########################################
# Program: needle
# Rundate: Wed  5 Mar 2008 19:52:48
# Commandline: needle
#    -asequence gene_ecoli.fasta
#    -bsequence gene_pseudomonas.fasta
#    -outfile genes.needle
# Align_format: srspair
# Report_file: genes.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: c4119770-4118439
# 2: 5985548-5986891
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1407
# Identity:     967/1407 (68.7%)
# Similarity:   967/1407 (68.7%)
# Gaps:         138/1407 ( 9.8%)
# Score: 3197.0
# 
#
#=======================================

c4119770-4118      1 ATGTCTGAAATGACCCCACGCGAAATCGTCAGCGAACTGGATAAGCACAT     50
                     |||||   .|||||.||.|||||.||||||..||||||..|....|||||
5985548-59868      1 ATGTC---CATGACGCCCCGCGAGATCGTCCACGAACTCAACCGCCACAT     47

c4119770-4118     51 CATCGGCCAGGACAACGCCAAGCGTTCTGTGGCGATTGCTCTGCGTAACC    100
                     |||||||||||||.||||||||||..|.||.||.||.||.|||||.||||
5985548-59868     48 CATCGGCCAGGACGACGCCAAGCGCGCCGTCGCCATCGCCCTGCGCAACC     97

c4119770-4118    101 GCTGGCGTCGCATGCAGCTCAACGAAGAGCTGCGCCATGAAGTGACCCCG    150
                     |||||||.|||||||||||....|..|||||||||...||.|||||.|||
5985548-59868     98 GCTGGCGGCGCATGCAGCTGCCGGCCGAGCTGCGCGCCGAGGTGACGCCG    147

c4119770-4118    151 AAAAATATCCTGATGATCGGCCCGACCGGTGTCGGTAAAACTGAAATCGC    200
                     ||.||.|||||.|||||||||||.|||||.|||||.||.||.||.|||||
5985548-59868    148 AAGAACATCCTCATGATCGGCCCCACCGGCGTCGGCAAGACCGAGATCGC    197

c4119770-4118    201 CCGTCGTCTGGCTAAGCTGGCGAATGCGCCGTTCATCAAAGTTGAAGCGA    250
                     |||.||.|||||....||||||||.||||||||||||||.||.||.||||
5985548-59868    198 CCGGCGCCTGGCGCGCCTGGCGAACGCGCCGTTCATCAAGGTCGAGGCGA    247

c4119770-4118    251 CCAAATTCACCGAAGTGGGCTACGTCGGTAAGGAAGTGGATTCTATTATT    300
                     ||||.||||||||.||.|||||||||||....||.||.||.||.||.||.
5985548-59868    248 CCAAGTTCACCGAGGTCGGCTACGTCGGCCGCGACGTCGAGTCGATCATC    297

c4119770-4118    301 CGCGATCTGACCGATGCCGCCGTGAAAATGGTACGCGTCCAGGCTATCGA    350
                     ||||||||..||||.|||||.|||||.|||.|.||||..||||..|||.|
5985548-59868    298 CGCGATCTCGCCGACGCCGCGGTGAAGATGCTCCGCGAGCAGGAGATCCA    347

c4119770-4118    351 GAA----AAACCGTTATCGCGCTGAAGAACTGGCAGAAGAACGTATTCTC    396
                     |||    ||    .||.|||||.||.||....||.||.||.||.||.|||
5985548-59868    348 GAAGGTCAA----GTACCGCGCCGAGGACGCCGCCGAGGAGCGCATCCTC    393

c4119770-4118    397 GACG---TGCTGATCCC--------ACCTGCTAAAAACAACTGGG-----    430
                     ||||   |||||  |||        .||.||.|        ||||     
5985548-59868    394 GACGCCCTGCTG--CCCGCCGCGCGTCCCGCCA--------TGGGCTTCG    433

c4119770-4118    431 --GAC-AGAC------CGA--ACAGCAGCAGGAACCGTCCGCTGCTCGTC    469
                       ||| ||.|      |||  ||||||.|   |.|||.|.||||      
5985548-59868    434 GCGACGAGCCGGCGCGCGAGGACAGCAAC---ACCCGCCAGCTG------    474

c4119770-4118    470 AGGCATTCCGCAAAAAACTGCGTGAAGGCCAGCTTGATGACAAAGAAATC    519
                          ||||||||....|||||.|||||||||||.||.|||||.||||||
5985548-59868    475 -----TTCCGCAAGCGCCTGCGCGAAGGCCAGCTGGACGACAAGGAAATC    519

c4119770-4118    520 GAGATCGATCTTGCCGCAGCA--CCGATGGGCGTTGAAATTATGGCTCCT    567
                     ||.|||||..|.||||  .||  |||...|||||.||.||.||||||||.
5985548-59868    520 GACATCGAGGTGGCCG--ACAATCCGGCCGGCGTCGAGATCATGGCTCCG    567

c4119770-4118    568 CCGGGCATGGAAGAGATGACCAGCCAGCTGCAGTCCATGT--TCCAGAAC    615
                     ||.||||||||.||||||||||.||||||||||..|.|||  |||.|  |
5985548-59868    568 CCCGGCATGGAGGAGATGACCAACCAGCTGCAGAACCTGTTCTCCGG--C    615

c4119770-4118    616 CTGGGC---GGCCAGAAGCAAAAAG-CGCGTAAGCTGAAAATCAAAGACG    661
                     .||.||   |||.|||||    ||| |.||.||||||||..||...||.|
5985548-59868    616 ATGAGCAAGGGCAAGAAG----AAGACCCGCAAGCTGAAGGTCGCCGATG    661

c4119770-4118    662 CCATGAAGCTGCTGATTGAAGAAGAAGCGGCGAAACTGGTGAACCCGGAA    711
                     ||.|||||.||.|....||.||.||.|||||....|||||.|||..||||
5985548-59868    662 CCCTGAAGATGATCCGCGACGAGGAGGCGGCACGCCTGGTCAACGAGGAA    711

c4119770-4118    712 GAGCTGAAGCAAG----ACGCTATCGACGCTGTTGAGCAGCACGGGATCG    757
                     |||||    ||||    .|||..|.||.||.||.|||||||||||.||||
5985548-59868    712 GAGCT----CAAGGCCCGCGCCCTGGAAGCGGTGGAGCAGCACGGCATCG    757

c4119770-4118    758 TGTTTATCGACGAAATCGACAAAATCTGTAAGCGCGGCGAGTCTTCCGGT    807
                     |.||.||||||||.||||||||.|||...|||||||.|.|..|...|||.
5985548-59868    758 TCTTCATCGACGAGATCGACAAGATCGCCAAGCGCGCCAACGCCGGCGGC    807

c4119770-4118    808 CCGGATGTTTCTCGTGAAGGCGTTCAGCGTGACCTGCTGCCGCTGGTAGA    857
                     .|.||.||.||.||.||.|||||.|||||.|||||||||||||||.|.||
5985548-59868    808 GCCGACGTCTCCCGCGAGGGCGTGCAGCGCGACCTGCTGCCGCTGATCGA    857

c4119770-4118    858 AGGTTGCACCGTTTCCACCAAACACGGGATGGTCAAAACTGACCACATTC    907
                     .||.|||||.||...||||||.|..||.||||||||.||.|||||.||.|
5985548-59868    858 GGGCTGCACGGTGAACACCAAGCTGGGCATGGTCAAGACCGACCATATCC    907

c4119770-4118    908 TGTTTATCGCTTCTGGCGCGTTCCA---GATTGCGAAACCGTCTGACCTG    954
                     ||||.|||||.||.|||||.|||||   ||  || ||||||...||||||
5985548-59868    908 TGTTCATCGCCTCCGGCGCCTTCCACCTGA--GC-AAACCGAGCGACCTG    954

c4119770-4118    955 ATCCCGGAACTGCAAGGTCGTCTGCCAATCCGCGTTGAACTGCAGGCGCT   1004
                     .|||||||||||||.||.||.|||||.||||||||.|||||..||||.||
5985548-59868    955 GTCCCGGAACTGCAGGGCCGCCTGCCGATCCGCGTGGAACTCAAGGCCCT   1004

c4119770-4118   1005 GACCACCAGCGACTTCGAGCGTATTCTGACCGAGCCGAATGCCTCTATCA   1054
                     .|.|.|.|.||||||||||||.||.||.|||||||||.|.|||||..|||
5985548-59868   1005 CAGCCCGAACGACTTCGAGCGGATCCTCACCGAGCCGCACGCCTCGCTCA   1054

c4119770-4118   1055 CCGTGCAGTAC-----------AAAGCACTGATGGCGACTGAAGGCGTAA   1093
                     |||.|||||||           .||| ||.||.|||  |||  |||    
5985548-59868   1055 CCGAGCAGTACCGCGAGTTGCTCAAG-ACCGAGGGC--CTG--GGC----   1095

c4119770-4118   1094 ATATCGAGTTTACCGACTCCGGTATTAAACGCATCGCGGA-AGCGGCATG   1142
                       ||||||||..||||...||||||.||.||..||||.|| |.| ||.||
5985548-59868   1096 --ATCGAGTTCGCCGAGGACGGTATCAAGCGTCTCGCCGAGATC-GCCTG   1142

c4119770-4118   1143 GCAGGTGAACGAATCTACCGAAAACATCGGTGCTCGTCGTTTACACACTG   1192
                     ||||||.|||||....|||||.|||||||||||.||.||..|.||.||..
5985548-59868   1143 GCAGGTCAACGAGAAGACCGAGAACATCGGTGCCCGGCGCCTGCATACGC   1192

c4119770-4118   1193 TTCTGGAGCGTTTAATGGAAGAGATTT---------CCTACGAC---GCC   1230
                     |.||.|||||..|..||||||||.|.|         ||..||||   |||
5985548-59868   1193 TGCTCGAGCGACTGCTGGAAGAGGTGTCGTTCAGCGCCGCCGACCTGGCC   1242

c4119770-4118   1231 AGCGATTTAAGCGGTCAAAA---TATCACTATTGACGCAGATTATGTGAG   1277
                     |||||....||||   |.||   .|||...||.|||||.|..||.||.|.
5985548-59868   1243 AGCGAGCACAGCG---ACAAGCCGATCCGGATCGACGCCGGCTACGTCAA   1289

c4119770-4118   1278 CAAACATCTGGATGCG--TTGGTGGCAGATGAAGATCTGAGCCGTTTTAT   1325
                     ||..||.||||  |||  .|||..|..||.||.||.|||..|||.|.|||
5985548-59868   1290 CAGCCACCTGG--GCGAACTGGCCGAGGACGAGGACCTGTCCCGCTATAT   1337

c4119770-4118   1326 CCTATAA   1332
                     |||.|.|
5985548-59868   1338 CCTCTGA   1344


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