PAL2NAL output

>HSLU_ECOLI
TCTGAAATGACCCCACGCGAAATCGTCAGCGAACTGGATAAGCACATCATCGGCCAGGAC
AACGCCAAGCGTTCTGTGGCGATTGCTCTGCGTAACCGCTGGCGTCGCATGCAGCTCAAC
GAAGAGCTGCGCCATGAAGTGACCCCGAAAAATATCCTGATGATCGGCCCGACCGGTGTC
GGTAAAACTGAAATCGCCCGTCGTCTGGCTAAGCTGGCGAATGCGCCGTTCATCAAAGTT
GAAGCGACCAAATTCACCGAAGTGGGCTACGTCGGTAAGGAAGTGGATTCTATTATTCGC
GATCTGACCGATGCCGCCGTGAAAATGGTACGCGTCCAGGCTATCGAGAAAAACCGTTAT
CGCGCTGAAGAACTGGCAGAAGAACGTATTCTCGACGTGCTGATCCCACCTGCTAAAAAC
AACTGGGGACAGACCGAACAGCAGCAGGAACCGTCCGCTGCTCGTCAGGCATTCCGCAAA
AAACTGCGTGAAGGCCAGCTTGATGACAAAGAAATCGAGATCGATCTTGCCGCAGCACCG
ATGGGCGTTGAAATTATGGCTCCTCCGGGCATGGAAGAGATGACCAGCCAGCTGCAGTCC
ATGTTCCAGAACCTGGGCGGCCAGAAGCAAAAAGCGCGTAAGCTGAAAATCAAAGACGCC
ATGAAGCTGCTGATTGAAGAAGAAGCGGCGAAACTGGTGAACCCGGAAGAGCTGAAGCAA
GACGCTATCGACGCTGTTGAGCAGCACGGGATCGTGTTTATCGACGAAATCGACAAAATC
TGTAAGCGCGGCGAGTCTTCCGGTCCGGATGTTTCTCGTGAAGGCGTTCAGCGTGACCTG
CTGCCGCTGGTAGAAGGTTGCACCGTTTCCACCAAACACGGGATGGTCAAAACTGACCAC
ATTCTGTTTATCGCTTCTGGCGCGTTCCAGATTGCGAAACCGTCTGACCTGATCCCGGAA
CTGCAAGGTCGTCTGCCAATCCGCGTTGAACTGCAGGCGCTGACCACCAGCGACTTCGAG
CGTATTCTGACCGAGCCGAATGCCTCTATCACCGTGCAGTACAAAGCACTGATGGCGACT
GAAGGCGTAAATATCGAGTTTACCGACTCCGGTATTAAACGCATCGCGGAAGCGGCATGG
CAGGTGAACGAATCTACCGAAAACATCGGTGCTCGTCGTTTACACACTGTTCTGGAGCGT
TTAATGGAAGAGATTTCCTACGACGCCAGCGATTTAAGCGGTCAAAATATCACTATTGAC
GCAGATTATGTGAGCAAACATCTGGATGCGTTGGTGGCAGATGAAGATCTGAGCCGTTTT
ATCCTA
>HSLU_PSEA7
ATGTCCATGACGCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGAC
GACGCCAAGCGCGCCGTCGCCATCGCCCTGCGCAACCGCTGGCGGCGCATGCAGCTGCCG
GCCGAGCTGCGCGCCGAGGTGACGCCGAAGAACATCCTCATGATCGGCCCCACCGGCGTC
GGCAAGACCGAGATCGCCCGGCGCCTGGCGCGCCTGGCGAACGCGCCGTTCATCAAGGTC
GAGGCGACCAAGTTCACCGAGGTCGGCTACGTCGGCCGCGACGTCGAGTCGATCATCCGC
GATCTCGCCGACGCCGCGGTGAAGATGCTCCGCGAGCAGGAGATCCAGAAGGTCAAGTAC
CGCGCCGAGGACGCCGCCGAGGAGCGCATCCTCGACGCCCTGCTGCCCGCCGCGCGTCCC
GCCATGGGCGGCGACGAGCCGGCGCGCGAGGACAGCAACACCCGCCAGCTGTTCCGCAAG
CGCCTGCGCGAAGGCCAGCTGGACGACAAGGAAATCGACATCGAGGTGGCCGACAATCCG
GCCGGCGTCGAGATCATGGCTCCGCCCGGCATGGAGGAGATGACCAACCAGCTGCAGAAC
CTGTTCTCCGGCATGAGCAAGGGCAAGAAGAAGACCCGCAAGCTGAAGGTCGCCGATGCC
CTGAAGATGATCCGCGACGAGGAGGCGGCACGCCTGGTCAACGAGGAAGAGCTCAAGGCC
CGCGCCCTGGAAGCGGTGGAGCAGCACGGCATCGTCTTCATCGACGAGATCGACAAGATC
GCCAAGCGCGCCAACGCCGGCGGCGCCGACGTCTCCCGCGAGGGCGTGCAGCGCGACCTG
CTGCCGCTGATCGAGGGCTGCACGGTGAACACCAAGCTGGGCATGGTCAAGACCGACCAT
ATCCTGTTCATCGCCTCCGGCGCCTTCCACCTGAGCAAACCGAGCGACCTGGTCCCGGAA
CTGCAGGGCCGCCTGCCGATCCGCGTGGAACTCAAGGCCCTCAGCCCGAACGACTTCGAG
CGGATCCTCACCGAGCCGCACGCCTCGCTCACCGAGCAGTACCGCGAGTTGCTCAAGACC
GAGGGCCTGGGCATCGAGTTCGCCGAGGACGGTATCAAGCGTCTCGCCGAGATCGCCTGG
CAGGTCAACGAGAAGACCGAGAACATCGGTGCCCGGCGCCTGCATACGCTGCTCGAGCGA
CTGCTGGAAGAGGTGTCGTTCAGCGCCGCCGACCTGGCCAGCGAGCACATCCGGATCGAC
GCCGGCTACGTCAACAGCCACCTGGGCGAACTGGCCGAGGACGAGGACCTGTCCCGCTAT
ATCCTC
Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package:
KS = 66.7203
KA = 0.1876
KA/KS = 0.0028
You can see the parameters used in codeml to calculate these values.
If you use these values, please cite the following peper:
  • Goldman, N. and Yang, Z. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Molecular Biology and Evolution 11:725-736.