########################################
# Program:  needle
# Rundate:  Sun May 04 01:30:52 2008
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/needle-20080504-01305172362348.output
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: c4119770-4118439
# 2: 5985548-5986891
# Matrix: EDNAFULL
# Gap_penalty: 20.0
# Extend_penalty: 0.5
#
# Length: 1361
# Identity:     937/1361 (68.8%)
# Similarity:   937/1361 (68.8%)
# Gaps:          46/1361 ( 3.4%)
# Score: 3033.0
# 
#
#=======================================

c4119770-4118      1 ATGTCTGAAATGACCCCACGCGAAATCGTCAGCGAACTGGATAAGCACAT     50
                     |||||   .|||||.||.|||||.||||||..||||||..|....|||||
5985548-59868      1 ATGTC---CATGACGCCCCGCGAGATCGTCCACGAACTCAACCGCCACAT     47

c4119770-4118     51 CATCGGCCAGGACAACGCCAAGCGTTCTGTGGCGATTGCTCTGCGTAACC    100
                     |||||||||||||.||||||||||..|.||.||.||.||.|||||.||||
5985548-59868     48 CATCGGCCAGGACGACGCCAAGCGCGCCGTCGCCATCGCCCTGCGCAACC     97

c4119770-4118    101 GCTGGCGTCGCATGCAGCTCAACGAAGAGCTGCGCCATGAAGTGACCCCG    150
                     |||||||.|||||||||||....|..|||||||||...||.|||||.|||
5985548-59868     98 GCTGGCGGCGCATGCAGCTGCCGGCCGAGCTGCGCGCCGAGGTGACGCCG    147

c4119770-4118    151 AAAAATATCCTGATGATCGGCCCGACCGGTGTCGGTAAAACTGAAATCGC    200
                     ||.||.|||||.|||||||||||.|||||.|||||.||.||.||.|||||
5985548-59868    148 AAGAACATCCTCATGATCGGCCCCACCGGCGTCGGCAAGACCGAGATCGC    197

c4119770-4118    201 CCGTCGTCTGGCTAAGCTGGCGAATGCGCCGTTCATCAAAGTTGAAGCGA    250
                     |||.||.|||||....||||||||.||||||||||||||.||.||.||||
5985548-59868    198 CCGGCGCCTGGCGCGCCTGGCGAACGCGCCGTTCATCAAGGTCGAGGCGA    247

c4119770-4118    251 CCAAATTCACCGAAGTGGGCTACGTCGGTAAGGAAGTGGATTCTATTATT    300
                     ||||.||||||||.||.|||||||||||....||.||.||.||.||.||.
5985548-59868    248 CCAAGTTCACCGAGGTCGGCTACGTCGGCCGCGACGTCGAGTCGATCATC    297

c4119770-4118    301 CGCGATCTGACCGATGCCGCCGTGAAAATGGTACGCGTCCAGGCTATCGA    350
                     ||||||||..||||.|||||.|||||.|||.|.||||..||||..|||.|
5985548-59868    298 CGCGATCTCGCCGACGCCGCGGTGAAGATGCTCCGCGAGCAGGAGATCCA    347

c4119770-4118    351 GAAAAACCGTTATCGCGCTGAAGAACTGGCAGAAGAACGTATTCTCGACG    400
                     |||...|...||.|||||.||.||....||.||.||.||.||.|||||||
5985548-59868    348 GAAGGTCAAGTACCGCGCCGAGGACGCCGCCGAGGAGCGCATCCTCGACG    397

c4119770-4118    401 TGCTGATCCCACCTGCTAAAAACAACTGGGGACAGACCGAACAG------    444
                     ..|||.|.||..|.||......|..|..|||......|||..||      
5985548-59868    398 CCCTGCTGCCCGCCGCGCGTCCCGCCATGGGCTTCGGCGACGAGCCGGCG    447

c4119770-4118    445 --------CAGCAGGAACCGTCCGCTGCTCGTCAGGCATTCCGCAAAAAA    486
                             |||||..|.|||.|.||||           ||||||||....
5985548-59868    448 CGCGAGGACAGCAACACCCGCCAGCTG-----------TTCCGCAAGCGC    486

c4119770-4118    487 CTGCGTGAAGGCCAGCTTGATGACAAAGAAATCGAGATCGATCTTGCCGC    536
                     |||||.|||||||||||.||.|||||.||||||||.|||||..|.||||.
5985548-59868    487 CTGCGCGAAGGCCAGCTGGACGACAAGGAAATCGACATCGAGGTGGCCGA    536

c4119770-4118    537 AGCACCGATGGGCGTTGAAATTATGGCTCCTCCGGGCATGGAAGAGATGA    586
                     ....|||...|||||.||.||.||||||||.||.||||||||.|||||||
5985548-59868    537 CAATCCGGCCGGCGTCGAGATCATGGCTCCGCCCGGCATGGAGGAGATGA    586

c4119770-4118    587 CCAGCCAGCTGCAGTCCATGTTCCAGAACCTGGGC---GGCCAGAAGCAA    633
                     |||.||||||||||..|.|||||.....|.||.||   |||.|||||   
5985548-59868    587 CCAACCAGCTGCAGAACCTGTTCTCCGGCATGAGCAAGGGCAAGAAG---    633

c4119770-4118    634 AAAGCGCGTAAGCTGAAAATCAAAGACGCCATGAAGCTGCTGATTGAAGA    683
                     ||..|.||.||||||||..||...||.|||.|||||.||.|....||.||
5985548-59868    634 AAGACCCGCAAGCTGAAGGTCGCCGATGCCCTGAAGATGATCCGCGACGA    683

c4119770-4118    684 AGAAGCGGCGAAACTGGTGAACCCGGAAGAGCTGAAGCAAGACGCTATCG    733
                     .||.|||||....|||||.|||..|||||||||.|||.....|||..|.|
5985548-59868    684 GGAGGCGGCACGCCTGGTCAACGAGGAAGAGCTCAAGGCCCGCGCCCTGG    733

c4119770-4118    734 ACGCTGTTGAGCAGCACGGGATCGTGTTTATCGACGAAATCGACAAAATC    783
                     |.||.||.|||||||||||.|||||.||.||||||||.||||||||.|||
5985548-59868    734 AAGCGGTGGAGCAGCACGGCATCGTCTTCATCGACGAGATCGACAAGATC    783

c4119770-4118    784 TGTAAGCGCGGCGAGTCTTCCGGTCCGGATGTTTCTCGTGAAGGCGTTCA    833
                     ...|||||||.|.|..|...|||..|.||.||.||.||.||.|||||.||
5985548-59868    784 GCCAAGCGCGCCAACGCCGGCGGCGCCGACGTCTCCCGCGAGGGCGTGCA    833

c4119770-4118    834 GCGTGACCTGCTGCCGCTGGTAGAAGGTTGCACCGTTTCCACCAAACACG    883
                     |||.|||||||||||||||.|.||.||.|||||.||...||||||.|..|
5985548-59868    834 GCGCGACCTGCTGCCGCTGATCGAGGGCTGCACGGTGAACACCAAGCTGG    883

c4119770-4118    884 GGATGGTCAAAACTGACCACATTCTGTTTATCGCTTCTGGCGCGTTCCAG    933
                     |.||||||||.||.|||||.||.|||||.|||||.||.|||||.|||||.
5985548-59868    884 GCATGGTCAAGACCGACCATATCCTGTTCATCGCCTCCGGCGCCTTCCAC    933

c4119770-4118    934 ATTGCGAAACCGTCTGACCTGATCCCGGAACTGCAAGGTCGTCTGCCAAT    983
                     .|....||||||...||||||.|||||||||||||.||.||.|||||.||
5985548-59868    934 CTGAGCAAACCGAGCGACCTGGTCCCGGAACTGCAGGGCCGCCTGCCGAT    983

c4119770-4118    984 CCGCGTTGAACTGCAGGCGCTGACCACCAGCGACTTCGAGCGTATTCTGA   1033
                     ||||||.|||||..||||.||.|.|.|.|.||||||||||||.||.||.|
5985548-59868    984 CCGCGTGGAACTCAAGGCCCTCAGCCCGAACGACTTCGAGCGGATCCTCA   1033

c4119770-4118   1034 CCGAGCCGAATGCCTCTATCACCGTGCAGTACAAAGCACTGATGGCGACT   1083
                     ||||||||.|.|||||..||||||.|||||||...|...||.|...|||.
5985548-59868   1034 CCGAGCCGCACGCCTCGCTCACCGAGCAGTACCGCGAGTTGCTCAAGACC   1083

c4119770-4118   1084 GAAGGCGTAAATATCGAGTTTACCGACTCCGGTATTAAACGCATCGCGGA   1133
                     ||.|||.|....||||||||..||||...||||||.||.||..||||.||
5985548-59868   1084 GAGGGCCTGGGCATCGAGTTCGCCGAGGACGGTATCAAGCGTCTCGCCGA   1133

c4119770-4118   1134 AGCGGCATGGCAGGTGAACGAATCTACCGAAAACATCGGTGCTCGTCGTT   1183
                     ....||.||||||||.|||||....|||||.|||||||||||.||.||..
5985548-59868   1134 GATCGCCTGGCAGGTCAACGAGAAGACCGAGAACATCGGTGCCCGGCGCC   1183

c4119770-4118   1184 TACACACTGTTCTGGAGCGTTTAATGGAAGAGATTT------------CC   1221
                     |.||.||..|.||.|||||..|..||||||||.|.|            ||
5985548-59868   1184 TGCATACGCTGCTCGAGCGACTGCTGGAAGAGGTGTCGTTCAGCGCCGCC   1233

c4119770-4118   1222 TACGACGCCAGCGATTTAAGCGGTCAAAATATCACTATTGACGCAGATTA   1271
                     .||...||||||||....||||...|....|||...||.|||||.|..||
5985548-59868   1234 GACCTGGCCAGCGAGCACAGCGACAAGCCGATCCGGATCGACGCCGGCTA   1283

c4119770-4118   1272 TGTGAGCAAACATCTGGATGCGTTGGTGGCAGATGAAGATCTGAGCCGTT   1321
                     .||.|.||..||.||||..|...|||..|..||.||.||.|||..|||.|
5985548-59868   1284 CGTCAACAGCCACCTGGGCGAACTGGCCGAGGACGAGGACCTGTCCCGCT   1333

c4119770-4118   1322 TTATCCTATAA   1332
                     .||||||.|.|
5985548-59868   1334 ATATCCTCTGA   1344


#---------------------------------------
#---------------------------------------