#1
seqret -seq '*.fasta' all.fasta
#2
seqretsplit -seq coding1.fasta  cds.fasta
#5
getorf -seq coding.fasta -minsize 250 -table 5 orf.fasta
#11
makenucseq -amount 3 -length 100 randomseq.fasta
#14
degapseq -seq alignment.fasta withoutgap.fasta