########################################
# Program: matcher
# Rundate: Tue 29 Mar 2011 19:50:59
# Commandline: matcher
#    [-asequence] YCFD_ECOLI.fasta
#    [-bsequence] YXBC_BACSU.fasta
#    [-outfile] alignment4.matcher
# Align_format: markx0
# Report_file: alignment4.matcher
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: YCFD_ECOLI
# 2: YXBC_BACSU
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 41
# Identity:      13/41 (31.7%)
# Similarity:    18/41 (43.9%)
# Gaps:           0/41 ( 0.0%)
# Score: 65
# 
#
#=======================================

      120       130       140       150         
YCFD_E GGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDL
       :::   : : :   : :  : . :.. .   .     : ::
YXBC_B GGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDL
      140       150       160       170         


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