positives:318/609(52%), Gaps:25/609(4%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPF 78 G + VG + + KT+F++ P E P K P+IL D RL GT + Y P Sbjct 1474 GYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSAEDERLIGTVHEGYTPI 1533 Query 79 AVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDAL 138 GM K+A+ + LD V + TW DA + E P+ + A+NG EYFD + Sbjct 1534 REGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGEILEDVPLSI--AINGDVEEEYFDPI 1591 Query 139 VLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITD----ERILADIHWFEEISKTQVPD 194 + TSEGYP L RK GEKGKAR+ GEPG E ER + EE KT++P Sbjct 1592 AMDTSEGYPEVLQRKNGEKGKARFFVGEPGAREFVPGCGPERAYLSL---EEECKTRIPS 1648 Query 195 LYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVG 254 L IE KDERL R I+ P +RLF+VLP++YNL +R KFL+F R +MK+R LPCQVG Sbjct 1649 LVSIETPKDERLK-RSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVG 1707 Query 255 INPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQT 314 INPYSR+W + RL EK + CDY FDG + + I+ +A M N +Q Sbjct 1708 INPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQILAVVATMI-NAGFRNPVSNQQR 1766 Query 315 KNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRD 374 NL++A R +ICG +Y E GIPSG LTV++NSI NE+L++Y Y K + R+ Sbjct 1767 SNLLMAISGRLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKKI--VPPIYRE 1824 Query 375 HFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIE 434 FD V ++ YGDDN+ +VS++I + F G+ L M NLG+ +TDG DK+ I R + Sbjct 1825 CFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLL 1884 Query 435 DCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLGSP 494 + +FLKR FK+ G + + + L ++++ +M + + N N L EL+L Sbjct 1885 ELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDNVNTALVELYLHQD 1944 Query 495 -EKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGE-----HPFVEACHQLENLEL 548 E + + R + KL + L T + +FH Q++GE +E H Sbjct 1945 REYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSH---GASF 2001 Query 549 MAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGFQIIFPYGA 608 + ++ ++ +I PGL ++ K + ++S D ++ G Sbjct 2002 ASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLP---GDINAVKLTLKCGD 2058 Query 609 GRGGLPSKA 617 G G LPSKA Sbjct 2059 GIGRLPSKA 2067 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Blackcurrant reversion virus] Sequence ID: Q8V5E0.1 Length: 2094 Range 1: 1438 to 2021 Score:311 bits(797), Expect:5e-90, Method:Compositional matrix adjust., Identities:203/601(34%), Positives:311/601(51%), Gaps:35/601(5%) Query 55 KIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDG 114 K P+IL K D R+ E YDP GM K++ + N + V + I E+WHD Sbjct 1438 KQPAILSKDDPRIP--EGTSYDPLIDGMAKFSHPMAVLDENVCNEVAQDIVESWHDCFQD 1495 Query 115 FEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEP-GNLEIT 173 + V E A+NG M+Y + L +SEGYPY RKPGE GK R+ E +P L+ Sbjct 1496 LQ--DVSDEIAINGSTEMDY-EPFNLQSSEGYPYVTQRKPGESGKIRFFEMDPYTGLKSL 1552 Query 174 DERILADIHWFEEISK---TQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLA 230 L + +E + + T VP++ CIE KDE LP+RK+ +PK+RLF++LP+ +NL Sbjct 1553 IPNTLPAMR-YEALQRDCFTSVPEMVCIETPKDECLPLRKICIKPKTRLFSILPLEFNLL 1611 Query 231 IRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPK 290 +RKKFL+F + RD LP QVG+NPYSR+WG++ RL + + + CDY+ FDG L Sbjct 1612 LRKKFLHFSSSLQMHRDTLPTQVGVNPYSREWGELLQRLRAQSSVAINCDYASFDGLLTG 1671 Query 291 CIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVN 350 I+ KI M + + + A + Q NL+++ +R +ICG +Y V GIPSG LTV++N Sbjct 1672 QILEKIGTMINKMYIGSEASKIQRLNLLMSIVNRKSICGARVYEVRAGIPSGCALTVLLN 1731 Query 351 SILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFM 410 SI NE LI++ W+ + R+ F YV +++YGDDNLI+V FNG + + Sbjct 1732 SIFNEFLIRFV-WRT-TIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRL 1789 Query 411 CNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAK 470 ++ + +TDG DKT IE + + DFLKR+F++ DGT + ++ L V Sbjct 1790 ADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMG 1849 Query 471 KVEMSEAYISNCNNILRELWLGSPEKAAAFRREVISKLK-WVEPQRLLTISQVALFHNEQ 529 + A +N +N L EL+L E R+ K WV L + + FH Q Sbjct 1850 AGSIHIALQNNVHNALLELYLHGNETWFNHLRDFYRKSHAWVN---LPSWREAFAFHQGQ 1906 Query 530 MNGEHPFVEACHQLENLELMAPLEPGMLPIK---------TQEIMPGLFVASEKNFTGNF 580 ++G P+ +Q+ ++ P++ G L + + +++ K + Sbjct 1907 ISGVTPWTP--YQMFDV----PVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDP 1960 Query 581 DDYFTISITTNRKFEDGKGFQIIFPYGA-GRGGLPSKAFM---EQNVIRKGCAIQKAFKQ 636 + F +S T R + G G Y G G LPS+ ++ + + R I+KA Sbjct 1961 EHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAEIRKAHAS 2020 Query 637 G 637 G Sbjct 2021 G 2021 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Beet ringspot virus] Sequence ID: P18522.1 Length: 2264 Range 1: 1477 to 2112 Score:290 bits(742), Expect:9e-83, Method:Compositional matrix adjust., Identities:212/649(33%), Positives:318/649(48%), Gaps:51/649(7%) Query 43 TPIEWQLNRPCG---KIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDR 99 P+ L PC K P++L D R N P K+ E LD Sbjct 1477 VPVPQSLRVPCDVPIKEPAVLTNADKRCPAGVNP---PVTALKKKFEHPMKELEQEILDE 1533 Query 100 VCESIAETWHDASDGFEFGPVDLEAALNGI----ENMEYFDALVLSTSEGYPY-RLDRKP 154 V I ETW+D D + L A+NGI E E + V+ TS GYPY + +R Sbjct 1534 VATDILETWYDCEDHV-LNDIPLVVAINGIPADSEEAE-LENFVMKTSPGYPYFKNNRAE 1591 Query 155 GEKGKARYVE-GEPGNLEITDERILADIHW-FEEISKTQVPDLYCIECVKDERLPVRKVI 212 KGK+ Y E E G L++ + + A +H E +K +VP+L IEC KDE LP RK I Sbjct 1592 KLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVVIECTKDELLPERK-I 1650 Query 213 KEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE- 271 K RLF ++P+ YNL +R+K F +F+ R VLPCQVG NPYSR+WG + +RL+ Sbjct 1651 KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNPYSREWGHMLNRLMRP 1710 Query 272 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGAEREQTKNLMLACCSRYAIC 328 K N + CDYS FDG L ++ IA+M + + GE+ ++ Q N+++A RYA Sbjct 1711 KTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQRYNMLMALVGRYAFV 1770 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 G +Y+V G+PSGF LTV+VNS+ NEILI+YAY K R+ F+ V ++VYGDD Sbjct 1771 GPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE--RNRFNQVVCLLVYGDD 1828 Query 389 NLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENAD 448 NLISVS +I+S F G + + +K+TDG DK IE ++ + DFLKRKF + + Sbjct 1829 NLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDN 1888 Query 449 GTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRELWLGS 493 G + ++ L+++ K V++ E I N N L EL+L + Sbjct 1889 GIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHN 1948 Query 494 PEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNGEHPF--VEACHQLENLELMAP 551 + + R+ K + + T + FH+ Q G + + + L+ Sbjct 1949 DPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKF 2008 Query 552 LEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGK-GFQIIFPYGAGR 610 + K L VA ++ +D+ I + + G G + YG+G Sbjct 2009 MHVSEQGNKAHFYTEMLGVAG-PHYKPQENDF----IVSTEPLKMGVCGEHVPIQYGSGV 2063 Query 611 GGLPSKAFM------EQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVI 653 GGLP+K ++ Q + G I + +E G +++F+S + + Sbjct 2064 GGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYV 2112 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=NTP-binding protein; Short=NTB; AltName: Full=membrane-binding protein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tomato black ring virus (strain MJ)] Sequence ID: Q8B8X3.1 Length: 2266 Range 1: 1479 to 2108 Score:289 bits(740), Expect:2e-82, Method:Compositional matrix adjust., Identities:220/654(34%), Positives:328/654(50%), Gaps:73/654(11%) Query 43 TPIEWQLNRPCG---KIPSILVKGDVRLA-GTENADYDPFAVGMTKYAKEAGPFEPNGLD 98 P+ L PC K P++L K D R G + P A K+ + E LD Sbjct 1479 VPVPESLRVPCDVPVKEPAVLTKDDPRCPIGVD----PPRAALKKKFTQPMMELEQEILD 1534 Query 99 RVCESIAETWHDASDGFEFGPVDLEAALNGI----ENMEYFDALVLSTSEGYPY-RLDRK 153 V I ETW+D D + L A+NGI E E + V+ TS GYPY + +R Sbjct 1535 EVATDILETWYDCEDHV-LSDISLSVAINGIPADSEEAE-LENFVMKTSPGYPYFKNNRA 1592 Query 154 PGEKGKARYVE-GEPGNLEITDERILADIHW-FEEISKTQVPDLYCIECVKDERLPVRKV 211 KGK Y E E G+L++ + A++H E +K +VP+L IEC KDE LP RK Sbjct 1593 EKLKGKHAYFEEAEDGSLQLKKGGMAAELHENLVEFTKNEVPELVVIECTKDELLPERK- 1651 Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE 271 IK RLF ++P+ YNL +R+K F +F+ R LPCQVG NPYSR+WG + +RL+ Sbjct 1652 IKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVGTNPYSREWGHMLNRLMR 1711 Query 272 -KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGAEREQTKNLMLACCSRYAI 327 K N + CDYS FDG L ++ IA M + + GE+ ++ Q N+++A RYA Sbjct 1712 PKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAF 1771 Query 328 CGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGD 387 G+ +Y+V G+PSGF LTV+VNS+ NEILI+YAY K R+ F + V ++VYGD Sbjct 1772 VGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPE--RNRFGSTVCLLVYGD 1829 Query 388 DNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENA 447 DNLISVS +I+S F G + + +K+TDG DK IE ++ + DFLKRKF + Sbjct 1830 DNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLD 1889 Query 448 DGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRELWLG 492 +G + ++ L+++ K V++ E + N N L EL+L Sbjct 1890 NGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLH 1949 Query 493 SPEKAAAFRREVISKLKWVEPQRL-LTISQV------ALFHNEQMNGEHPF-----VEAC 540 + A F+R ++ QRL L +SQ+ FH+ Q G + ++ Sbjct 1950 N--DVAEFQR-----VRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHM 2002 Query 541 HQLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDG-KG 599 ++ M E G E++ G+ K G+F I +N+ + G +G Sbjct 2003 SGVDFKRFMHMSEQGNKAHFYTEML-GVSGPHYKPQEGDF-------IVSNQPLKPGVQG 2054 Query 600 FQIIFPYGAGRGGLPSKAFM------EQNVIRKGCAIQKAFKQGLEKGNKMLFI 647 + +G G GGLP+K ++ Q KG I ++ +E G +++F+ Sbjct 2055 EYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFM 2108 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine chrome mosaic virus] Sequence ID: P13025.1 Length: 2252 Range 1: 1445 to 2096 Score:281 bits(718), Expect:1e-79, Method:Compositional matrix adjust., Identities:215/669(32%), Positives:329/669(49%), Gaps:55/669(8%) Query 23 VGIISPEHTVGSGGKTSFLETPIEWQLNRPCG---KIPSILVKGDVRLAGTENADYDPFA 79 VG +SP+ KT+ ++ P L PC K PSI+ K D R A+ DP Sbjct 1445 VGHVSPKEAPTMPKKTNSVQVP--QALRVPCDLPIKEPSIISKNDPRCP----ANVDPPK 1498 Query 80 VGMTK-YAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGI----ENMEY 134 M K + + + LD + + ETW+D D + L A+NGI E+ E Sbjct 1499 AAMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSI-LSDIPLATAINGIPAGCEDAE- 1556 Query 135 FDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHW-FEEISKTQVP 193 + V+ TS GYPY ++ G+ + E E G+L++ + A+++ + +K +VP Sbjct 1557 LENFVMKTSPGYPYFKNKGLGKGKHPYFEECEDGSLKLKEGSQAAELYENMAQFAKEEVP 1616 Query 194 DLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQV 253 +L IEC KDE LP RK+ P RLF ++P+ YNL +R K F F+ R LPCQV Sbjct 1617 ELVVIECPKDELLPARKIKVGP-CRLFEIMPLHYNLLLRVKTCAFTAFLQHNRHRLPCQV 1675 Query 254 GINPYSRQWGKVADRLLE-KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGA 309 G NPYSR+WG + +RL K N + CDYS FDG L ++ +A+M + + GE+ Sbjct 1676 GTNPYSREWGHLLNRLRRVKTNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEV 1735 Query 310 EREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETE 369 + Q N+++A C RYA+ G +Y+V G+PSGF LTV++NSI NEILI+YAY T Sbjct 1736 MQAQRLNMIMALCGRYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTP 1795 Query 370 SLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIE 429 ++ F V ++VYGDDNLISVS A++S F G + + IK+TDG DK IE Sbjct 1796 E--KNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIE 1853 Query 430 FRTIEDCDFLKRKFKENAD-GTWSGVMAEEHLWPQLHFVKAKK---------------VE 473 + + DFLKRKF + + G + + ++ LH++ +K V+ Sbjct 1854 AKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVD 1913 Query 474 MSEAYISNCNNILRELWL-GSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNG 532 + E I N N L EL+L E+ R I++L ++ + T + FH+ Q G Sbjct 1914 VVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLP-MQVDQFRTWAFCEAFHSAQQTG 1972 Query 533 --EHPFVEACHQLENLELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITT 590 H + L E + K P L V ++ D+ ++ Sbjct 1973 MLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCG-PHYKPKEQDFLVSTL-- 2029 Query 591 NRKFEDGKGFQIIFPYGAGRGGLPSKAFME------QNVIRKGCAIQKAFKQGLEKGNKM 644 + G+G I G G GGLP+ +++ Q G A K + +E+G ++ Sbjct 2030 --PIKQGEGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRL 2087 Query 645 LFISQSSVI 653 +F+S + + Sbjct 2088 VFMSAAPYV 2096 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Tomato ringspot virus (isolate raspberry)] Sequence ID: P29150.2 Length: 2197 Range 1: 1503 to 2149 Score:263 bits(671), Expect:2e-73, Method:Compositional matrix adjust., Identities:200/667(30%), Positives:319/667(47%), Gaps:39/667(5%) Query 19 GCKAVGII-SPEHTVGSGGKTSFLETPIEWQLNRPCG-KIPSILVKGDVRLAGTENADYD 76 G VG I P T GGKT + + P KIPSIL K D R+ YD Sbjct 1503 GVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRIPEAYKG-YD 1561 Query 77 PFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFD 136 P M K+ + + + L+ V + + ++D D +NG + + Sbjct 1562 PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQTTLRIMSDD--EVINGSDFGFNIE 1619 Query 137 ALVLSTSEGYPYRLDRKPGEKGKARYVE---GEPGNLE-----ITDERILADIHWFEEIS 188 A+V TSEGYP+ L R+PGEKGKAR++E +PG+ + + + + + E+ + Sbjct 1620 AVVKGTSEGYPFVLSRRPGEKGKARFLEELEPQPGDTKPKYKLVVGTEVHSAMVAMEQQA 1679 Query 189 KTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDV 248 +T+VP L ++ KDERL KV+++PK+R F VLPM YNL +RK + R Sbjct 1680 RTEVPLLIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHR 1739 Query 249 LPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETG 308 L C VG NPYSR W + RL EK + L CDYSRFDG L V I + + + Sbjct 1740 LACAVGTNPYSRDWTDIYQRLAEKNSVALNCDYSRFDGLLNYQAYVHIVNFINKLYND-- 1797 Query 309 AEREQTK-NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFE 367 E + NL++A R+++CG+ ++ V G+PSG LTVI+NS+ NE+LI+Y Y Sbjct 1798 -EHSIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYR--IT 1854 Query 368 TESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVG 427 + ++F V ++VYGDDNLIS+ FNG + + + +TDG DK Sbjct 1855 VPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPV 1914 Query 428 IEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILR 487 + + ++ DFLKR F+ +DG + + ++ L+++ + + ++ N LR Sbjct 1915 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINPQGNILKSLFL-NAQVALR 1973 Query 488 ELWL-GSPEKAAAFRREVISKLKWVEPQRLLTISQ---VALFHNEQMNGEHPFVEACHQL 543 EL+L G E+ A R ++++ L++ Q A FH+EQ + P+ + Sbjct 1974 ELYLHGDVEQFTAVRNFYVNQIG----GNFLSLPQWRHCASFHDEQYSQWKPW----SPV 2025 Query 544 ENLELMAP----LEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKG 599 + LE+ P L+ + L VA + D Y +S+T+ + E G Sbjct 2026 KFLEVDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLY 2085 Query 600 FQIIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAYVFA 659 F + YG G G ++A + K + + + +G ++F + + + A Sbjct 2086 FPV--DYGEGTGQQATEASIRAYRRLKDHRV-RHMRDSWNEGKTIVFRCEGPFVSGWAAA 2142 Query 660 IMLYRSV 666 I SV Sbjct 2143 ISFGTSV 2149 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Raspberry ringspot virus strain cherry] Sequence ID: Q6W8W4.1 Length: 2367 Range 1: 1687 to 2227 Score:263 bits(671), Expect:2e-73, Method:Compositional matrix adjust., Identities:176/551(32%), Positives:266/551(48%), Gaps:27/551(4%) Query 134 YFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQV- 192 +FD L L+TSEGYP LDR G KGK R+ EG + + L D+ + I +T + Sbjct 1687 FFDGLDLTTSEGYPLFLDRPAGAKGKERFFEGSENQKFLIPDCPL-DVQLKKGIEETHLG 1745 Query 193 -PDLYCIECVKDERLPVRKVIKE---PKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDV 248 P L E KDE L KV+ P +RLF++ P YN+ +R+ F+ + KRR Sbjct 1746 TPQLIIKESAKDELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYIAESVRKRRRT 1805 Query 249 LPCQVGINPYSRQWGKVADRLLEKGNS-ILCCDYSRFDGFLPKCIMVKIAEMFSNIVGET 307 L QVGI SR+W +A RL K N + CCDYS+FDG + I+ I ++ + Sbjct 1806 LSSQVGIVVGSREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYERMFSGN 1865 Query 308 GAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFE 367 + +NL++ C+R +ICG +YRVE G+PSGF LTV NSI NEIL++ AY Sbjct 1866 DGMSQFRQNLLMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAY----- 1920 Query 368 TESLI----RDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMC-NLGIKVTDGVD 422 SL+ R F V ++VYGDDN++ + I S FNGN + +M LGIK+TDG D Sbjct 1921 -RSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEELGIKITDGAD 1979 Query 423 KTKVGIEFRTIEDCDFLKRKFKENAD-GTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISN 481 K I R +E C+FLKR ++++ G + + E ++ L +V+ + + + N Sbjct 1980 KLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYVRLQNYDWQAPLLQN 2039 Query 482 CNNILRELWLGSPEKAAAFRREVISKL-KWVEPQRLLTISQVALFHNEQMNGEHPFVEAC 540 L E L P+ A + + KWVE L T Q NG+ F A Sbjct 2040 VQGSLYEASLHGPDMHARIYKHFATHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPAS 2099 Query 541 HQLENL----ELMAPLEPGMLPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFED 596 Q+ ++ + L P + ++ P + + + N D F + + K Sbjct 2100 AQMGHVFSQQTEIQELSQSQNPKRCFQLHPKIHICGPGH---NEQDCFYVDVRVKGKITK 2156 Query 597 GKGFQIIFPYGAGRGGLPSKAFMEQNVIRKGCAIQKAFKQGLEKGNKMLFISQSSVIPAY 656 GKGF + AG G L + + C ++ ++G + F +I A+ Sbjct 2157 GKGFHHAPVFSAGSGQLGTVKWASSFRSSSACPMRDLAVDAFKRGECVYFRDNGELINAW 2216 Query 657 VFAIMLYRSVD 667 + AI S++ Sbjct 2217 LAAINFGMSIN 2227 Range 2: 1490 to 1603 Score:54.3 bits(129), Expect:4e-06, Method:Compositional matrix adjust., Identities:37/117(32%), Positives:56/117(47%), Gaps:5/117(4%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNR-PCGKIPSILVKGDVRLAGTENA-DYD 76 G +G + H + KT F+ P ++ ++ PC KIP++L D RLA YD Sbjct 1490 GYSKLGWLDRRHQPHNSEKTEFVPIPEKYHMDDVPC-KIPAVLSAKDPRLADIPQCMGYD 1548 Query 77 PFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENME 133 P+ GM K+A + L VC+ IA+ +HD G V ++ A+NG E Sbjct 1549 PYKQGMEKFAHPMQEIDEQLLATVCDEIAQEFHDV--GVRGRMVSMDEAINGHHKYE 1603 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tobacco ringspot virus strain Bud Blight] Sequence ID: Q88893.1 Length: 2304 Range 1: 1535 to 2146 Score:258 bits(659), Expect:8e-72, Method:Compositional matrix adjust., Identities:202/631(32%), Positives:302/631(47%), Gaps:58/631(9%) Query 55 KIPSILVKGDVRLAGTENADYDPFAVGMTKYAK----------EAGPFEPNGLDRVCESI 104 KIPS+LV D R GT DP V M K+ + G E + ++VC+ I Sbjct 1535 KIPSVLVSDDPRTVGTPVEGKDPVLVAMEKFYEPMTDFTEEEVRPGQTEVSLFEQVCDDI 1594 Query 105 AETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVE 164 +TW DA G EF V+ + +NG ++ FD L++ TSEGYPY L+R GEKGK RY E Sbjct 1595 VQTWFDA--GAEFEDVEDDVVINGDDD---FDKLIMDTSEGYPYVLERTHGEKGKTRYFE 1649 Query 165 GEPGNLEIT-DERILADIHWFEEISKTQ--VPDLYCIECVKDERLPVRKVIKEPKSRLFT 221 G PG + + D H +E + + +P++ CIEC KDE L RKV+++ +R F Sbjct 1650 GGPGAYTLKPGTSVYNDYHKLQEEVQVEGGIPEMVCIECPKDELLVERKVLQKLGTRNFE 1709 Query 222 VLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDY 281 +L + N+ RKKFL++ F+ R LPCQVGI R+WG + DRL K + CDY Sbjct 1710 ILELPKNMLFRKKFLHWALFLSDMRWCLPCQVGIVVQGREWGLLMDRLAAKNSVAYNCDY 1769 Query 282 SRFDGFLPKCIMVKIAEM----FSNI--------VGETGAEREQTK--NLMLACCSRYAI 327 S+FDG + ++ I +M +SN GE Q NL+++ R + Sbjct 1770 SKFDGLMSCQVLDAIGKMVNKCYSNANPNLKKKGKGELPGSPPQLARYNLLMSIFGRKCL 1829 Query 328 CGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGD 387 ++ V GI G LTV++NS+ NEILI+Y Y + R F+T+V +VVYGD Sbjct 1830 ARSQVFEVRGGIRRG-ALTVLLNSVFNEILIRYVYKTVIPSPEFNR--FETFVTLVVYGD 1886 Query 388 DNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENA 447 DNLI+V ++ F G + + I +TDG DK +E + + DFLKR F + Sbjct 1887 DNLIAVDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSD 1946 Query 448 DGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELWLGSP-EKAAAFRREVIS 506 G + ++ L ++++ + N N L+EL+ E+ R + Sbjct 1947 SGQVMPALDRTCIYSSLLYLRSADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLE 2006 Query 507 KLK-WVEPQ-RLLTISQVALFHNEQMNGEHPFVEACHQLENL------ELMAPLEPG--M 556 +L W Q RLL +Q A + G P L+ L M P P Sbjct 2007 RLPMWRNGQHRLLDWNQCAEHWRARYTG-CPSDNPAGVLDMLVDPRCKSFMLPAGPANWS 2065 Query 557 LPIKTQEIMPGLFVASEKNFTGNFDDYFTISITTNRKFEDGKGFQIIFPYGAGRGGLPSK 616 +PI + +FV K F+ + Y ++ NR G QI + A +G +P+ Sbjct 2066 MPIADR-----IFVCGPK-FSASGPSY---TLCFNRLAAGETGVQIKPVHAATQGAMPTA 2116 Query 617 AFMEQ-NVIRKGCAIQKAFKQGLEKGNKMLF 646 F+E I+K ++ A E G+ + F Sbjct 2117 KFVESFRSIKKRPELELAI-SAYESGSNLYF 2146 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Cycas necrotic stunt virus] Sequence ID: Q8QVV0.1 Length: 2336 Range 1: 1505 to 2184 Score:245 bits(626), Expect:1e-67, Method:Compositional matrix adjust., Identities:205/696(29%), Positives:323/696(46%), Gaps:61/696(8%) Query 19 GCKAVGIISPEHTVGSGGKTSFLETPIEWQLNRPCG-KIPSILVKGDVRL-AGTENADYD 76 G +G ++ + T K + + E++++ P K PSI+ D R E D Sbjct 1505 GYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSIISAEDPRCPKDAEGKPID 1564 Query 77 PFAVGM-TKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGI------ 129 P K+ E + L+ + + + + W D + V LE A+NGI Sbjct 1565 PIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDC-ESEPLCDVPLEVAINGIPGTQID 1623 Query 130 ENMEYFDA---LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEE 186 ++ E+ DA L + TS GYPY L ++PG KGK Y E P E LA +E Sbjct 1624 DDDEFEDAVECLKMRTSPGYPYVLHKEPGMKGKEAYFELAPDGTRALKEGSLA-AELYEN 1682 Query 187 I---SKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIM 243 I SK+ +P+L IEC KDE L KV K R F ++P+ YNL +R+K L F F Sbjct 1683 IVQYSKSAIPELVVIECPKDELLKTEKVNK--ACRPFEIMPLHYNLFLREKTLAFSLFQQ 1740 Query 244 KRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNI 303 + R L CQVG YS W + RL+ K + + CDYS FDG L ++ IA M +++ Sbjct 1741 RNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSSFDGLLNSQVVSCIANMINSM 1800 Query 304 VG---ETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKY 360 ET + Q N++ A R AI G+ + RV G+PSGF LTV++NS+ NEIL++Y Sbjct 1801 YHSPEETVVSKRQRYNMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRY 1860 Query 361 AYWKCFETESL--IRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVT 418 CF+ L R+ F TYV ++VYGDDNL+S ++ I+ FNG + + + +T Sbjct 1861 ----CFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNVTIT 1916 Query 419 DGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEM---- 474 DG DKT I+++T+ + DFLKR+F + G + ++ LH+V +M Sbjct 1917 DGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGG 1976 Query 475 SEAYISNCNNI----------LRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVAL 524 ++ + N + + L EL+L ++ R +K + P T + Sbjct 1977 AQLQVENVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREA 2036 Query 525 FHNEQMNGEHPFVEACHQLENLELMAPLEPGMLPIKTQEIMPGLFVASE-----KNFTGN 579 FH + G +EA + ++L E + T +I + + F Sbjct 2037 FHMSKQTG----MEAYQPAKEIDLDVGQEFARF-MHTSDIGNQVHFTRQCLVVAGPFYKP 2091 Query 580 FDDYFTISITTNRKFEDGKGFQIIFPYGAGRGGLPSKAFME------QNVIRKGCAIQKA 633 D +S T ++ E G+ + G G G LP+ A++ Q V G I Sbjct 2092 TPDQLLVSTTPLKQGES--GYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGN 2149 Query 634 FKQGLEKGNKMLFISQSSVIPAYVFAIMLYRSVDRL 669 + +E G ++F S++ + A+M + +L Sbjct 2150 VRSHIESGKSLVFRSEAPYVAGNA-ALMAFGQAAKL 2184 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Cherry rasp leaf virus isolate potato] Sequence ID: Q6EWG9.1 Length: 2250 Range 1: 1577 to 2038 Score:228 bits(581), Expect:9e-62, Method:Compositional matrix adjust., Identities:154/472(33%), Positives:245/472(51%), Gaps:34/472(7%) Query 37 KTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN- 95 KTS + + I ++ P+IL + D RL + N ++D F GM KYA EA + + Sbjct 1577 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSLDEDL 1636 Query 96 -----GLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRL 150 LDRV I E H D + + NGIE+ Y + +V+ T+EG+P+ Sbjct 1637 EVFEDALDRVFLEIPE--HACED------LTNDQVCNGIEDDPYAEGIVMQTAEGFPFCT 1688 Query 151 DRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQ--VPDLYCIECVKDERLPV 208 R G GK+ G PG+ I +LA+ +E++ ++ L I+ KDE++ Sbjct 1689 QRPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDS 1748 Query 209 RKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADR 268 KV +PK+RLFT+LP+ YN+ +RK FL+ V IM + + +P +VGI+ S +W + + Sbjct 1749 SKVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQ 1808 Query 269 LLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLML--------- 319 L KG + DYSRFDG P+ ++ I + + + NL + Sbjct 1809 LRSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLL 1868 Query 320 --ACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETE---SLIRD 374 +RY + L+ V +GIPSGFPLTVIVNS++N I ++Y K + E SL Sbjct 1869 TDMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPL 1928 Query 375 H-FDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKT-KVGIEFRT 432 H F VA YGDDNL+SV++ I+ KFN + + + G+ + +G DK ++ F Sbjct 1929 HSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYP 1988 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNN 484 +E DFLKRKF + G + ++ +LH+++ K + ++A + NC++ Sbjct 1989 LEKVDFLKRKFV-HYQGHVVAPLNPVNITERLHWIR-KGLGEADATLENCSS 2038 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Parsnip yellow fleck virus (isolate P-121)] Sequence ID: Q05057.1 Length: 3027 Range 1: 2261 to 2732 Score:199 bits(505), Expect:6e-52, Method:Compositional matrix adjust., Identities:147/479(31%), Positives:239/479(49%), Gaps:26/479(5%) Query 23 VGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGM 82 VG PE T S K++ + + I+ + R P+IL DVRL EN YDP G+ Sbjct 2261 VGRTFPETTPKSITKSTIVPSLIQPYMPRKPLTEPAILDPRDVRLG--ENR-YDPMIDGI 2317 Query 83 TKYAKEAGPFEPNGLDRVCESIAETWHD-----ASDGFEFGPVDLEAALNGIENMEYFDA 137 KY ++A P + + +++ ES+A D +G+ + + +NGI+ +EY++ Sbjct 2318 KKYEEQARPIKISWRNQIIESMAAQMQDWETFMVREGYMTMDLPMSVVINGIDGVEYYEP 2377 Query 138 LVLSTSEGYPYRLDRKPGEKGKARYVEG-EPGNLEITDERILADIHWFEEISKTQVP-DL 195 L +STSEGYP L+R GK E E G I ++ A + ++ P L Sbjct 2378 LNMSTSEGYPLILNRPKDAHGKEYLFETMESGERRIKSAKLEAHYESYGHALQSTEPFPL 2437 Query 196 YCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGI 255 CIEC KDER + K+ ++PK+RLF++LP+ +N+ R+ FL+F F+M R VGI Sbjct 2438 ICIECPKDERRALDKIYEKPKTRLFSILPVEFNMHARRLFLDFNVFVMANRHKHGIMVGI 2497 Query 256 NPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGE-TGAEREQT 314 NP+SR+W +A L D++ FDG ++E+ + G ER+ Sbjct 2498 NPHSREWSDLAISLASFSPYGFNGDFANFDGMFHPSSFSMVSELANIFYGNFLSTERD-- 2555 Query 315 KNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRD 374 NL +R+++ + RV G PSGFP+TVI NS +N ++ A W + +D Sbjct 2556 -NLTRMLTNRFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSA-WIMLARFNGRQD 2613 Query 375 -----HFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCN-LGIKVTDGV-DKTKVG 427 +F YV VYGDDN++++ + +N + + + G+ +TDG +K Sbjct 2614 ISHPCNFPKYVRACVYGDDNIVAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKASEA 2673 Query 428 IEFRTIEDCDFLKRKFK--ENADGTWSGVMAEEHLWPQLHFVK--AKKVEMSEAYISNC 482 + I + DFLKR FK E + + + + Q+++++ +E+ EA I N Sbjct 2674 KPYGKILEFDFLKRHFKADELIPSLFHAPLHKRSIEEQVYWIREGGNSLELLEANIENA 2732 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Satsuma dwarf virus S-58] Sequence ID: Q9WAL8.1 Length: 2081 Range 1: 1442 to 1858 Score:196 bits(499), Expect:3e-51, Method:Compositional matrix adjust., Identities:132/423(31%), Positives:213/423(50%), Gaps:15/423(3%) Query 37 KTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN- 95 KTS + + I L R P+IL K D R YDP+A K+ +E GP + + Sbjct 1442 KTSIVPSIIHDNLWRKPETEPTILGKIDDR----SPFPYDPYATIGEKFVQEVGPIDLSV 1497 Query 96 GLDR--VCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRK 153 G D V +I +W + E A+NG + Y + L LSTSEGYP + R Sbjct 1498 GSDASLVVANIGSSWKAVGKPQCPTVLTWEVAINGDAAIPYCERLPLSTSEGYPDSIQRN 1557 Query 154 PGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIE--CVKDERLPVRKV 211 GEKGK R+ + + N+ + ++ ++ E + + L CI C KDE+ +KV Sbjct 1558 FGEKGKKRFFDLKGENVRVPTPALMEELEVLERELQKEEVCLTCINTACAKDEKTAPKKV 1617 Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE 271 +PK+R+F +LP N+ IR+ + +++ +M D LP +VGIN YS W ++ R Sbjct 1618 RVQPKTRIFEILPFQINIIIRRYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLGRHTR 1677 Query 272 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRV 331 N DYS FD P+ ++ I + + + + + +N++ +RY I V Sbjct 1678 LANH-FTGDYSGFDTSTPRVLVYAIIDKINELADDGEVNQRTRRNIIRFVLNRYLISDGV 1736 Query 332 LYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRD----HFDTYVAMVVYGD 387 LY + G PSGF TV++NS++NE +K+++ + F + +YGD Sbjct 1737 LYEIHGGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGD 1796 Query 388 DNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENA 447 DN +SV+ ++S +N + NF+ +G+K+ DG KT F +E+ DFLKR+F ++ Sbjct 1797 DNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA-KTGTIKPFIPLEEVDFLKRQFVADS 1855 Query 448 DGT 450 T Sbjct 1856 GST 1858 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 2931 to 3356 Score:178 bits(452), Expect:3e-45, Method:Compositional matrix adjust., Identities:123/430(29%), Positives:200/430(46%), Gaps:22/430(5%) Query 57 PSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFE 116 PS+L D RL ++DP + KY PF + V + + + + Sbjct 2931 PSVLSAWDRRLPFPP-GEWDPMKDAVKKYGSYILPFPTEEIQEVENFLIKKFRRKENSRR 2989 Query 117 FGPVD-LEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKAR-------YVEGEPG 168 V+ LE +NGI+ +++ + + TS GYPY L R G +GK Y G P Sbjct 2990 TRNVNSLEVGINGIDGSDFWSPIEMKTSPGYPYILKRPSGAQGKKYLFEELEPYPSGRP- 3048 Query 169 NLEITDERILADIHWF-EEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSY 227 + D ++ + EE++ P + +EC+KDER + K+ ++P +R FT+L Sbjct 3049 KYAMKDPELIENYERIKEEVTSGVKPSIMTMECLKDERRKLAKIYEKPATRTFTILSPEV 3108 Query 228 NLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGF 287 N+ R+ F +F +M R QVGINP S +W + + LL DYS+FDG Sbjct 3109 NILFRQYFGDFAAMVMSTRREHFSQVGINPESMEWSDLINSLLRVNTKGFAGDYSKFDGI 3168 Query 288 LPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTV 347 I I + + + +L+ + R ICG ++ R G+PSGF +TV Sbjct 3169 GSPAIYHSIVNVVNAWYNDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTV 3228 Query 348 IVNSILNEILIKYAYWKCFETESLIRDH-----FDTYVAMVVYGDDNLISVSEAISSKFN 402 I NS +N + A W SL+ FDTY +V YGDDN++SV E +N Sbjct 3229 IFNSFVNYYFMALA-WMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSVHEEFLDVYN 3287 Query 403 GNFLVNFMCNLGIKVTDGVDKTKVGIE--FRTIEDCDFLKRKFK--ENADGTWSGVMAEE 458 + ++ + G+ TDG DK + + + I FLKR F+ E++ W + + Sbjct 3288 LQTVAAYLSHFGVTYTDG-DKNPIHMSKPYEDITKMSFLKRGFERVESSGFLWKAPLDKT 3346 Query 459 HLWPQLHFVK 468 + +L++++ Sbjct 3347 SIEERLNWIR 3356 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 2928 to 3353 Score:178 bits(452), Expect:3e-45, Method:Compositional matrix adjust., Identities:123/430(29%), Positives:200/430(46%), Gaps:22/430(5%) Query 57 PSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFE 116 PS+L D RL ++DP + KY PF + V + + + + Sbjct 2928 PSVLSAWDRRLPFPP-GEWDPMKDAVKKYGSYILPFPTEEIQEVENFLIKKFRRKENSRR 2986 Query 117 FGPVD-LEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKAR-------YVEGEPG 168 V+ LE +NGI+ +++ + + TS GYPY L R G +GK Y G P Sbjct 2987 TRNVNSLEVGINGIDGSDFWSPIEMKTSPGYPYILKRPSGAQGKKYLFEELEPYPSGRP- 3045 Query 169 NLEITDERILADIHWF-EEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSY 227 + D ++ + EE++ P + +EC+KDER + K+ ++P +R FT+L Sbjct 3046 KYAMKDPELIENYERIKEEVTSGVKPSIMTMECLKDERRKLAKIYEKPATRTFTILSPEV 3105 Query 228 NLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGF 287 N+ R+ F +F +M R QVGINP S +W + + LL DYS+FDG Sbjct 3106 NILFRQYFGDFAAMVMSTRREHFSQVGINPESMEWSDLINSLLRVNTKGFAGDYSKFDGI 3165 Query 288 LPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTV 347 I I + + + +L+ + R ICG ++ R G+PSGF +TV Sbjct 3166 GSPAIYHSIVNVVNAWYDDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTV 3225 Query 348 IVNSILNEILIKYAYWKCFETESLIRDH-----FDTYVAMVVYGDDNLISVSEAISSKFN 402 I NS +N + A W SL+ FDTY +V YGDDN++SV E +N Sbjct 3226 IFNSFVNYYFMALA-WMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSVHEEFLDVYN 3284 Query 403 GNFLVNFMCNLGIKVTDGVDKTKVGIE--FRTIEDCDFLKRKFK--ENADGTWSGVMAEE 458 + ++ + G+ TDG DK + + + I FLKR F+ E++ W + + Sbjct 3285 LQTVAAYLSHFGVTYTDG-DKNPIHMSKPYEDITKMSFLKRGFERVESSGFLWKAPLDKT 3343 Query 459 HLWPQLHFVK 468 + +L++++ Sbjct 3344 SIEERLNWIR 3353 >RecName: Full=RNA1 polyprotein; Contains: RecName: Full=Protease-cofactor; Contains: RecName: Full=Putative helicase; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Tomato torrado virus ESP/PRIToTV0301] Sequence ID: A1XIP9.1 Length: 2158 Range 1: 1124 to 1560 Score:177 bits(449), Expect:7e-45, Method:Compositional matrix adjust., Identities:141/457(31%), Positives:215/457(47%), Gaps:50/457(10%) Query 23 VGIISPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGM 82 VG + E KT+ + + ++ P PSI+ D R G +DP+ G+ Sbjct 1124 VGTLPAEQAATVPHKTTLRRSGL-FEAFGPAETAPSIISASDKRGEG-----FDPYVAGI 1177 Query 83 TKYAKEAGPFEPN----GLDRVCESIAETWHDASDGFEFG-PV--DLEAALNGIENMEYF 135 KY + A F+ + + + ++I H S FG PV + + LNG++ +YF Sbjct 1178 QKYNETAQNFDEDIARLAYEGLRQAILPVLH--SQRVPFGKPVTQNEDVVLNGVDGFDYF 1235 Query 136 DALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDER---ILADIHWFE-EISKTQ 191 D + LSTS GYPY ++ K +VE + +R I D + EI K Sbjct 1236 DGMELSTSCGYPY--NKLGMGTSKREFVEPSGDGDRVQLKRTTPIFDDWEALDVEIRKGN 1293 Query 192 VPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPC 251 +L +C KDERLP+ KV + K+RLF +LP YN+ +RK FL+F +M + LPC Sbjct 1294 FVELVTTQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPC 1353 Query 252 QVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGE-TGAE 310 +VGINP +W +A+ ++ DYS FDG P ++ + G G+ Sbjct 1354 KVGINPGGIEWTLLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSP 1413 Query 311 REQTKN--LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFET 368 ++ LM+A C Y IC ++R+ G+PSGF LTVI NS+LNE ++YA+ Sbjct 1414 DSNARHVLLMMASC-HYTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRR 1472 Query 369 ESLI--------RDHFDTYVAMVVYGDDNLISVS--------EAISSKFNGNFLVNFMCN 412 + D +VA VYGDDNL++V AI+ + +VN + Sbjct 1473 PHIAAQAIGCKPSDFNKLFVA--VYGDDNLVAVPMELHWYTLPAIAQELE---MVNVIIK 1527 Query 413 LGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADG 449 GI V +K+ + + FL R FK + G Sbjct 1528 NGIDKNMDVSSSKM----LDLSELTFLSRGFKRHRLG 1560 >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 1489 to 1861 Score:156 bits(395), Expect:3e-38, Method:Compositional matrix adjust., Identities:114/382(30%), Positives:197/382(51%), Gaps:24/382(6%) Query 123 EAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARY--VEGEPGNLEITDERILAD 180 E A+ G ++ E+ A+ S+S G+P+ DR G KGK + EGE I DE + Sbjct 1489 EEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGE----YILDEDVFEA 1544 Query 181 IHWFEEISKTQV--PDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNF 238 + + +K V P ++ ++ +KDER P+ KV + K+R+F+ PM +++ R +L F Sbjct 1545 VKTRIQNAKNGVRTPVMW-VDTLKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGF 1602 Query 239 VRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAE 298 + +M+ R +G N YS+ W K +L G ++ D+S FDG L CIM K A+ Sbjct 1603 IAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFAD 1662 Query 299 MFSNIVGETGAEREQTKN-LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEIL 357 + +N + G+E ++ L++ + ICG +Y + + PSG P T +N +N + Sbjct 1663 L-ANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMG 1721 Query 358 IKYAYWKCFE-------TESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFM 410 ++ + C + T+ + F +V++V YGDDN+I+ S+ +S FN + Sbjct 1722 LRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAF 1781 Query 411 CNLGIKVTDGVDKTKVGI--EFRTIEDCDFLKRKFK-ENADGTWSGVMAEEHLWPQLHFV 467 LG TD + K K G ++RTIED +LKRKF+ ++ W + + + ++ Sbjct 1782 EKLGFTYTDEL-KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWC 1840 Query 468 KAKKVEMSEAYISNCNNILREL 489 + +++ E NC N + EL Sbjct 1841 RG-SLDIQEGTKVNCENAIMEL 1861 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 1241 to 1726 Score:130 bits(326), Expect:9e-30, Method:Compositional matrix adjust., Identities:121/497(24%), Positives:231/497(46%), Gaps:33/497(6%) Query 32 VGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGP 91 VG +S + + I +L+ P K P++L + N ++P G+ K + Sbjct 1241 VGQAVNSSIIPSRIYGKLSVPTMK-PALL-----KPTILNNKVHNPLLSGLKKCGVDTAV 1294 Query 92 FEPNGL----DRVCESIAETWHDASDGFEFGPV-DLEAALNGIENMEYFDALVLSTSEGY 146 + + VC + ++ + ++ + E A+ G ++ E+ A+ +TS G+ Sbjct 1295 LSDDEVLSASQDVCRVMLNQYNKNLNKTKYQRILTYEEAIRGTQDDEFMCAINRTTSPGF 1354 Query 147 PYRLDRKPGEKGKARYVEGEPGNLEITDERILA---DI-HWFEEISKTQVPDLYCIECVK 202 PY K GK +++ G + T LA D+ E+ + ++ ++ ++ +K Sbjct 1355 PY-AQMKRNAPGKQQWM-GFGEEFDFTSNYALALRKDVEQLIEDCASGKISNVIFVDTLK 1412 Query 203 DERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQW 262 DER + KV K+R+F+ P + +A R+ FL F ++M R VG N YS W Sbjct 1413 DERRDIAKV-NVGKTRVFSAGPQHFVVAFRQYFLPFAAWLMHNRISNEVAVGTNVYSSDW 1471 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIA-EMFSNIVGE-TGAEREQTKNLMLA 320 ++A RL KG+ ++ D+ FDG L I+ I E+F + + E + K ++ Sbjct 1472 ERIAKRLKTKGSHVIAGDFGNFDGSLVAQILWAIFWEIFVVWLKQFIDIENSEGKRILCI 1531 Query 321 CCSRYAICGRVLYRVENGI-------PSGFPLTVIVNSILNEILIKYAYWKC---FETES 370 C ++ ++ E+ + PSG P TVI+N + N I+++ ++ + F+ Sbjct 1532 CLGLWSHLVHSVHIYEDNVYMWTHSQPSGNPFTVIINCLYNSIIMRLSWIRVMEKFQPRL 1591 Query 371 LIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEF 430 F+ YVA++ YGDDN++++ + FN + M + + TD KT ++ Sbjct 1592 KSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISEVMTEMRHEYTDEA-KTGDIVKS 1650 Query 431 RTIEDCDFLKRKFKENAD-GTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILREL 489 R +ED FLKRKF+ + + + E ++ L++ + + ++ E +SN RE+ Sbjct 1651 RKLEDIFFLKRKFRFSPELQRHVAPLKIEVIYEMLNWSR-RSIDPDEILMSNIETAFREV 1709 Query 490 WLGSPEKAAAFRREVIS 506 E+ R V++ Sbjct 1710 VYHGKEEYDKLRSAVLA 1726 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 1754 to 2156 Score:93.2 bits(230), Expect:4e-18, Method:Compositional matrix adjust., Identities:115/442(26%), Positives:182/442(41%), Gaps:55/442(12%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN 95 KT F ++PI +++ P+ + A+ DP AV ++KY+ EP Sbjct 1754 SKTLFRKSPIHHHIDKDMINFPAAM--------PFSRAEIDPMAVMLSKYSLPMVE-EPE 1804 Query 96 GLDRVCESIAETWHDAS---DGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 G V S D F +DL+ A+ G + DA+ + +S G+PY +R Sbjct 1805 GYKDVSVFFQNKVMGKSVLVDDF----LDLDMAITGAPGI---DAINMDSSPGFPYVQER 1857 Query 153 KPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKDERLPVRK 210 K + + L + LA F + DL I C KDE P+ K Sbjct 1858 LT----KRDLIWLDENGLLLGIHPRLAQRILFNTVMMENCSDLDVIFTTCPKDELRPLDK 1913 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQWGKVADRL 269 V+ E K+R P+ Y + R + + + +GI+P RQW ++ + Sbjct 1914 VL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQWDELFKTM 1971 Query 270 LEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----KNLMLACC 322 + G+ L D+S FD L ++ + + S I G G T K+L+ CC Sbjct 1972 IRFGDVGLDLDFSAFDASLSPFMIREAGRIMSEISGTPSHFGTALINTIIYSKHLLYNCC 2031 Query 323 SRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAM 382 Y V +PSG P T ++NSI+N I + Y + K F + F V + Sbjct 2032 ----------YHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFRKSPVF---FSQAVRI 2078 Query 383 VVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFL 439 + YGDD LI S I + G +V+ LG+ T DKT + + + + FL Sbjct 2079 LCYGDDVLIVFSRDIQIDNLDQIGQKIVHEFKQLGMTATSA-DKTVP--QLKPVSELTFL 2135 Query 440 KRKFKENADGTWSGVMAEEHLW 461 KR F D + +E+ +W Sbjct 2136 KRSFNLVEDRVRPAI-SEKTIW 2156 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 1754 to 2156 Score:90.1 bits(222), Expect:3e-17, Method:Compositional matrix adjust., Identities:111/449(25%), Positives:188/449(41%), Gaps:69/449(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+++ A+ DP AV ++KY+ Sbjct 1754 SKTLFRKSPIHHHIDKTMINFPAVM--------PFSKAEVDPMAVMLSKYSLPIVEEPED 1805 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + +T D F +DL+ A+ G + DA+ + +S G Sbjct 1806 YKEASIFYQNKI------VGKT--QLVDDF----LDLDMAITGAPGI---DAINMDSSPG 1850 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY ++ K + + L + LA F + DL + C KD Sbjct 1851 FPYVQEKLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1906 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y + R + + + +GI+P RQW Sbjct 1907 ELRPLEKVL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQW 1964 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1965 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALINTIIYSK 2024 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y +CG +PSG P T ++NSI+N I + Y + K F + Sbjct 2025 HLLYNCC--YHVCG--------SMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF--- 2071 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 2072 FCQALRILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSA-DKNVP--QLKP 2128 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLW 461 + + FLKR F D + +E+ +W Sbjct 2129 VSELTFLKRSFNLVEDRIRPAI-SEKTIW 2156 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 1755 to 2157 Score:89.7 bits(221), Expect:5e-17, Method:Compositional matrix adjust., Identities:110/443(25%), Positives:189/443(42%), Gaps:57/443(12%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN 95 KT F ++PI +++ P+++ A+ DP AV ++KY+ EP+ Sbjct 1755 SKTLFRKSPIHHHIDKNMINFPAVM--------PFSRAEIDPMAVMLSKYSLPIVD-EPD 1805 Query 96 GLDRVCESIAETWHDAS---DGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 V S D F +D+E A+ G + DA+ + +S GYPY ++ Sbjct 1806 DYKDVSVFFQNKILGKSPLVDDF----LDIEMAITGAPGI---DAINMDSSPGYPYVQEK 1858 Query 153 KPGEKGKARYVEGEPGNLEI---TDERILADIHWFEEISKTQVPDLYCIECVKDERLPVR 209 K +++ L + +RIL + E S D+ C KDE P+ Sbjct 1859 L--TKRDLIWLDDNGMFLGLHPRLAQRILFNTTMMENCSDL---DVVFTTCPKDELRPLD 1913 Query 210 KVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQWGKVADR 268 KV+ E K+R P+ Y + R + + + +GI+P RQW ++ Sbjct 1914 KVL-ESKTRAIDSCPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQWDQLFKT 1971 Query 269 LLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQ-------TKNLMLAC 321 ++ G+ L D+S FD L ++ + + + + G E +K+L+ C Sbjct 1972 MIRFGDVGLDLDFSAFDASLSPFMIREAGRILTEMSGAPVHFGEALINTIIYSKHLLYNC 2031 Query 322 CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVA 381 C Y +CG +PSG P T ++NSI+N + + Y + K F+ + F V Sbjct 2032 C--YHVCG--------SMPSGSPCTALLNSIINNVNLYYVFSKIFKKSPVF---FCDAVR 2078 Query 382 MVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDF 438 ++ YGDD LI S + + G +V+ LG+ T DK+ + + + + F Sbjct 2079 ILCYGDDVLIVFSRQVQIDNLDSIGQRIVDEFKKLGMTATSA-DKSVP--QLKPVSELTF 2135 Query 439 LKRKFKENADGTWSGVMAEEHLW 461 LKR F D + AE+ +W Sbjct 2136 LKRSFNLVEDRIRPAI-AEKTIW 2157 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 1755 to 2157 Score:89.0 bits(219), Expect:8e-17, Method:Compositional matrix adjust., Identities:109/445(24%), Positives:188/445(42%), Gaps:61/445(13%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN 95 KT F ++PI +++ P+++ A+ DP AV ++KY+ EP Sbjct 1755 SKTLFKKSPIHHHIDKNMINFPAVM--------PFSRAEIDPMAVMLSKYSLPIVD-EPE 1805 Query 96 GLDRVCESIAETWHDAS---DGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 V S D F +D+E A+ G + DA+ + +S GYPY ++ Sbjct 1806 DYKDVSVFFQNKILGKSPLVDDF----LDIEMAITGAPGI---DAINMDSSPGYPYVQEK 1858 Query 153 KPGEKGKARYVEGEPGNLEIT---DERILADIHWFEEISKTQVPDLYCIECVKDERLPVR 209 K +++ L + +RIL + E S D+ C KDE P+ Sbjct 1859 L--TKRDLIWLDDNGMFLGVHPRLAQRILFNTTMMENCSDL---DVVFTTCPKDELRPLD 1913 Query 210 KVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQWGKVADR 268 KV+ E K+R P+ Y + R + + + +GI+P RQW ++ Sbjct 1914 KVL-ESKTRAIDSCPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQWDQLFKT 1971 Query 269 LLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQ-------TKNLMLAC 321 ++ G+ L D+S FD L ++ + + + + G E +K+L+ C Sbjct 1972 MIRFGDVGLDLDFSAFDASLSPFMIREAGRILTEMSGAPNHFGEALINTIIYSKHLLYNC 2031 Query 322 CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVA 381 C Y V +PSG P T ++NSI+N + + Y + K F+ + F + Sbjct 2032 C----------YHVYGSMPSGSPCTALLNSIINNVNLYYVFSKIFKKSPVF---FCDAIR 2078 Query 382 MVVYGDDNLISVSEAISSKFN-----GNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDC 436 ++ YGDD LI S + +F+ G +V+ LG+ T DK+ + + + + Sbjct 2079 ILCYGDDVLIVFSRQV--QFDNLDSIGQRIVDEFRKLGMTATSA-DKSVP--QLKPVSEL 2133 Query 437 DFLKRKFKENADGTWSGVMAEEHLW 461 FLKR F D +AE+ +W Sbjct 2134 TFLKRSFNL-VDDRIRPAIAEKTIW 2157 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 1752 to 2154 Score:88.6 bits(218), Expect:1e-16, Method:Compositional matrix adjust., Identities:112/441(25%), Positives:182/441(41%), Gaps:53/441(12%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPN 95 KT F ++PI +++ P+ + A+ DP AV ++KY+ EP Sbjct 1752 SKTLFKKSPIHHHIDKDMINFPAAM--------PFSRAEIDPMAVMLSKYSLPMVE-EPE 1802 Query 96 GLDRVCESIAETWHDAS---DGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 G V S D F +DL+ A+ G + DA+ + +S G+PY ++ Sbjct 1803 GYKDVSIFFQNKIMGKSILVDDF----LDLDMAITGTPGI---DAINMDSSPGFPYVQEK 1855 Query 153 KPGEKGKARYVEGEP-GNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKV 211 + G G +RIL + E S D+ C KDE P+ KV Sbjct 1856 LTKRDLIWLHENGLLLGIHPRLAQRILFNTVMMENCSDL---DVVFTTCPKDELRPLDKV 1912 Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQWGKVADRLL 270 + E K+R P+ Y + R + + + +GI+P +QW ++ ++ Sbjct 1913 L-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DKQWDELFKTMI 1970 Query 271 EKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----KNLMLACCS 323 G+ L D+S FD L ++ + + S I G G T K+L+ CC Sbjct 1971 RFGDVGLDLDFSAFDASLSPFMIREAGRIMSEISGTPSHFGTALINTIIYSKHLLYNCC- 2029 Query 324 RYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMV 383 Y V +PSG P T ++NSI+N I + Y + K F + F V ++ Sbjct 2030 ---------YHVYGSMPSGSPCTALLNSIINNINLYYVFAKIFRKSPVF---FSQAVRIL 2077 Query 384 VYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLK 440 YGDD L+ S I + G +V+ LG+ T DKT + + + + FLK Sbjct 2078 CYGDDVLVVFSRDIQIDNLDQIGQKIVHEFKELGMTATSA-DKTVP--QLKPVSELTFLK 2134 Query 441 RKFKENADGTWSGVMAEEHLW 461 R F D + +E+ +W Sbjct 2135 RSFNLVEDRIRPAI-SEKTIW 2154 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Arizona/HAS-15/1979] Sequence ID: Q05794.2 Length: 2052 Range 1: 1588 to 1990 Score:87.4 bits(215), Expect:2e-16, Method:Compositional matrix adjust., Identities:109/449(24%), Positives:186/449(41%), Gaps:69/449(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+ + A+ DP A+ ++KY+ Sbjct 1588 SKTLFRKSPIHHHIDKTMINFPAAM--------PFSKAEIDPMAMMLSKYSLPIVEEPED 1639 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + + D F +DL+ A+ G + DA+ + +S G Sbjct 1640 YKEASVFYQNKIVGKTQLV--------DDF----LDLDMAITGAPGI---DAINMDSSPG 1684 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY ++ K + + L + LA F + DL + C KD Sbjct 1685 FPYVQEKLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1740 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y + R + + + +GI+P RQW Sbjct 1741 ELRPLEKVL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQW 1798 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1799 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALINTIIYSK 1858 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y +CG +PSG P T ++NSI+N I + Y + K F + Sbjct 1859 HLLYNCC--YHVCG--------SMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF--- 1905 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 1906 FCQALRILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSA-DKNVP--QLKP 1962 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLW 461 + + FLKR F D + +E+ +W Sbjct 1963 VSELTFLKRSFNLVEDRIRPAI-SEKTIW 1990 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 1754 to 2156 Score:87.4 bits(215), Expect:2e-16, Method:Compositional matrix adjust., Identities:110/449(24%), Positives:185/449(41%), Gaps:69/449(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+ L A+ DP A+ ++KY+ Sbjct 1754 SKTLFRKSPIHHHIDKTMINFPAAL--------PFSKAEIDPMAIMLSKYSLPIVEEPED 1805 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + +T D F +DL+ A+ G + DA+ + +S G Sbjct 1806 YKEASVFYQNKI------VGKT--QLVDDF----LDLDMAITGAPGI---DAINMDSSPG 1850 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY ++ K + + L + LA F + DL + C KD Sbjct 1851 FPYVQEKLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1906 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y + R + + + +GI+P RQW Sbjct 1907 ELRPLEKVL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQW 1964 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1965 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALINTIIYSK 2024 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y V +PSG P T ++NSI+N I + Y + K F + Sbjct 2025 HLLYNCC----------YHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF--- 2071 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 2072 FCQALRILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFRKLGMTATSA-DKNVP--QLKP 2128 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLW 461 + + FLKR F D + +E+ +W Sbjct 2129 VSELTFLKRSFNLVEDRIRPAI-SEKTIW 2156 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 1754 to 2164 Score:87.4 bits(215), Expect:2e-16, Method:Compositional matrix adjust., Identities:110/457(24%), Positives:191/457(41%), Gaps:69/457(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+ + A+ DP A+ ++KY+ Sbjct 1754 SKTLFRKSPIHHHIDKTMINFPAAM--------PFSKAEIDPMAMMLSKYSLPIVEEPED 1805 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + +T D F +DL+ A+ G + DA+ + +S G Sbjct 1806 YKEASVFYQNKI------VGKT--QLVDDF----LDLDMAITGAPGI---DAINMDSSPG 1850 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY ++ K + + L + LA F + DL + C KD Sbjct 1851 FPYVQEKLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1906 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y + R + + + +GI+P RQW Sbjct 1907 ELRPLEKVL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQW 1964 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1965 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALINTIIYSK 2024 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y +CG +PSG P T ++NSI+N I + Y + K F + Sbjct 2025 HLLYNCC--YHVCG--------SMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF--- 2071 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 2072 FCQALRILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSA-DKNVP--QLKP 2128 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKA 469 + + FLKR F D + +E+ +W + + ++ Sbjct 2129 VSELTFLKRSFNLVEDRIRPAI-SEKTIWSLMAWQRS 2164 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 1754 to 2156 Score:87.4 bits(215), Expect:3e-16, Method:Compositional matrix adjust., Identities:110/449(24%), Positives:188/449(41%), Gaps:69/449(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+ + A+ DP AV ++KY+ Sbjct 1754 SKTLFRKSPIYHHIDKTMINFPAAM--------PFSKAEIDPMAVMLSKYSLPIVEEPED 1805 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + +T D F +DL+ A+ G + DA+ + +S G Sbjct 1806 YKEASIFYQNKI------VGKT--QLVDDF----LDLDMAITGAPGI---DAINMDSSPG 1850 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY ++ K + + L + LA F + DL + C KD Sbjct 1851 FPYVQEKLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1906 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y++ R + + + +GI+P RQW Sbjct 1907 ELRPLEKVL-ESKTRAIDACPLDYSILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DRQW 1964 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1965 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALINTIIYSK 2024 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y +CG +PSG P T ++NSI+N + + Y + K F + Sbjct 2025 HLLYNCC--YHVCG--------SMPSGSPCTALLNSIINNVNLYYVFSKIFGKSPVF--- 2071 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 2072 FCQALKILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSA-DKNVP--QLKP 2128 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLW 461 + + FLKR F D + +E+ +W Sbjct 2129 VSELTFLKRSFNLVEDRIRPAI-SEKTIW 2156 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985] Sequence ID: P14553.2 Length: 2230 Range 1: 1757 to 2159 Score:86.7 bits(213), Expect:4e-16, Method:Compositional matrix adjust., Identities:108/448(24%), Positives:190/448(42%), Gaps:67/448(14%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA----KEAGP 91 KT F ++PI ++R P+++ A+ DP AV ++KY+ +E Sbjct 1757 SKTLFKKSPIHHHIDRNMINFPAVM--------PFSKAEIDPMAVMLSKYSLPIVEEPDD 1808 Query 92 FEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPY--- 148 ++ + + + +T+ D F +D++ A+ G + DA+ + +S G+PY Sbjct 1809 YKMASIYFQNKVMGKTF--LVDDF----LDIDMAITGAPGI---DAINMDSSPGFPYVQE 1859 Query 149 RLDRKP----GEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDE 204 +L +K E G V +RIL + E S D+ C KDE Sbjct 1860 KLTKKDLIWLDENGLLLGVHPRLA------QRILYNTVMMENCSDL---DVVFTTCPKDE 1910 Query 205 RLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQWG 263 P+ KV+ E K+R P+ Y + R + + + +GI+P R W Sbjct 1911 LRPLDKVL-ESKTRAIDACPLDYTILCRIYWGPAISYFQLNPGFHTGVAIGIDP-DRHWD 1968 Query 264 KVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQ-------TKN 316 ++ ++ G+ L D+S FD L ++ + + S + G E +K+ Sbjct 1969 ELFKTMVRFGDVGLDLDFSSFDASLSPFMIREAGRILSEMSGTPSHFGEALINTIIYSKH 2028 Query 317 LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 376 L+ CC Y V +PSG P T ++NSI+N + + Y + K F + F Sbjct 2029 LLYNCC----------YHVYGSMPSGSPCTALLNSIVNNVNLYYVFSKIFRKSPVF---F 2075 Query 377 DTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTI 433 + ++ YGDD LI S + + + G +V+ LG+ T DK+ + + I Sbjct 2076 GDALKILCYGDDVLIVFSRNVQIDNLESIGQKIVDEFGKLGMTATSA-DKSVP--KLKPI 2132 Query 434 EDCDFLKRKFKENADGTWSGVMAEEHLW 461 + FLKR F D + +E+ +W Sbjct 2133 SELTFLKRSFNLVEDRIRPAI-SEKTIW 2159 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 1754 to 2156 Score:85.1 bits(209), Expect:1e-15, Method:Compositional matrix adjust., Identities:109/449(24%), Positives:186/449(41%), Gaps:69/449(15%) Query 36 GKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA--------- 86 KT F ++PI +++ P+ + A+ DP A+ ++KY+ Sbjct 1754 SKTLFRKSPIHHHIDKTMINFPAAM--------PFSKAEIDPMAMMLSKYSLPIVEEPED 1805 Query 87 -KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEG 145 KEA F N + + +T D F +DL+ A+ G + DA+ + +S G Sbjct 1806 YKEASIFYQNKI------VGKT--QLVDDF----LDLDMAITGAPGI---DAINMDSSPG 1850 Query 146 YPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCI--ECVKD 203 +PY +R K + + L + LA F + DL + C KD Sbjct 1851 FPYVQERLT----KRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLDVVFTTCPKD 1906 Query 204 ERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-CQVGINPYSRQW 262 E P+ KV+ E K+R P+ Y + R + + + +GI+P QW Sbjct 1907 ELRPLEKVL-ESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDP-DCQW 1964 Query 263 GKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVG---ETGAEREQT----K 315 ++ ++ G+ L D+S FD L ++ + + S + G G T K Sbjct 1965 DELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTALMNTIIYSK 2024 Query 316 NLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDH 375 +L+ CC Y +CG +PSG P T ++NSI+N + + Y + K F + Sbjct 2025 HLLYNCC--YHVCG--------SMPSGSPCTALLNSIINNVNLYYVFSKIFGKSPVF--- 2071 Query 376 FDTYVAMVVYGDDNLISVSEAI---SSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 F + ++ YGDD LI S + + G +V+ LG+ T DK + + Sbjct 2072 FCQALKILCYGDDVLIVFSRDVQIDNLDLIGQKIVDEFKKLGMTATSA-DKNVP--QLKP 2128 Query 433 IEDCDFLKRKFKENADGTWSGVMAEEHLW 461 + + FLKR F D + +E+ +W Sbjct 2129 VSELTFLKRSFNLVEDRIRPAI-SEKTIW 2156 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Cosavirus A isolate Human/Pakistan/0553/-] Sequence ID: B8XTP8.1 Length: 2124 Range 1: 1696 to 2071 Score:80.1 bits(196), Expect:4e-14, Method:Compositional matrix adjust., Identities:110/423(26%), Positives:180/423(42%), Gaps:58/423(13%) Query 57 PSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFE 116 P+ L + D RL N D F+ E G + LD E E + G + Sbjct 1696 PAALSRYDPRLNEGVNLDEVIFSKHTQNTLVEKGSTFRSALDMAAEIYGEKFR----GND 1751 Query 117 FGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDER 176 F P+ +E A+ GI ++ D +T+ G PY R+ + ++ G +I D+ Sbjct 1752 FSPLSVEDAILGIPGLDRLDP---NTASGLPYTKTRR-------QMIDFNTG--QILDDT 1799 Query 177 ILADI-HWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKF 235 + + W +V + +KDE P+ KV K K+R+ V P+ + +A R F Sbjct 1800 LKCRLGQWLAGRPPQEV---HYQTFLKDEIRPIEKV-KAGKTRIIDVPPLDHVIAFRMLF 1855 Query 236 LNFV-----RFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILC-CDYSRFDGFLP 289 F+ F K + C + W L G L DYS FD Sbjct 1856 GRFIAHYHLNFGFKTGSAIGCDPDV-----AWASFGFEL--SGFPYLYDFDYSNFDASHS 1908 Query 290 KCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIV 349 I + + F E G + + L S + + L ++ G+PSG T ++ Sbjct 1909 TSIFEILEQKF--FSPELGFDPRCSLLLKSLAVSTHCYENKRL-QIAGGLPSGTAGTSVL 1965 Query 350 NSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLV-- 407 N+++N I+ A + + + RD ++M+ YGDD + ++SKF + ++ Sbjct 1966 NTVINNIIFHGALYHTY--TNFERDD----ISMLAYGDDIV------VASKFELDLVMVK 2013 Query 408 NFMCNLGIKVTDGVDKTKVGIEFRT--IEDCDFLKRKFKENADGTWSGVMAEEHLWPQLH 465 FM +G K+T DK+ EFR ++D FLKR+F + A G W+ VM E+L L Sbjct 2014 AFMNRIGYKITPA-DKSD---EFRPKCMDDICFLKRRFVKVA-GVWAPVMETENLEAMLS 2068 Query 466 FVK 468 + K Sbjct 2069 WYK 2071 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus A22/550/Azerbaijan/65] Sequence ID: P49303.1 Length: 2336 Range 1: 1953 to 2289 Score:75.1 bits(183), Expect:1e-12, Method:Compositional matrix adjust., Identities:101/372(27%), Positives:158/372(42%), Gaps:40/372(10%) Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT 173 G P+ + A+ G++ + DA+ T+ G P+ L +GK R + N + Sbjct 1953 GTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL------QGKRRGTLIDFENGTVG 2003 Query 174 DERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRK 233 E A E + K Q C +KDE P+ KV + K+R+ VLP+ + L R Sbjct 2004 PEVASA----LELMEKRQY-KFTCQTFLKDEVRPMEKV-RAGKTRIVDVLPVEHILYTRM 2057 Query 234 KFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDG-FLPKC 291 F + + VG NP W + + N + DYS FD Sbjct 2058 MIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHFAQYKN-VWDVDYSAFDANHCSDA 2115 Query 292 IMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNS 351 + + E+F E G L + +A + + VE G+PSG T I+N+ Sbjct 2116 MNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYENKRI-TVEGGMPSGCSATSIINT 2171 Query 352 ILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNF--LVNF 409 ILN I + YA + +E L DTY M+ YGDD + ++S ++ +F L Sbjct 2172 ILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDDIV------VASDYDLDFEALKPH 2219 Query 410 MCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-ENADGTWSGVMAEEHLWPQLHFVK 468 +LG +T K + ++I D FLKR F+ + G + VMA + L L F Sbjct 2220 FKSLGQTITPADKSDKGFVLGQSITDVTFLKRHFRMDYGTGFYKPVMASKTLEAILSF-- 2277 Query 469 AKKVEMSEAYIS 480 A++ + E IS Sbjct 2278 ARRGTIQEKLIS 2289 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 1659 to 2042 Score:74.7 bits(182), Expect:2e-12, Method:Compositional matrix adjust., Identities:102/424(24%), Positives:181/424(42%), Gaps:49/424(11%) Query 29 EHTVGSGGKTSFLETPIEWQLNRPCGKIPS-ILVKGDVRLAGTENADYDPFAVGMTKYAK 87 E + G KT + ++P+ + K P+ + +G++ D V + KY+ Sbjct 1659 EEKISVGSKTKYHKSPLYDFCPQEVVKCPTKLFYQGEI----------DVMQVMLAKYSS 1708 Query 88 EAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYP 147 EP+G V E A T S E + + +NGIE + DA+ L TS G+P Sbjct 1709 PIVS-EPSGYATVVE--AYTNRMVSFFPEPRQLTYDECINGIEGL---DAIDLKTSAGFP 1762 Query 148 YRLDRKPGEKGKARYVEGEPGN-LEITDERILADIHWFEEISKTQVPDLYCIECVKDERL 206 Y G + + G+ + L+ E++ D+H I + C KDE Sbjct 1763 YN---TLGLRKSDLIINGKMAHRLQQDVEKMEEDLHMNRSIQ------VVFTTCAKDELR 1813 Query 207 PVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-----CQVGINPYSRQ 261 P+ KV+ K+R P+S+ + R+ ++ + + + P VG++P + Sbjct 1814 PLSKVML-GKTRAIEACPVSFTILFRR----YLGYALAQIQSHPGFHTGIAVGVDP-DQD 1867 Query 262 WGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLAC 321 W + ++ + + ++ D+S +D L ++ + I G + +M Sbjct 1868 WHCMWYSIVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICG---LDPRLVDRIMEPI 1924 Query 322 CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVA 381 + G + Y V +PSG P T ++NSI+N + I Y C E + + F + Sbjct 1925 VNSVHQLGSMRYYVHGSMPSGTPATSVLNSIINVVNICYVL--CALEEISVFEVFKLF-K 1981 Query 382 MVVYGDDNLISV-SEAISSK-FNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFL 439 ++ YGDD L+ + E + K F + V + LG+ T G DK +V + + FL Sbjct 1982 ILTYGDDVLLCIKKEYLDQKSFPLSSFVQGLEELGLSPT-GADKMEVKVT--PVHKMSFL 2038 Query 440 KRKF 443 KR F Sbjct 2039 KRTF 2042 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 1868 to 2241 Score:74.3 bits(181), Expect:3e-12, Method:Compositional matrix adjust., Identities:112/422(27%), Positives:182/422(43%), Gaps:58/422(13%) Query 57 PSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHD---ASD 113 P++L K D R +AD D V +K+ P V +A + + A Sbjct 1868 PAVLSKFDPR----TDADVD--EVAFSKHTSNQETLPP-----VFRMVAREYANRVFALL 1916 Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNL-EI 172 G + G + ++ AL+G+E M+ D +TS G PY G + + V+ E L Sbjct 1917 GRDNGRLSVKQALDGLEGMDPMDK---NTSPGLPYT---TLGMR-RTDVVDWETATLIPF 1969 Query 173 TDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIR 232 ER+ E+++ D+ +KDE P+ KV + K+R+ V P + + R Sbjct 1970 AAERL-------EKMNNKDFSDIVYQTFLKDELRPIEKV-QAAKTRIVDVPPFEHCILGR 2021 Query 233 KKFLNFV-RFIMKRRDVLPCQVGINPYSRQWGK--VADRLLEKGNSILCCDYSRFDGFLP 289 + F +F + L +G +P W VA + E+ + DYS FD Sbjct 2022 QLLGKFASKFQTQPGLELGSAIGCDP-DVHWTAFGVAMQGFER---VYDVDYSNFDSTHS 2077 Query 290 KCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIV 349 + +AE F E G + L S++A + Y + G+PSG T ++ Sbjct 2078 VAVFRLLAEEF--FSEENGFDPLVKDYLESLAISKHAYEEK-RYLITGGLPSGCAATSML 2134 Query 350 NSILNEILIK---YAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFL 406 N+I+N I+I+ Y +K FE FD V ++ YGDD L+ A + + N + + Sbjct 2135 NTIMNNIIIRAGLYLTYKNFE--------FDD-VKVLSYGDDLLV----ATNYQLNFDRV 2181 Query 407 VNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHF 466 + G K+T + +E T+ED FLKRKFK+ + VM E L L + Sbjct 2182 RTSLAKTGYKITPANKTSTFPLE-STLEDVVFLKRKFKKEGP-LYRPVMNREALEAMLSY 2239 Query 467 VK 468 + Sbjct 2240 YR 2241 >RecName: Full=Polyprotein-FSD; Contains: RecName: Full=Helicase; Contains: RecName: Full=3C-like protease; Short=3CL-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein VP1-FSD; Contains: RecName: Full=Capsid protein VP2 [Solenopsis invicta virus 3] Sequence ID: C1JCT2.2 Length: 3390 Range 1: 1893 to 2186 Score:73.6 bits(179), Expect:4e-12, Method:Compositional matrix adjust., Identities:85/319(27%), Positives:133/319(41%), Gaps:46/319(14%) Query 251 CQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAE 310 C VG NPY+ K + CDY FD +PKC+ +M Sbjct 1893 CAVGCNPYATF--HKFATKFFKFKNFFSCDYKNFDRTIPKCVFEDFRDMLI-------QA 1943 Query 311 REQTKNLMLAC----CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCF 366 KN + AC R + G + V G+PSG T +NS +N+I+I AY Sbjct 1944 NPHMKNEIYACFQTIIDRIQVSGNSILLVHGGMPSGCVPTAPLNSKVNDIMIYTAYVNIL 2003 Query 367 ETESLIRDHFDTY------VAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL-GIKVTD 419 R +Y V + YGDD +I+V ++I+ FN L M L G+ +TD Sbjct 2004 RRAD--RGDITSYRYYRDLVCRLFYGDDVIIAVDDSIADIFNCQTLSEEMKILFGMNMTD 2061 Query 420 GVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYI 479 G K+ + +F TIE F+ R F+ V A + + Q HF A + E + Sbjct 2062 G-SKSDIIPKFETIETLSFISRFFRPLKHQENFIVGALKKISIQTHFYYATD-DTPEHF- 2118 Query 480 SNCNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQ---------- 529 +++ E+AA + E +K++ + + +++ F N + Sbjct 2119 -------GQVFKTIQEEAALWEEEYFNKIQSYIQEIIRKFPEISKFFNFESYKSIQKRYI 2171 Query 530 MNGEHPFVEACHQLENLEL 548 MNG + FV +LE L+L Sbjct 2172 MNGWNEFV----KLEKLDL 2186 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A5)] Sequence ID: P03307.2 Length: 2332 Range 1: 1931 to 2288 Score:73.6 bits(179), Expect:5e-12, Method:Compositional matrix adjust., Identities:103/395(26%), Positives:166/395(42%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1931 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1985 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1986 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFVCQTFLKDEIRPMEK 2034 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2035 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2092 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F G K L+ + +A Sbjct 2093 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRTDFGFHPNAEWILKTLV---NTEHAYE 2148 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2149 NK-RHTVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2201 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2202 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2255 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2256 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2288 >RecName: Full=Polyprotein; Contains: RecName: Full=Helicase; Contains: RecName: Full=3C-like protease; Short=3CL-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein VP1 [Solenopsis invicta virus 3] Sequence ID: C1JCT1.1 Length: 2580 Range 1: 1893 to 2186 Score:73.6 bits(179), Expect:5e-12, Method:Compositional matrix adjust., Identities:86/319(27%), Positives:137/319(42%), Gaps:46/319(14%) Query 251 CQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAE 310 C VG NPY+ K + CDY FD +PKC+ E F +++ + Sbjct 1893 CAVGCNPYATF--HKFATKFFKFKNFFSCDYKNFDRTIPKCVF----EDFRDMLIQANP- 1945 Query 311 REQTKNLMLAC----CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCF 366 KN + AC R + G + V G+PSG T +NS +N+I+I AY Sbjct 1946 --HMKNEIYACFQTIIDRIQVSGNSILLVHGGMPSGCVPTAPLNSKVNDIMIYTAYVNIL 2003 Query 367 ETESLIRDHFDTY------VAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL-GIKVTD 419 R +Y V + YGDD +I+V ++I+ FN L M L G+ +TD Sbjct 2004 RRAD--RGDITSYRYYRDLVCRLFYGDDVIIAVDDSIADIFNCQTLSEEMKILFGMNMTD 2061 Query 420 GVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYI 479 G K+ + +F TIE F+ R F+ V A + + Q HF A + E + Sbjct 2062 G-SKSDIIPKFETIETLSFISRFFRPLKHQENFIVGALKKISIQTHFYYATD-DTPEHF- 2118 Query 480 SNCNNILRELWLGSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQ---------- 529 +++ E+AA + E +K++ + + +++ F N + Sbjct 2119 -------GQVFKTIQEEAALWEEEYFNKIQSYIQEIIRKFPEISKFFNFESYKSIQKRYI 2171 Query 530 MNGEHPFVEACHQLENLEL 548 MNG + FV +LE L+L Sbjct 2172 MNGWNEFV----KLEKLDL 2186 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus C1] Sequence ID: P15072.2 Length: 2327 Range 1: 1926 to 2283 Score:73.2 bits(178), Expect:6e-12, Method:Compositional matrix adjust., Identities:103/395(26%), Positives:165/395(41%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1926 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1980 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1981 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2029 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2030 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2087 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F E G L + +A Sbjct 2088 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYE 2143 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2144 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2196 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2197 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2250 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2251 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C1-Santa Pau)] Sequence ID: P03311.2 Length: 2327 Range 1: 1926 to 2283 Score:73.2 bits(178), Expect:6e-12, Method:Compositional matrix adjust., Identities:103/395(26%), Positives:165/395(41%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1926 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1980 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1981 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2029 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2030 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2087 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F E G L + +A Sbjct 2088 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYE 2143 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2144 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2196 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2197 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2250 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2251 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A24 Cruzeiro)] Sequence ID: P03309.2 Length: 2333 Range 1: 1932 to 2289 Score:73.2 bits(178), Expect:7e-12, Method:Compositional matrix adjust., Identities:103/395(26%), Positives:165/395(41%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1932 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1986 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1987 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2035 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2036 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2093 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F E G L + +A Sbjct 2094 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYE 2149 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2150 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2202 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2203 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2256 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2257 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2289 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase; Short=Pro-Pol [Canine calicivirus (strain 48)] Sequence ID: Q8V736.1 Length: 1929 Range 1: 1504 to 1836 Score:72.8 bits(177), Expect:7e-12, Method:Compositional matrix adjust., Identities:91/351(26%), Positives:144/351(41%), Gaps:21/351(5%) Query 125 ALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWF 184 A +E + F AL + TS G PY RK +++ E G + T R + W Sbjct 1504 ATTHLEMGDAFAALNVKTSCG-PYITGRK------KDHIDPETGKWDET-LRNHINARWS 1555 Query 185 EEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMK 244 +P Y + +KDE P K I K RL + + F IM Sbjct 1556 LATQGVPIPHEYQL-GLKDELRPKDK-IAVGKRRLIWGCDVGVAVVAASAFKEVSSAIMA 1613 Query 245 RRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIV 304 + QVGIN + RL G C DYS++D P + E+ + Sbjct 1614 MSEFDFIQVGINMDGTAVETLYKRLYTPGTHRYCVDYSKWDSTQPPNVTRMSLELLRHFT 1673 Query 305 GETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWK 364 ++ L A+ G V ++ G+PSG PLT I+NS+ + +L+ A + Sbjct 1674 DKSPVVDSAVATL---SSPSIAVFGGVSFKTNGGLPSGMPLTSILNSLNHCLLVGSAIIQ 1730 Query 365 CFETESLIRDH--FDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVD 422 E++ + + +DT + + YGDD + V + S F + + + G+K T D Sbjct 1731 VLESKGVDVNWNIYDT-IDLFTYGDDGVYIVPNFVHSVMPEVF--SCLSSYGLKPTR-TD 1786 Query 423 KTKVGI-EFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKV 472 K+ I E E +FLKR+F N G ++ L Q +++K K Sbjct 1787 KSSAPITEIPLSEPIEFLKRQFVRNQFGV-RALLDRSSLIRQFYYIKGKNT 1836 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C3 Indaial)] Sequence ID: P03310.2 Length: 2328 Range 1: 1927 to 2284 Score:72.0 bits(175), Expect:1e-11, Method:Compositional matrix adjust., Identities:102/395(26%), Positives:165/395(41%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1927 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1981 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1982 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2030 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2031 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2088 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F E G L + +A Sbjct 2089 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYE 2144 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2145 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2197 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L ++G +T K + +I D FLKR F + Sbjct 2198 IV------VASDYDLDFEALKPHFKSIGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2251 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2252 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2284 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A10-61)] Sequence ID: P03306.2 Length: 2332 Range 1: 1931 to 2288 Score:71.6 bits(174), Expect:2e-11, Method:Compositional matrix adjust., Identities:102/395(26%), Positives:167/395(42%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1931 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1985 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1986 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2034 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L + F + + VG NP W + Sbjct 2035 V-RAGKTRIVDVLPVEHILYTKMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2092 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F G K L+ + +A Sbjct 2093 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRTDFGFHPNAEWILKTLV---NTEHAYE 2148 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2149 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2201 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + ++I D FLKR F + Sbjct 2202 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGQSITDVTFLKRHFHMD 2255 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2256 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2288 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A12)] Sequence ID: P03308.2 Length: 2333 Range 1: 1932 to 2284 Score:71.2 bits(173), Expect:2e-11, Method:Compositional matrix adjust., Identities:98/388(25%), Positives:161/388(41%), Gaps:42/388(10%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ Sbjct 1932 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMESDTAPGLPWAF-- 1986 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1987 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFACQTFLKDEIRPMEK 2035 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2036 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2093 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F G K L+ + +A Sbjct 2094 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRTDFGFHPNAEWILKTLV---NTEHAYE 2149 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + VE G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2150 NKRI-TVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2202 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2203 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHID 2256 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVE 473 G + VMA + L L F + ++ Sbjct 2257 YGTGFYKPVMASKTLEAILSFARRGTIQ 2284 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lb(pro); Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain O1)] Sequence ID: P03305.1 Length: 2332 Range 1: 1931 to 2288 Score:70.5 bits(171), Expect:4e-11, Method:Compositional matrix adjust., Identities:102/395(26%), Positives:164/395(41%), Gaps:44/395(11%) Query 93 EPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDR 152 E L R C + + + G P+ + A+ G++ + DA+ T+ G P+ L Sbjct 1931 EDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGL---DAMEPDTAPGLPWAL-- 1985 Query 153 KPGEKGKAR--YVEGEPGNLEITDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRK 210 +GK R ++ E G + E L ++ + + C +KDE P+ K Sbjct 1986 ----QGKRRGALIDFENGTVGPEVEAAL-------KLMEKREYKFVCQTFLKDEIRPLEK 2034 Query 211 VIKEPKSRLFTVLPMSYNLAIRKKFLNF-VRFIMKRRDVLPCQVGINPYSRQWGKVADRL 269 V + K+R+ VLP+ + L R F + + VG NP W + Sbjct 2035 V-RAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVDWQRFGTHF 2092 Query 270 LEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC 328 + N + DYS FD + + E+F E G L + +A Sbjct 2093 AQYRN-VWDVDYSAFDANHCSDAMNIMFEEVFRT---EFGFHPNAEWILKTLVNTEHAYE 2148 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 + + V G+PSG T I+N+ILN I + YA + +E L DTY M+ YGDD Sbjct 2149 NKRI-TVGGGMPSGCSATSIINTILNNIYVLYALRRHYEGVEL-----DTYT-MISYGDD 2201 Query 389 NLISVSEAISSKFNGNF--LVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFK-E 445 + ++S ++ +F L +LG +T K + +I D FLKR F + Sbjct 2202 IV------VASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMD 2255 Query 446 NADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYIS 480 G + VMA + L L F A++ + E IS Sbjct 2256 YGTGFYKPVMASKTLEAILSF--ARRGTIQEKLIS 2288 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Saffold virus] Sequence ID: C0MHL9.1 Length: 2295 Range 1: 1826 to 2218 Score:69.7 bits(169), Expect:6e-11, Method:Compositional matrix adjust., Identities:112/431(26%), Positives:182/431(42%), Gaps:46/431(10%) Query 21 KAVGIISPEHTVGSGGKTSFLETPIEWQLNR----PCGKI---PSILVKGDVRLAGTENA 73 KA+ ++P+ + G + + P + +L R PC + P++L + D R T++ Sbjct 1826 KALDCLTPQGAIVEIGIDTVVHVPRKTKLRRTVAHPCFQPKFEPAVLSRYDPRT--TKDV 1883 Query 74 DYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENME 133 D F+ T + P+ V A T + G E + E A+ G+ M Sbjct 1884 DQVAFSKHTTNLEEL-----PSVFSMVAREYA-TRVFTTIGKENKILTPEQAILGLPGM- 1936 Query 134 YFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQVP 193 D + TS G PY + G K +A+ V E G + + L + H ++++ Sbjct 1937 --DPMEKDTSPGLPYT---QQGLK-RAQLVNFEQGTMV----QNLKEAH--TKLTEGNYE 1984 Query 194 DLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFV-RFIMKRRDVLPCQ 252 D+ +KDE P+ K I E K+R+ V P + + R+ F RF L Sbjct 1985 DILYQSFLKDEIRPIEK-IHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSA 2043 Query 253 VGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAERE 312 +G +P W A +LL+ + DYS FD + + E F E G + Sbjct 2044 IGTDP-DTDWTAFAFQLLQY-KYVYDVDYSNFDASHSTAMFEVLIENF--FTTENGFDER 2099 Query 313 QTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLI 372 L SR+A R + V G+PSG T ++N+I+N I+I+ A + Sbjct 2100 IGDYLRSLAVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAALHLTYSNF--- 2155 Query 373 RDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRT 432 FD + ++ YGDD LI A + + N N + + K+T +KT E Sbjct 2156 --EFDD-IKVLSYGDDLLI----ATNYQINFNLVKQRLAPFNYKITPA-NKTVEFPEISN 2207 Query 433 IEDCDFLKRKF 443 + + FLKRKF Sbjct 2208 LYEVTFLKRKF 2218 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 1659 to 2042 Score:69.3 bits(168), Expect:8e-11, Method:Compositional matrix adjust., Identities:100/424(24%), Positives:179/424(42%), Gaps:49/424(11%) Query 29 EHTVGSGGKTSFLETPIEWQLNRPCGKIPS-ILVKGDVRLAGTENADYDPFAVGMTKYAK 87 E + G KT + ++P+ + K P+ + +G++ D V + KY+ Sbjct 1659 EEKISVGSKTKYHKSPLYDFCPQEVIKCPTKLFYQGEI----------DVMQVMLAKYSS 1708 Query 88 EAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYP 147 EP G V E A T S E + + +NGIE + DA+ L TS G+P Sbjct 1709 PIVS-EPLGYATVVE--AYTNRMVSFFSEPRQLTYDECINGIEGL---DAIDLKTSAGFP 1762 Query 148 YRLDRKPGEKGKARYVEGEPGN-LEITDERILADIHWFEEISKTQVPDLYCIECVKDERL 206 Y G + + G+ L+ E++ D+H I + C KDE Sbjct 1763 YN---TLGLRKSDLIINGKMAQRLQQDVEKMEEDLHMNRSIQ------VVFTTCAKDELR 1813 Query 207 PVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-----CQVGINPYSRQ 261 P+ KV+ K+R P+S+ + R+ ++ + + + P VG++P + Sbjct 1814 PLSKVML-GKTRAIEACPVSFTILFRR----YLGYALAQIQSHPGFHTGIAVGVDP-DQD 1867 Query 262 WGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLAC 321 W + ++ + + ++ D+S +D L ++ + I G + +M Sbjct 1868 WHCMWYSIVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICG---LDPRLVDRIMEPI 1924 Query 322 CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVA 381 + G + Y V +PSG P T ++NSI+N + I + C + + + F + Sbjct 1925 VNSVHQLGSMRYYVHGSMPSGTPATSVLNSIINVVNICHVL--CALEKISVFEVFKLF-K 1981 Query 382 MVVYGDDNLISV-SEAISSK-FNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFL 439 ++ YGDD L+ + E + K F + V + LG+ T G DK +V + + FL Sbjct 1982 ILTYGDDVLLCIKKEYLDQKSFPLSSFVQGLEELGLSPT-GADKMEVKVT--PVHKMSFL 2038 Query 440 KRKF 443 KR F Sbjct 2039 KRTF 2042 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1916 to 2240 Score:68.2 bits(165), Expect:2e-10, Method:Compositional matrix adjust., Identities:98/361(27%), Positives:158/361(43%), Gaps:42/361(11%) Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT 173 G + G + ++ AL G+E M+ D +TS G PY G + + V+ E L Sbjct 1916 GRDNGRLTVKQALEGLEGMDPMDK---NTSPGLPYT---ALGMR-RTDVVDWESATL--- 1965 Query 174 DERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRK 233 I +++++ D+ +KDE PV KV + K+R+ V P + + R+ Sbjct 1966 ---IPYAADRLKKMNEGDFSDIVYQTFLKDELRPVEKV-QAAKTRIVDVPPFEHCILGRQ 2021 Query 234 KFLNFV-RFIMKRRDVLPCQVGINPYSRQWGK--VADRLLEKGNSILCCDYSRFDGFLPK 290 F +F + L +G +P W VA + E+ + DYS FD Sbjct 2022 LLGRFASKFQTQPGLELGSAIGCDP-DVHWTAFGVAMQGFER---VYDVDYSNFDSTHSV 2077 Query 291 CIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVN 350 + +AE F E G + + L S +A + Y + G+PSG T ++N Sbjct 2078 AMFRLLAEEF--FTPENGFDPLVKEYLESLAISTHAFEEK-RYLITGGLPSGCAATSMLN 2134 Query 351 SILNEILIK---YAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLV 407 +I+N I+I+ Y +K FE FD V ++ YGDD L+ A + + N + + Sbjct 2135 TIMNNIIIRAGLYLTYKNFE--------FDD-VKVLSYGDDLLV----ATNYQLNFDKVR 2181 Query 408 NFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFV 467 + G K+T +KT T+ED FLKRKFK+ + VM E L L + Sbjct 2182 ASLAKTGYKITPA-NKTSTFPLDSTLEDVVFLKRKFKKEGP-LYRPVMNREALEAMLSYY 2239 Query 468 K 468 + Sbjct 2240 R 2240 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1916 to 2240 Score:68.2 bits(165), Expect:2e-10, Method:Compositional matrix adjust., Identities:98/361(27%), Positives:158/361(43%), Gaps:42/361(11%) Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT 173 G + G + ++ AL G+E M+ D +TS G PY G + + V+ E L Sbjct 1916 GRDNGRLTVKQALEGLEGMDPMDK---NTSPGLPYT---ALGMR-RTDVVDWESATL--- 1965 Query 174 DERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRK 233 I +++++ D+ +KDE PV KV + K+R+ V P + + R+ Sbjct 1966 ---IPYAADRLKKMNEGDFSDIVYQTFLKDELRPVEKV-QAAKTRIVDVPPFEHCILGRQ 2021 Query 234 KFLNFV-RFIMKRRDVLPCQVGINPYSRQWGK--VADRLLEKGNSILCCDYSRFDGFLPK 290 F +F + L +G +P W VA + E+ + DYS FD Sbjct 2022 LLGRFASKFQTQPGLELGSAIGCDP-DVHWTAFGVAMQGFER---VYDVDYSNFDSTHSV 2077 Query 291 CIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVN 350 + +AE F E G + + L S +A + Y + G+PSG T ++N Sbjct 2078 AMFRLLAEEF--FTPENGFDPLVKEYLESLAISTHAFEEK-RYLITGGLPSGCAATSMLN 2134 Query 351 SILNEILIK---YAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLV 407 +I+N I+I+ Y +K FE FD V ++ YGDD L+ A + + N + + Sbjct 2135 TIMNNIIIRAGLYLTYKNFE--------FDD-VKVLSYGDDLLV----ATNYQLNFDKVR 2181 Query 408 NFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFV 467 + G K+T +KT T+ED FLKRKFK+ + VM E L L + Sbjct 2182 ASLAKTGYKITPA-NKTSTFPLDSTLEDVVFLKRKFKKEGP-LYRPVMNREALEAMLSYY 2239 Query 468 K 468 + Sbjct 2240 R 2240 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Sweet potato mild mottle virus isolate Salazar] Sequence ID: P89201.1 Length: 3456 Range 1: 2830 to 3019 Score:67.8 bits(164), Expect:3e-10, Method:Compositional matrix adjust., Identities:64/201(32%), Positives:92/201(45%), Gaps:18/201(8%) Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE 271 +KE K+R+FT P+ LA + NF + K P VGIN ++R W K+A+ Sbjct 2830 LKEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKCHLQGPWTVGINKFNRGWNKLAN-YFN 2888 Query 272 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQT-KNLMLACCSR--YAIC 328 + CD SRFD +P IM M ++ G+ + QT NL + I Sbjct 2889 HDWVFIDCDGSRFDSSIPP-IMFNAVCMLRSVFGDLDPDENQTLSNLYTEIVNTPILTIE 2947 Query 329 GRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDD 388 G ++ + G SG P TV+ N+++ I ++YA K F T I+ V GDD Sbjct 2948 GNIIRKFR-GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIK--------YVCNGDD 2998 Query 389 NLI----SVSEAISSKFNGNF 405 LI S + AIS F F Sbjct 2999 LLINCPRSTANAISEHFKDVF 3019 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 1659 to 2042 Score:67.4 bits(163), Expect:3e-10, Method:Compositional matrix adjust., Identities:100/424(24%), Positives:177/424(41%), Gaps:49/424(11%) Query 29 EHTVGSGGKTSFLETPIEWQLNRPCGKIPS-ILVKGDVRLAGTENADYDPFAVGMTKYAK 87 E + G KT + ++P+ + K P+ + +G++ D V + KY+ Sbjct 1659 EKKISVGSKTKYHKSPLYDFCPQKVIKCPTKLFYQGEI----------DVMQVMLAKYSS 1708 Query 88 EAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYP 147 EP G V E A T S E + + +NGIE + DA+ L TS G+P Sbjct 1709 PIVS-EPLGYATVVE--AYTNRMVSFFSEPRQLTYDECINGIEGL---DAIDLKTSAGFP 1762 Query 148 YRLDRKPGEKGKARYVEGEPGN-LEITDERILADIHWFEEISKTQVPDLYCIECVKDERL 206 Y K + G+ L+ E++ D+H I + C KDE Sbjct 1763 YN---TLSLKKSDLIINGKKAQRLQQDVEKMEEDLHMNRSIQ------VVFTTCAKDELR 1813 Query 207 PVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP-----CQVGINPYSRQ 261 P+ K + K+R P+S+ + RK ++ + + + P VG++P + Sbjct 1814 PLSKGML-GKTRAIKACPVSFTILFRK----YLGYALAQIQSHPGFHTGIAVGVDP-DQD 1867 Query 262 WGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLAC 321 W + ++ + + ++ D+S +D L ++ + I G + +M Sbjct 1868 WHCMWYSIVTQCDLVVGLDFSNYDASLSPFMIYHAGRVLGQICG---LDPRLVDRIMEPI 1924 Query 322 CSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVA 381 + G + Y V+ +PSG P T ++NSI+N + I + C + + + F Sbjct 1925 VNSVHQLGSMRYYVDGSMPSGTPATSVLNSIINVVNISHVL--CALEKISVFEVFK-LSK 1981 Query 382 MVVYGDDNLISV-SEAISSK-FNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFL 439 ++ YGDD L + E++ K F + V + LG+ T G DK +V + + FL Sbjct 1982 ILTYGDDVLFCIKKESLDQKSFPLSSFVQGLKELGMSPT-GADKMEVKVT--PVHKMSFL 2038 Query 440 KRKF 443 KR F Sbjct 2039 KRTF 2042 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)] Sequence ID: P08544.1 Length: 2303 Range 1: 2000 to 2226 Score:65.1 bits(157), Expect:2e-09, Method:Compositional matrix adjust., Identities:67/245(27%), Positives:110/245(44%), Gaps:20/245(8%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFV-RFIMKRRDVLPCQVGINPYS 259 +KDE P+ K I E K+R+ V P ++ + R+ F +F K L +G +P Sbjct 2000 LKDEIRPIEK-IHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-D 2057 Query 260 RQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLML 319 W + A L N + DYS FD + + F + G +R + L Sbjct 2058 VDWTRYAVEL-SGFNYVYDVDYSNFDASHSTAMFECLINNF--FTEQNGFDRRIAEYLRS 2114 Query 320 ACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFD-T 378 SR+A R + + G+PSG T ++N+I+N ++I+ A + L +FD Sbjct 2115 LAVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAALY-------LTYSNFDFD 2166 Query 379 YVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDF 438 + ++ YGDD LI + I + N + + G K+T +KT ++D F Sbjct 2167 DIKVLSYGDDLLIGTNYQI----DFNLVKERLAPFGYKITPA-NKTTTFPLTSHLQDVTF 2221 Query 439 LKRKF 443 LKR+F Sbjct 2222 LKRRF 2226 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's murine encephalomyeltits virus GDVII] Sequence ID: P08545.2 Length: 2303 Range 1: 2000 to 2226 Score:64.7 bits(156), Expect:3e-09, Method:Compositional matrix adjust., Identities:66/244(27%), Positives:109/244(44%), Gaps:18/244(7%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFV-RFIMKRRDVLPCQVGINPYS 259 +KDE P+ K I E K+R+ V P ++ + R+ F +F K L +G +P Sbjct 2000 LKDEIRPLEK-IHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGFELGSAIGTDP-D 2057 Query 260 RQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLML 319 W + A L N + DYS FD + + F + G +R + L Sbjct 2058 VDWTRYAAEL-SGFNYVYDVDYSNFDASHSTAMFECLINNF--FTEQNGFDRRIAEYLRS 2114 Query 320 ACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTY 379 SR+A R + + G+PSG T ++N+I+N ++I+ A + + FD Sbjct 2115 LAVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAALYLTYSNF-----EFDD- 2167 Query 380 VAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFL 439 + ++ YGDD LI + I + N + + G K+T +KT ++D FL Sbjct 2168 IKVLSYGDDLLIGTNYQI----DFNLVKERLAPFGYKITPA-NKTTTFPLTSHLQDVTFL 2222 Query 440 KRKF 443 KR+F Sbjct 2223 KRRF 2226 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [San Miguel sea lion virus 4] Sequence ID: P36287.2 Length: 1214 Range 1: 854 to 1120 Score:63.5 bits(153), Expect:4e-09, Method:Compositional matrix adjust., Identities:72/279(26%), Positives:117/279(41%), Gaps:18/279(6%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSR 260 +KDE P KV K RL + + R F IM + QVGIN Sbjct 854 LKDELRPKDKVAVG-KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGP 912 Query 261 QWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLA 320 + RL + C DYS++D P + + ++ + ++ L Sbjct 913 AVEDLFKRLERPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLK-- 970 Query 321 CCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYV 380 + I V ++V G+PSG PLT I+NS+ + +++ A K E +S ++ ++ + Sbjct 971 -SNPIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMVGSAVVKALE-DSGVQVSWNIFD 1028 Query 381 AM--VVYGDDNLISVSEAISSKFNGNFLVNFMCNL---GIKVTDGVDKTKVGIE-FRTIE 434 +M YGDD + V ISS + N NL G+K T DK+ I E Sbjct 1029 SMDLFTYGDDGVYIVPPLISS-----VMPNVFANLKQFGLKPTR-TDKSDAEITPIPADE 1082 Query 435 DCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVE 473 +FLKR +G ++ + Q +++KA+ E Sbjct 1083 PVEFLKRTIVRTENGI-RALLDRSSIIRQFYYIKAENTE 1120 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p16; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [San Miguel sea lion virus 1] Sequence ID: P36286.3 Length: 1879 Range 1: 1519 to 1785 Score:62.8 bits(151), Expect:8e-09, Method:Compositional matrix adjust., Identities:71/276(26%), Positives:116/276(42%), Gaps:12/276(4%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSR 260 +KDE P KV K RL + + R F IM + QVGIN Sbjct 1519 LKDELRPKDKVAVG-KRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQVGINMDGP 1577 Query 261 QWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLA 320 RL + C DYS++D P + + ++ + ++ L Sbjct 1578 AVEDPFKRLERPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLK-- 1635 Query 321 CCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYV 380 + I V ++V G+PSG PLT I+NS+ + +++ A K E +S ++ ++ + Sbjct 1636 -SNPIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMVGSAVVKALE-DSGVQVTWNIFD 1693 Query 381 AM--VVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIE-FRTIEDCD 437 +M YGDD + V ISS F + + G+K T DKT I E + Sbjct 1694 SMDLFTYGDDGVYIVPPLISSVMPKVF--SNLRQFGLKPTR-TDKTDAEITPIPADEPVE 1750 Query 438 FLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVE 473 FLKR +G ++ + + Q +++KA+ E Sbjct 1751 FLKRTIVRTENGV-RALLDKSSIIRQFYYIKAENTE 1785 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain Rueckert] Sequence ID: Q66765.1 Length: 2292 Range 1: 1916 to 2240 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:96/369(26%), Positives:162/369(43%), Gaps:58/369(15%) Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNL-EI 172 G + G + ++ AL G+E M+ D +TS G PY G + + V+ E L Sbjct 1916 GKDNGRLTVKQALEGLEGMDPMDR---NTSPGLPYT---ALGMR-RTDVVDWESATLIPF 1968 Query 173 TDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIR 232 ER+ ++++ ++ +KDE P+ KV + K+R+ V P + + R Sbjct 1969 AAERL-------RKMNEGDFSEVVYQTFLKDELRPIEKV-QAAKTRIVDVPPFEHCILGR 2020 Query 233 KKFLNFV-RFIMKRRDVLPCQVGINPYSRQWGK--VADRLLEKGNSILCCDYSRFDGFLP 289 + F +F + L +G +P W VA + E+ + DYS FD Sbjct 2021 QLLGKFASKFQTQPGLELGSAIGCDP-DVHWTAFGVAMQGFER---VYDVDYSNFDSTHS 2076 Query 290 KCIMVKIAEMFSNIVGETGAE---REQTKNLMLACCS----RYAICGRVLYRVENGIPSG 342 + +AE F E G + RE ++L ++ + R+ I G G+PSG Sbjct 2077 VAMFRLLAEEF--FTPENGFDPLTREYLESLAISTHAFEEKRFLITG--------GLPSG 2126 Query 343 FPLTVIVNSILNEILIK---YAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISS 399 T ++N+I+N I+I+ Y +K FE FD V ++ YGDD L+ A + Sbjct 2127 CAATSMLNTIMNNIIIRAGLYLTYKNFE--------FDD-VKVLSYGDDLLV----ATNY 2173 Query 400 KFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEH 459 + + + + + G K+T + + T+ED FLKRKFK+ + VM E Sbjct 2174 QLDFDKVRASLAKTGYKITPANTTSTFPLN-STLEDVVFLKRKFKKEGP-LYRPVMNREA 2231 Query 460 LWPQLHFVK 468 L L + + Sbjct 2232 LEAMLSYYR 2240 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 1914 to 2238 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:96/369(26%), Positives:162/369(43%), Gaps:58/369(15%) Query 114 GFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNL-EI 172 G + G + ++ AL G+E M+ D +TS G PY G + + V+ E L Sbjct 1914 GKDNGRLTVKQALEGLEGMDPMDR---NTSPGLPYT---ALGMR-RTDVVDWESATLIPF 1966 Query 173 TDERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIR 232 ER+ ++++ ++ +KDE P+ KV + K+R+ V P + + R Sbjct 1967 AAERL-------RKMNEGDFSEVVYQTFLKDELRPIEKV-QAAKTRIVDVPPFEHCILGR 2018 Query 233 KKFLNFV-RFIMKRRDVLPCQVGINPYSRQWGK--VADRLLEKGNSILCCDYSRFDGFLP 289 + F +F + L +G +P W VA + E+ + DYS FD Sbjct 2019 QLLGKFASKFQTQPGLELGSAIGCDP-DVHWTAFGVAMQGFER---VYDVDYSNFDSTHS 2074 Query 290 KCIMVKIAEMFSNIVGETGAE---REQTKNLMLACCS----RYAICGRVLYRVENGIPSG 342 + +AE F E G + RE ++L ++ + R+ I G G+PSG Sbjct 2075 VAMFRLLAEEF--FTPENGFDPLTREYLESLAISTHAFEEKRFLITG--------GLPSG 2124 Query 343 FPLTVIVNSILNEILIK---YAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISS 399 T ++N+I+N I+I+ Y +K FE FD V ++ YGDD L+ A + Sbjct 2125 CAATSMLNTIMNNIIIRAGLYLTYKNFE--------FDD-VKVLSYGDDLLV----ATNY 2171 Query 400 KFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEH 459 + + + + + G K+T + + T+ED FLKRKFK+ + VM E Sbjct 2172 QLDFDKVRASLAKTGYKITPANTTSTFPLN-STLEDVVFLKRKFKKEGP-LYRPVMNREA 2229 Query 460 LWPQLHFVK 468 L L + + Sbjct 2230 LEAMLSYYR 2238 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p5.6; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [Feline calicivirus strain CFI/68 FIV] Sequence ID: P27407.3 Length: 1762 Range 1: 1365 to 1670 Score:61.6 bits(148), Expect:2e-08, Method:Compositional matrix adjust., Identities:78/327(24%), Positives:129/327(39%), Gaps:29/327(8%) Query 155 GEKGKARYVEGEPGNLEITDERILADI---HWFEEISKTQVPDLYCIECVKDERLPVRKV 211 G + K V GEP ++ L D+ W +P Y I +KDE P+ KV Sbjct 1365 GGRKKDHMVNGEP-------DKALLDLLSSKWKLATQGIALPHEYTIG-LKDELRPIEKV 1416 Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE 271 +E K R+ + F I P QVGIN S + R+ + Sbjct 1417 -QEGKRRMIWGCDVGVATVCAAAFKGVSDAITANHQYGPIQVGINMDSPSVEALFQRI-K 1474 Query 272 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRV 331 + DYS++D + ++ T T L A+ V Sbjct 1475 SARKVFAVDYSKWDSTQSPRVSAASIDILRYFSDRTPIVDSATNTLK---SPPIAVFNGV 1531 Query 332 LYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETES--LIRDHFDTYVAMVVYGDDN 389 +V +G+PSG PLT ++NS+ + + + A + E + + + F T+ M+ YGDD Sbjct 1532 AVKVSSGLPSGMPLTSVINSLNHCLYVGCAILQSLEARNVPVTWNLFSTF-DMMTYGDDG 1590 Query 390 LI---SVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKEN 446 + ++ +IS + N + G+K T VDK+ IE FLKR Sbjct 1591 VYMFPTMYASISDQIFAN-----LSAYGLKPTR-VDKSVGSIEPIDPNSVVFLKRTITRT 1644 Query 447 ADGTWSGVMAEEHLWPQLHFVKAKKVE 473 G G++ + Q +++K + + Sbjct 1645 PQGI-RGLLDRSSILRQFYYIKGENTD 1670 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p16; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [Vesicular exanthema of swine virus A48] Sequence ID: Q9DUN3.1 Length: 1881 Range 1: 1521 to 1787 Score:61.2 bits(147), Expect:3e-08, Method:Compositional matrix adjust., Identities:70/276(25%), Positives:114/276(41%), Gaps:12/276(4%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSR 260 +KDE P KV K RL + + F IM + QVGIN Sbjct 1521 LKDELRPKDKVAVG-KRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGP 1579 Query 261 QWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLA 320 + RL + C DYS++D P + + ++ + ++ L Sbjct 1580 AVEDLFKRLERPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLK-- 1637 Query 321 CCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYV 380 + I V ++V G+PSG PLT I+NS+ + +++ A K E +S +R ++ + Sbjct 1638 -SNPIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMVGSAVVKALE-DSGVRVTWNIFD 1695 Query 381 AM--VVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIE-FRTIEDCD 437 +M YGDD + V ISS F + G+K T DK+ I E + Sbjct 1696 SMDLFTYGDDGVYIVPPLISSVMPKVFA--NLRQFGLKPTR-TDKSDAEITPIPADEPVE 1752 Query 438 FLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVE 473 FLKR +G ++ + Q +++KA+ E Sbjct 1753 FLKRTIVRTENGV-RALLDRSSIIRQFYYIKAENTE 1787 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p34; Contains: RecName: Full=NTPase; AltName: Full=p37; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p8; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=p20; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=p53; Contains: RecName: Full=Capsid protein; AltName: Full=VP1 [Nebraska virus] Sequence ID: Q8JN60.1 Length: 2210 Range 1: 1290 to 1544 Score:60.5 bits(145), Expect:4e-08, Method:Compositional matrix adjust., Identities:63/269(23%), Positives:105/269(39%), Gaps:22/269(8%) Query 183 WFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFI 242 W + T + Y + +KDE PV KV E K RL L + Sbjct 1290 WSRAGTGTALDHTYIV-ALKDELRPVEKV-AEGKRRLIWGADARVALIASAALSPIANAL 1347 Query 243 MKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSN 302 ++LP QVG++P S L + + L DYS++D + ++ ++ N Sbjct 1348 KTVTNLLPVQVGVDPSSASCVSAWVNRLNRHDHCLELDYSKWDSTMSPVLINIAIDILCN 1407 Query 303 IVGETGAEREQTKNLMLACCSRY-----AICGRVLYRVENGIPSGFPLTVIVNSILNEIL 357 G L +A C A+ V ++G+PSG P T +NSI++ IL Sbjct 1408 TCASDG--------LRVAVCQTLKTRPTALVEGVAVPTKSGLPSGMPFTSQINSIVHWIL 1459 Query 358 IKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKV 417 KC + L + + YGDD L ++ ++ + +V+ + G+ Sbjct 1460 WSATVRKC--SLPLNIGSVNELAPFLTYGDDGLYTIPSHLTKSIDE--IVSTLKGYGLSP 1515 Query 418 T---DGVDKTKVGIEFRTIEDCDFLKRKF 443 T G++ F + FLKR+ Sbjct 1516 TAPDKGMNIEIKKTSFTYMSGPVFLKRRI 1544 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p5.6; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [Feline calicivirus strain Japanese F4] Sequence ID: P27408.2 Length: 1763 Range 1: 1349 to 1668 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:87/346(25%), Positives:139/346(40%), Gaps:33/346(9%) Query 132 MEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQ 191 + F L TS G PY RK K V GEP + ++ D L W Sbjct 1349 LSAFHKLNHDTSCG-PYLGGRK-----KDHMVNGEP-DKQLLD---LLSSKWKLATQGIA 1398 Query 192 VPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPC 251 +P Y I +KDE P+ KV +E K R+ + F I P Sbjct 1399 LPHEYTIG-LKDELRPIEKV-QEGKRRMIWGCDVGVATVCAAAFKGVSDAITANHQYGPI 1456 Query 252 QVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLP---KCIMVKIAEMFSNIVGETG 308 QVGIN S + R+ + + DYS++D + I FS+ Sbjct 1457 QVGINMDSPSVEVLYQRI-KSAAKVFAVDYSKWDSTQSPRVSAASIDILRYFSDRSPIVD 1515 Query 309 AEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFET 368 + K+ +A I V +V +G+PSG PLT ++NS+ + + + A + E Sbjct 1516 SAANTLKSPPIA------IFNGVAVKVASGLPSGMPLTSVINSLNHCMYVGCAILQSLEA 1569 Query 369 ESL-IRDHFDTYVAMVVYGDDNLI---SVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKT 424 + + + + M+ YGDD + ++ ++S + GN + G+K T VDK+ Sbjct 1570 RQIPVTWNLFSSFDMMTYGDDGVYMFPTMFASVSDQIFGN-----LSAYGLKPTR-VDKS 1623 Query 425 KVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAK 470 IE E FLKR +G G++ + Q ++K + Sbjct 1624 VGAIESIDPESVVFLKRTITRTPNGI-RGLLDRSSIIRQFFYIKGE 1668 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 1879 to 2130 Score:60.1 bits(144), Expect:6e-08, Method:Compositional matrix adjust., Identities:70/273(26%), Positives:121/273(44%), Gaps:26/273(9%) Query 201 VKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFV-RFIMKRRDVLPCQVGINPYS 259 +KDE P KV + K+R+ V +++ + R F +F +L +G +P Sbjct 1879 LKDEIRPSEKV-RAGKTRIVDVPSLAHCIVGRMLLGRFAAKFQSHPGFLLGSAIGSDP-D 1936 Query 260 RQWGKVADRLLEKGNSILCCDYSRFDG-FLPKCIMVKIAEMFSNIVGETGAEREQTKNLM 318 W + +L + N+ DYS FD I+ F+ G + A ++L Sbjct 1937 VFWTVIGAQLEGRKNT-YDVDYSAFDSSHGTGSFEALISHFFTVDNGFSPALGPYLRSLA 1995 Query 319 LACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAY---WKCFETESLIRDH 375 ++ + G ++ G+PSG T ++N++LN ++I+ A +K FE + Sbjct 1996 VSVHA----YGERRIKITGGLPSGCAATSLLNTVLNNVIIRTALALTYKEFEYD------ 2045 Query 376 FDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIED 435 V ++ YGDD L+ + + N + LG K+T +K V ++ D Sbjct 2046 ---MVDIIAYGDDLLVGTDYDL----DFNEVARRAAKLGYKMTPA-NKGSVFPPTSSLSD 2097 Query 436 CDFLKRKFKENADGTWSGVMAEEHLWPQLHFVK 468 FLKRKF +N DG + VM ++L L + K Sbjct 2098 AVFLKRKFVQNNDGLYKPVMDLKNLEAMLSYFK 2130 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p5.6; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [Feline calicivirus strain F9] Sequence ID: P27409.1 Length: 1763 Range 1: 1349 to 1671 Score:60.1 bits(144), Expect:7e-08, Method:Compositional matrix adjust., Identities:89/350(25%), Positives:140/350(40%), Gaps:35/350(10%) Query 132 MEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDERILADIHWFEEISKTQ 191 + F L TS G PY RK K GEP + ++ D L W Sbjct 1349 LSAFHKLNHDTSCG-PYLGGRK-----KDHMANGEP-DKQLLD---LLSAKWKLATQGIA 1398 Query 192 VPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPC 251 +P Y I +KDE PV KV E K R+ + F I P Sbjct 1399 LPHEYTIG-LKDELRPVEKV-SEGKRRMIWGCDVGVATVCAAAFKGVSDAITANHQYGPI 1456 Query 252 QVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLP---KCIMVKIAEMFSNIVGETG 308 QVGIN S + R+ + + DYS++D + I FS+ Sbjct 1457 QVGINMDSPSVEALFQRI-KSAAKVFAVDYSKWDSTQSPRVSAASIDILRYFSDRSPIVD 1515 Query 309 AEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFET 368 + K+ +A I V +V +G+PSG PLT ++NS+ + + + A + E Sbjct 1516 SASNTLKSPPVA------IFNGVAVKVSSGLPSGMPLTSVINSLNHCLYVGCAILQSLEA 1569 Query 369 ESL--IRDHFDTYVAMVVYGDDNLIS---VSEAISSKFNGNFLVNFMCNLGIKVTDGVDK 423 +++ + F T+ M YGDD + + +IS + GN + + G+K T VDK Sbjct 1570 KAIPVTWNLFSTFDIM-TYGDDGVYMFPIMYASISDQIFGN-----LSSYGLKPTR-VDK 1622 Query 424 TKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVE 473 + IE + FLKR G G++ + Q +++K + + Sbjct 1623 SVGAIEPIDPDSVVFLKRTITRTPQGI-RGLLDRSSIIRQFYYIKGENSD 1671 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p5.6; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol [Feline calicivirus (strain Urbana)] Sequence ID: Q66914.1 Length: 1763 Range 1: 1337 to 1668 Score:57.8 bits(138), Expect:3e-07, Method:Compositional matrix adjust., Identities:92/366(25%), Positives:140/366(38%), Gaps:46/366(12%) Query 117 FGPVDLEAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEITDER 176 F PV++ + + + F L TS G PY RK K GEP + Sbjct 1337 FVPVNISSETS---MLSAFHKLNHDTSCG-PYLGGRK-----KDHMTNGEPDKPLLD--- 1384 Query 177 ILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFL 236 L W +P Y I +KDE PV KV E K R+ + F Sbjct 1385 -LLSAKWKLATQGIALPHEYTIG-LKDELRPVEKV-AEGKRRMIWGCDVGVATVCAAAFK 1441 Query 237 NFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLP---KCIM 293 I P QVGIN S + R+ + + DYS++D Sbjct 1442 GVSDAITANHQYGPVQVGINMDSPSVEALHQRI-KSAAKVYAVDYSKWDSTQSPRVSAAS 1500 Query 294 VKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSIL 353 + I FS+ + K+ +A I V +V +G+PSG PLT ++NS+ Sbjct 1501 IDILRYFSDRSPIVDSAANTLKSPPIA------IFNGVAVKVSSGLPSGMPLTSVINSLN 1554 Query 354 NEILIKYAYWKCFETES--LIRDHFDTYVAMVVYGDDNL-------ISVSEAISSKFNGN 404 + + + A + E + + F T+ M+ YGDD + SVS+ I + + Sbjct 1555 HCLYVGCAILQSLEARGVPVTWNLFSTF-DMMTYGDDGVYMFPMMFASVSDQIFANLSA- 1612 Query 405 FLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQL 464 G+K T VDK+ IE E FLKR G G++ + Q Sbjct 1613 --------YGLKPTR-VDKSVGSIEPIDPESVVFLKRTITRTPQGI-RGLLDRSSIIRQF 1662 Query 465 HFVKAK 470 +++K + Sbjct 1663 YYIKGE 1668 >RecName: Full=Genome polyprotein 1; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Barley mild mosaic virus (strain Na1)] Sequence ID: P90245.1 Length: 2258 Range 1: 1683 to 1882 Score:56.2 bits(134), Expect:1e-06, Method:Compositional matrix adjust., Identities:56/209(27%), Positives:97/209(46%), Gaps:14/209(6%) Query 212 IKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE 271 I E K+R+FT P++ +A++ +F + K P VGIN ++R W + ++L + Sbjct 1683 ILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNK 1742 Query 272 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAIC--- 328 G + D SRFD + + I ++ + + AE + + + IC Sbjct 1743 PGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFM---DAEHHKQLDTIYEEIVNTKICLAN 1799 Query 329 GRVLYRVENGIPSGFPLTVIVNS--ILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYG 386 G V+ + G SG P TV+ N+ ++ L YA +T L+ ++F V G Sbjct 1800 GLVIQK-NCGNNSGQPSTVVDNTLALMTSFLYAYARLTGDDTFELMDENF----VFVCNG 1854 Query 387 DDNLISVSEAISSKFNGNFLVNFMCNLGI 415 DDN ++S + KF +F F+ LG+ Sbjct 1855 DDNKFAMSPSFMVKFGCDF-SPFLSELGL 1882