RID: 6FYWJ0UB013 Job Title:POLN_CHIK3 Q5XXP4 (Protease nsP2) (3.1.3.33 Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POLN_CHIK3 Q5XXP4 (Protease nsP2) (3.1.3.33 {ECO:0000250|UniProtKB:P08411}) Query ID: lcl|Query_21140 Length: 798 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 1686 1686 100% 0.0 100.00 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 1657 1657 100% 0.0 97.74 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 1578 1578 100% 0.0 91.60 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 1574 1574 100% 0.0 91.35 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 1568 1568 100% 0.0 91.10 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1252 1252 100% 0.0 72.84 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 1222 1222 100% 0.0 70.96 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1197 1197 100% 0.0 70.09 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1196 1196 100% 0.0 70.09 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1190 1190 100% 0.0 69.34 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 1086 1086 99% 0.0 63.99 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 979 979 99% 0.0 58.40 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 971 971 99% 0.0 57.90 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 942 942 99% 0.0 57.50 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 938 938 100% 0.0 56.30 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 936 936 100% 0.0 56.07 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 934 934 100% 0.0 56.07 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 934 934 100% 0.0 56.20 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 931 931 98% 0.0 56.86 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 929 929 100% 0.0 56.07 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 929 929 99% 0.0 56.23 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 927 927 99% 0.0 56.23 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 914 914 96% 0.0 56.61 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 645 645 95% 0.0 44.54 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 637 637 95% 0.0 44.42 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 79.7 79.7 35% 6e-14 27.92 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 79.0 79.0 35% 1e-13 27.48 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 67.0 67.0 30% 6e-10 28.89 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 59.3 59.3 31% 1e-07 26.47 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 56.2 56.2 32% 1e-06 27.86 1601 Q88920.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 51.2 51.2 30% 4e-05 24.01 3094 Q08534.2 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 50.8 50.8 33% 5e-05 26.60 1597 Q66220.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1333 Score:1686 bits(4365), Expect:0.0, Method:Compositional matrix adjust., Identities:798/798(100%), Positives:798/798(100%), Gaps:0/798(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV Sbjct 1256 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 781 MNNQLNAAFVGQATRAGC 798 MNNQLNAAFVGQATRAGC Sbjct 1316 MNNQLNAAFVGQATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1333 Score:1657 bits(4292), Expect:0.0, Method:Compositional matrix adjust., Identities:780/798(98%), Positives:792/798(99%), Gaps:0/798(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVEAYDGR+LVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIA+HGPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGL+IRPACPYK A Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEI+TDVMRQR LEISARTVDSLLLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGIC+HQ+TFDTFQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 KSLVPILETAGIKLNDRQWSQIIQAFKED+AYSPEVALNEICTRMYGVDLDSGLFSKPLV Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 SV+YADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWN NKQICVTTRRIEDFNP TN Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSG +L LPTKRVTWVAPLG+R Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GADYTYNLELGLPATLGRYDLV+INIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADRTSERV+CVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV Sbjct 1256 SLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 781 MNNQLNAAFVGQATRAGC 798 MNNQLNAAFVGQATRAGC Sbjct 1316 MNNQLNAAFVGQATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1333 Score:1578 bits(4085), Expect:0.0, Method:Compositional matrix adjust., Identities:731/798(92%), Positives:771/798(96%), Gaps:0/798(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 GI+ETPRGAIKVTAQP+D VVGEYLVL+PQ VLRSQKLSLIHALAEQVKTCTHSGRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVEAYDGR+LVPSGYAI EDFQSLSESATMV+NEREFVNRKLHHIA+HGPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ELVR E+TEHEYVYDVDQ++CCK+EEA GLVLVGDLT+PPYHEFAYEGL+IRPACPYKTA Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEIS DVMRQR LEISARTVDSLLLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GCN+PV+VLYVDEAFACHSGTLLALIA+VRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQVYHKSISRRCTLPVTAIVSSLHYE KMRTTNEYN+PIVVDTTG TKP+PGDLVLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 L+WKTLSGDPWIK LQNPPKGNFKATIKEWE EHASIMAGICNHQ+ FDTFQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LVPIL+TAGIKL+DRQWSQI+QAFKEDRAYSPEVALNEICTR+YGVDLDSGLFSKPL+ Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 SV+YADNHWDNRPGGKMFGFNPE A +LE+KYPFTKGKWN NKQIC+TTR++++FNP TN Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIPANRRLPHSLVAEH V+GERMEWLVNKINGHH+LLVSGYNL+LPTKRVTWVAPLG R Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GADYTYNLELGLPATLGRYDLV+INIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADRTSERV+ VLGRKFRSSRALKP C+TSNTEMFFLFS FDNGRRNFTTHV Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 781 MNNQLNAAFVGQATRAGC 798 MNNQLNA + G ATRAGC Sbjct 1316 MNNQLNAVYAGLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1333 Score:1574 bits(4076), Expect:0.0, Method:Compositional matrix adjust., Identities:729/798(91%), Positives:771/798(96%), Gaps:0/798(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 GI+ETPRGAIKVTAQP+D VVGEYLVL+PQ VLRSQKL LIHALAEQVKTCTHSGRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVEAYDGR+LVPSGYAI EDFQSLSESATMV+NEREFVNRKLHHIA+HGPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ELVR E+TEHEYVYDVDQ++CCK+EEA GLVLVGDLT+PPYHEFAYEGL+IRPACPYKTA Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEIS DVMRQR LEISARTVDSLLLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GCN+PV+VLYVDEAFACHSGTLLALIA+VRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQVYHKSISRRCTLPVTAIVSSLHYE KMRTTNEYN+PIVVDTTG+TKP+PGDLVLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 L+WKTLSGDPWIK LQNPPKGNFKATIKEWE EHASIMAGICN+Q+ FDTFQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LVPIL+TAGIKL+DRQWSQI+QAFKEDRAYSPEVALNEICTR+YGVDLDSGLFSKPL+ Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 SV+YADNHWDNRPGGKMFGFNPE A +LE+KYPFTKGKWN NKQIC+TTR++++FNP TN Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIPANRRLPHSLVAEH V+GERMEWLVNKINGHH+LLVSGYNL+LPTKRVTWVAPLG R Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GADYTYNLELGLPATLGRYDLV+INIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADRTSERV+ VLGRKFRSSRALKP C+TSNTEMFFLFS FDNGRRNFTTHV Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 781 MNNQLNAAFVGQATRAGC 798 MNNQLNA + G ATRAGC Sbjct 1316 MNNQLNAVYAGLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1333 Score:1568 bits(4059), Expect:0.0, Method:Compositional matrix adjust., Identities:727/798(91%), Positives:769/798(96%), Gaps:0/798(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 GI+ETPRGAIKVTAQP+D VVGEYLVL+PQ VLRSQKLSLIHALAEQVKTCTHSGRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVEAYDGR+LVPSGYAI EDFQSLSESATMV+NEREFVNRKLHHIA+HGPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ELVR E+TEHEYVYDVDQ++CCK+EEA GLVLVGDLT+PPYHEFAYEGL+IRPACPYKTA Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEIS DVMRQR LEISARTVDSLLLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GCN+PV+VLYVDEAFACHSGTLLALIA+VRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQVYHKSISRRCTLPVTAIVSSLHYE KMRTTNEYN+PIVVDTTG TKP+PGDLVLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRTEGK Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 L WKTLSGDPWIK LQNPPKG+FKATIKEWE EHASIMAGICNHQ+ FDTFQNKANVCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LVPIL+TAGIKL+DRQWSQI+QAFKEDRAYSPEVALNEICTR+YGVDLDSGLFSKPL+ Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 SV+YADNHWDNRPGGKMFGFNPE A +LE+KYPFTKGKWN NKQIC+TTR++++FNP TN Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIPANRRLPHSLVAEH V+GERMEWLVNKI+GHH+LLVSG+NL+LPTKRVTWVAPLG R Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GADYTYNLELGLPATLGRYDLV+INIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADRTSERV+ VLGRKFRSSRALKP C+TSNTEMFFLFS FDNGRRNFTTHV Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 781 MNNQLNAAFVGQATRAGC 798 MNNQLNA + G ATRAGC Sbjct 1316 MNNQLNAVYAGLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1336 Score:1252 bits(3240), Expect:0.0, Method:Compositional matrix adjust., Identities:582/799(73%), Positives:678/799(84%), Gaps:1/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR A+KVTAQP D ++G Y+VLSPQTVL+S KL+ +H LAEQVK TH+GRAGRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 V+ YDGR+L+P G AI +FQ+LSESATMVYNEREFVNRKL+HIA+HGP+LNTDEE+Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E VRAERT+ EYV+DVD++ C K+EEA+GLVLVG+LTNPP+HEFAYEGL+IRP+ PYKT Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 V+GVFGVPGSGKSAIIK+LVT+ DLVTSGKKENCQEI DV + R L+I A+TVDS+LLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC R VD+LYVDEAFACHSGTLLALIALV+PR KVVLCGDPKQCGFFNMMQ+KVN+NHNI Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+V HKSISRRCT PVTAIVS+LHY GKMRTTN NKPI++DTTG TKP PGD+VLTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQ+DYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYA SEHVNVLLTRTE + Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTL+GDPWIK L N P+GNF AT++EW+ EH IM I D FQNKANVCWA Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANVCWA 1017 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 KSLVP+L+TAGI+L +WS II AFKEDRAYSP VALNEICT+ YGVDLDSGLFS P V Sbjct 1018 KSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPKV 1077 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 S++Y +NHWDNRPGG+M+GFN A+ LE ++ F KG+W+T KQ + R+I+ + N Sbjct 1078 SLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLDN 1137 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 +IP NRRLPH+LVAE++ VKG R+EWLVNK+ G+HVLLVS YNL LP +RVTW++PL + Sbjct 1138 VIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPLNVT 1197 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GAD Y+L LGLPA GR+DLV +NIHT FRIHHYQQCVDHAMKLQMLGGD+LRLLKPGG Sbjct 1198 GADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPGG 1257 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLL+RAYGYAD+ SE VV L RKF S+R L+P CVTSNTE+F LFSNFDNG+R T H Sbjct 1258 SLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLHQ 1317 Query 781 MNNQLNAAFVGQATR-AGC 798 MN +L+A + G+A AGC Sbjct 1318 MNTKLSAVYAGEAMHTAGC 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1334 Score:1222 bits(3162), Expect:0.0, Method:Compositional matrix adjust., Identities:567/799(71%), Positives:669/799(83%), Gaps:2/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR A+KVT Q D +VG YLVLSPQTVL+S KL +H LAE VK TH GRAGRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 V+AYDGR+L+P+G AI DFQ+LSESATMVYNEREF+NRKL+HIA+HG ALNTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E VRAE T+ EYVYDVD+++C K+EEA GLV++GDL NPP+HEFAYEGL+ RPA PYKT Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 V+GVFGVPGSGKS IIK+LVTR DLV SGKKENCQEI DV R R+L+++A+TVDS+LLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G + VDVLYVDEAFACH+GTLLALIA VRPR+KVVLCGDPKQCGFFN+MQ++VN+NHNI Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+V HKSISRRCTLP+TAIVS+LHYEG+MRTTN YNKP+++DTTG TKP+ D+VLTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQ+DYRGHEVMTAAASQGLTRKGVYAVR KVNENPLYA +SEHVNVLLTRTEG+ Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIKTL N PKGNF AT+++W+ EH +IM I D FQNKA VCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LVP+LETAGIKL+ WS II AFKEDRAYSPEVALNEICT++YGVDLDSGLFS P V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 S+HY NHWDN PGG+M+GF+ EAA+ LE+++PF +G+W + Q+ V R+ + + N Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASG-QVLVAERKTQPIDVTCN 1135 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 +IP NRRLPH+LV E+ P+KGER+EWLVNKI G+HVLLVS YNL+LP ++VTW+AP + Sbjct 1136 LIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAPPTVT 1195 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GAD TY+L+LGLP GRYDLV +N+HTP+R+HHYQQCVDHAMKLQMLGGD+L LLKPGG Sbjct 1196 GADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPGG 1255 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLL+ Y YADRTSE VV L R+F S RA+ CVTSNTE+F LF+NFDNGRR T H Sbjct 1256 SLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTVTLHQ 1315 Query 781 MNNQLNAAFVGQATR-AGC 798 N +L++ + G + AGC Sbjct 1316 TNGKLSSIYAGTVLQAAGC 1334 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1332 Score:1197 bits(3098), Expect:0.0, Method:Compositional matrix adjust., Identities:560/799(70%), Positives:656/799(82%), Gaps:2/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR A+KVT Q DH++G YL+LSPQTVL+S+KL+ IH LAEQV THSGR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 V+ YDGR+L+P+G AI +FQ+LSESATMVYNEREF+NRKLHHIAL+GPALNTDEESY Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E VRAER E EYV+DVD++ C KKEEA+GLVL GDL NPP+HEFAYEGL+IRPA PY T Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI DV RQR L+++ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC R V+ LYVDEAFACHSGTLLALIALVRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+GKMRTTN N PI +DTTGS+KP GD+VLTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIK L N P+G+F AT++EW+ EH IM + D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LV +LETAGI++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS V Sbjct 1015 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 S+ Y +NHWDNRPGG+M+GFN E A ++PF +G N+ Q+ V R+++ F+ N Sbjct 1074 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 I+P+NRRLPH+LV ++ +GER+EWL+ KI GH +LLVS YNL +P KRV W+AP + Sbjct 1134 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVS 1193 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1194 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 1253 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLL+RAYGYADR SE VV L RKF + R L+P CVTSNTE+F LFSNFDNGRR T H Sbjct 1254 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 1313 Query 781 MNNQLNAAFVGQATR-AGC 798 N +L++ + AGC Sbjct 1314 ANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1332 Score:1196 bits(3095), Expect:0.0, Method:Compositional matrix adjust., Identities:560/799(70%), Positives:656/799(82%), Gaps:2/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR A+KVT Q DH++G YL+LSPQTVL+S+KL+ IH LAEQV THSGR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 V+ YDGR+L+P+G AI +FQ+LSESATMVYNEREF+NRKLHHIAL+GPALNTDEESY Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E VRAER E EYV+DVD++ C KKEEA+GLVL GDL NPP+HEFAYEGL+IRPA PY T Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI DV RQR L+++ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC + V+ LYVDEAFACHSGTLLALIALVRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+GKMRTTN N PI +DTTGS+KP GD+VLTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIK L N P+G+F AT++EW EH IM + D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LV +LETAGI++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS V Sbjct 1015 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 S+ Y +NHWDNRPGG+M+GFN E A ++PF +G N+ Q+ V R+++ F+ N Sbjct 1074 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 I+P+NRRLPH+LV ++ +GER+EWL+ KI GH +LLVS YNLV+P KRV W+AP + Sbjct 1134 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 1193 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1194 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 1253 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLL+RAYGYADR SE VV L RKF + R L+P CVTSNTE+F LFSNFDNGRR T H Sbjct 1254 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 1313 Query 781 MNNQLNAAFVGQATR-AGC 798 N +L++ + AGC Sbjct 1314 ANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1331 Score:1190 bits(3079), Expect:0.0, Method:Compositional matrix adjust., Identities:554/799(69%), Positives:658/799(82%), Gaps:2/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR A+KVT Q D ++G YL+LSPQTVL+S+KL+ IH LAEQV THSGR+GRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 V+ YDGR+LVP+G AI +FQ+LSESATMVYNEREF+NRKLHHIAL+GPALNTDEE+Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E VRAER E EYV+DVD+R C K+E+A+GLVLVGDL NPP+HEFAYEGL+IRPA P++T Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 VIGVFGVPGSGKSAIIK++VT +DLV SGKKENCQEI DV +QR L+++ARTVDS+LLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC R V+ LYVDEAFACHSGTLLALIA+V+P KV+LCGDPKQCGFFN+MQ+KVN+NH+I Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV HKSISRRCTLP+TAIVS+LHY+GKMRTTN + PI +DTTG+TKP GD+VLTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 R WVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYA +SEHVNVLLTRTE + Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLSGDPWIK L N PKG+F AT++EW+ EH +IM + D FQNKA VCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K LV +LETAGI++ +W ++ AF+EDRAYSPEVALNEICT+ YGVDLDSGLFS V Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVL-AFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSV 1072 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 S++Y +NHWDNRPGG+M+GFN E A E++YPF +GK ++ Q+ V R+++ FN N Sbjct 1073 SLYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECN 1132 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 I+ NRRLPH+LV ++ +GER+EWL+ K+ G+H+LLVS YNL LP KRV W+AP + Sbjct 1133 ILLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAPPHVS 1192 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GAD Y+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+MKLQMLGGDSL LL PGG Sbjct 1193 GADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGG 1252 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SLLIRAYGYADR SE VV L RKF + R L+P CVTSNTE+F LF+NFDNGRR T H Sbjct 1253 SLLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLHQ 1312 Query 781 MNNQLNAAFVGQATR-AGC 798 N +L++ F AGC Sbjct 1313 ANQRLSSMFACNGLHTAGC 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1330 Score:1086 bits(2809), Expect:0.0, Method:Compositional matrix adjust., Identities:510/797(64%), Positives:616/797(77%), Gaps:0/797(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G++ETPR +IKV+ Q D ++G YL+LSPQ VLRS+KL+ IH LAEQVK THSGR+GRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AV+ Y GR+LVP+G AI + FQ+LSESAT+VYNEREFVNRKL HIA++G ALNTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 E V ER E +YV+DVDQ+ C KKE+A+G VL G+L NPP+HEFAYEGLR RP+ PYK Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 +GV+GVPGSGKSAIIKN VT DLV SGKKENC EI DV++ R L I+A+TVDS+LLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G ++LY+DEAF+CH+GTLLA IA+VRP+QKVVLCGDPKQCGFFNMMQ+KVNYNH+I Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 C++V+HKSISRRCT +TAIVS LHY+ +MRTTN I++DTTG+TKP DL+LTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQ DYRG+EVMTAAASQGLTR VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 LVWKTLS DPWIKTL NPP+G++ ATI EWE EH IM I + +TF NK NVCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+L P+LETAGI L+ WS+++ F +D AYSPEVALN ICT+MYG DLD+GLFS+P V Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + Y +HWDNR GGKM+GF+ +A L R++P+ +G+ + QI VT RI+ + N Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEMRIQRPRSDAN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 IIP NRRLPHSLVA H + R E G+ +LLVS YN+ LP K++TW+AP+G + Sbjct 1134 IIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIGTQ 1193 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 GA +T NL LG+P LG +D V++N+ TPFR HHYQQC DHAMKLQML GD+LR +KPGG Sbjct 1194 GAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGG 1253 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 SL ++AYGYADR SE VV L RKF+S R +P CVTSNTE+F FS FDNG+R H Sbjct 1254 SLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNGKRAIALHS 1313 Query 781 MNNQLNAAFVGQATRAG 797 N + N+ F AG Sbjct 1314 ANRKANSIFQNTFLPAG 1330 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 541 to 1344 Score:979 bits(2532), Expect:0.0, Method:Compositional matrix adjust., Identities:473/810(58%), Positives:601/810(74%), Gaps:19/810(2%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 ++ETPRG +++ Q D ++G+Y+V+SP +VL++ KL+ H LA+QVK THSGRAGRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRY 600 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE YD ++L+P+G A+ +F +LSESAT+VYNEREFVNRKL+HIA+HGPA NT+EE Y Sbjct 601 AVEPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ++ +AE E EYV+DVD++RC KKEEA+GLVL G+LTNPPYHE A EGL+ RPA PYK Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 298 GC++ V+VLYVDEAFACH+G LLALIA+VRPR+KVVLCGDPKQCGFFNMMQ+KV++NH Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPE 840 Query 299 -NICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 357 +ICT+ ++K ISRRCT PVTAIVS+LHY+GKM+TTN K I +D TG+TKP PGD++L Sbjct 841 RDICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 417 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNEN LYA TSEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRT 960 Query 418 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANV 477 E +LVWKTL GDPWIK L N PKGNF+ATI++WE EH I+A I + + F K NV Sbjct 961 EDRLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNV 1020 Query 478 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 537 CWAK+L PIL TAGI L QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 538 PLVSVHY--ADN-----HWDNRPGGKMFGFNPEAASILERKYPFTK--GKWNTNKQICVT 588 + + Y AD+ HWDN PG + +G++ A+ L R++P + GK Q+ + Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFPVFQLAGK---GTQLDLQ 1137 Query 589 TRRIEDFNPNTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPT 648 T R + N++P NR LPH+LV EH+ + +E +N+ H VL+VS + P Sbjct 1138 TGRTRVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPH 1197 Query 649 KRVTWVAPLGIRGADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQML 708 KR+ W+AP+GI GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1198 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 1256 Query 709 GGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSN 768 +L L PGG+L++++YGYADR SE VV L RKF A +P CV+SNTEM+ +F Sbjct 1257 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQ 1316 Query 769 FDNGR-RNFTTHVMNNQLNAAFVGQATRAG 797 DN R R FT H +N +++ + G TR G Sbjct 1317 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 1344 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 541 to 1344 Score:971 bits(2511), Expect:0.0, Method:Compositional matrix adjust., Identities:469/810(58%), Positives:600/810(74%), Gaps:19/810(2%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 ++ETPRG +++ Q D ++G+Y+V+SP +VL++ KL+ H LA+QVK THSGR+GRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 600 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE YD ++L+P+G A+ +F +LSESAT+VYNEREFVNRKL+HIA+HGPA NT+EE Y Sbjct 601 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ++ +AE E EYV+DVD++RC KKEEA+GLVL G+LTNPPYHE A EGL+ RPA PYK Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 298 GC++ V+VLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 840 Query 299 -NICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 357 +ICT+ ++K ISRRCT PVTAIVS+LHY+GKM+TTN K I +D TG+TKP PGD++L Sbjct 841 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 417 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 960 Query 418 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANV 477 E +LVWKTL GDPWIK N PKGNF+ATI++WE EH I+A I + + F K NV Sbjct 961 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 1020 Query 478 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 537 CWAK+L PIL TAGI L QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 538 PLVSVHY--ADN-----HWDNRPGGKMFGFNPEAASILERKYPFTK--GKWNTNKQICVT 588 + + Y AD+ HWDN PG + +G++ A+ L R++P + GK Q+ + Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 1137 Query 589 TRRIEDFNPNTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPT 648 T R + N++P NR LPH+LV E++ + ++ +N+ H VL+VS + P Sbjct 1138 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 1197 Query 649 KRVTWVAPLGIRGADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQML 708 KR+ W+AP+GI GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1198 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 1256 Query 709 GGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSN 768 +L L PGG+L++++YGYADR SE VV L RKF A +P CV+SNTEM+ +F Sbjct 1257 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 1316 Query 769 FDNGR-RNFTTHVMNNQLNAAFVGQATRAG 797 DN R R FT H +N +++ + G TR G Sbjct 1317 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 1344 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1328 Score:942 bits(2434), Expect:0.0, Method:Compositional matrix adjust., Identities:460/800(58%), Positives:573/800(71%), Gaps:9/800(1%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPR IKVT P + ++G Y VLSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 VE Y GR++VPSG AI DFQ+LSESAT+V+NEREFVNR LHHIA++G ALNTDEE Y Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ++V++ T+ EYV+D+D ++C KK +A + LVG+L +PP+HEFAYE L+ RPA P+K Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G VD LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+VYHKSISRRCT VT+IVS+L Y+ +MRT N N I++DTT +TKP D++LTCF Sbjct 833 CTEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL GNF AT++EW+ EH +IMA I + D FQNK NVCWA Sbjct 953 IVWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWA 1012 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+L P+L TA I L QW + I AFK+D+AYSPE+ALN CTR +GVD+DSGLFS P V Sbjct 1013 KALEPVLATANITLTRSQW-ETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTV 1071 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + Y + HWDN PG M+G A L R+YP +T + V T I+D+NP N Sbjct 1072 PLTYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLIN 1131 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPHSLV HR LV K+ G VL+V G + +P KRV + P Sbjct 1132 VVPLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVV-GTPMNIPGKRVETLGPSP-- 1188 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 Y L+LG+PA LG+YD++ IN+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1189 QCTYKAELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGG 1248 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGR----RNF 776 + + YG ADR +E ++ + R FR SR +P C NTE+ F+F DNG ++ Sbjct 1249 TCIALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQDR 1308 Query 777 TTHVMNNQLNAAFVGQATRA 796 + V+NN + +A RA Sbjct 1309 LSVVLNNIYQGSTQHEAGRA 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1329 Score:938 bits(2425), Expect:0.0, Method:Compositional matrix adjust., Identities:451/801(56%), Positives:572/801(71%), Gaps:10/801(1%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE Y G+++VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTKP DL+LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+LVP+L+TAGI L QW+ + FKED+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1074 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPH+LV +H V+K+ G VL+V G + + K V W++ Sbjct 1134 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLS----E 1188 Query 661 GADYTY--NLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 718 D T+ L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L P Sbjct 1189 TPDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNP 1248 Query 719 GGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTT 778 GG+ + YGYADR SE ++ + R+F+ SR KP TE+ F+F FD R Sbjct 1249 GGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNP 1308 Query 779 HVMNNQLNAAFVG-QATRAGC 798 + +++ L + G + AGC Sbjct 1309 YKLSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1329 Score:936 bits(2419), Expect:0.0, Method:Compositional matrix adjust., Identities:448/799(56%), Positives:570/799(71%), Gaps:6/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VL+S+KLS IH LAEQV THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE Y G+++VP G+AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 + V+ + EY+YD+D+++C KKE GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV+HKSISRRCT VT++VS+L Y+ KMRTTN IV+DTTGSTKP DL+LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL GNF ATI+EW+ EH +IM I D FQNKANVCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+LVP+L+TAGI + QW+ + F+ D+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1015 KALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1074 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRIN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPH+LV H V+K+ G VL+V G L +P K V W++ Sbjct 1134 LVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVV-GEKLSVPGKMVDWLSDRP-- 1190 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 A + L+LG+P + +YD++ +N+ TP++ HHYQQC DHA+KL ML + L PGG Sbjct 1191 EATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 + + YGYADR SE ++ + R+F+ SR KP TE+ F+F +D R + Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYK 1310 Query 781 MNNQLNAAFVG-QATRAGC 798 +++ L + G + AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1329 Score:934 bits(2415), Expect:0.0, Method:Compositional matrix adjust., Identities:448/799(56%), Positives:570/799(71%), Gaps:6/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VL+S+KLS IH LAEQV THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE Y G+++VP G+AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 + V+ + EY+YD+D+++C KKE GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN IV+DTTGSTKP DL+LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIK L GNF ATI+EW+ EH +IM I D FQNKANVCWA Sbjct 955 IVWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+LVP+L+TAGI + QW+ + F+ D+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1015 KALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1074 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRIN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPH+LV H V+K+ G VL+V G L +P K+V W++ Sbjct 1134 LVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVV-GEKLSVPGKKVDWLSDQP-- 1190 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 A + L+LG+P + +YD+V IN+ TP++ HHYQQC DHA+KL ML + L PGG Sbjct 1191 EATFRARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 + + YGYADR SE ++ + R+F+ SR KP TE+ F+F +D R + Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYK 1310 Query 781 MNNQLNAAFVG-QATRAGC 798 +++ L + G + AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1329 Score:934 bits(2414), Expect:0.0, Method:Compositional matrix adjust., Identities:449/799(56%), Positives:569/799(71%), Gaps:6/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VL+S+KLS IH LAEQV THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE Y G+++VP G+AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 + V+ + EY+YD+D+++C KKE GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R + L+++ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN I +DTTGSTKP DL+LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+G+EVMTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 895 RGWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL GNF ATI+EW+ EH +IM I D FQNKANVCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+LVP+L+TAGI + QW+ + F+ D+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1015 KALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1074 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPH+LV H V+K+ G VL+V G L +P K V W++ Sbjct 1134 LVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVV-GEKLSVPGKTVDWLSDRP-- 1190 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 A + L+LG+P + +YD++ IN+ TP++ HHYQQC DHA+KL ML + L PGG Sbjct 1191 EATFRARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 + + YGYADR SE ++ + R+F+ SR KP TE+ F+F +D R + Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYK 1310 Query 781 MNNQLNAAFVG-QATRAGC 798 +++ L + G + AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 540 to 1336 Score:931 bits(2405), Expect:0.0, Method:Compositional matrix adjust., Identities:456/802(57%), Positives:573/802(71%), Gaps:18/802(2%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 ++ETPRG IK+ Q D +G Y V+SP VLR+Q+L IH LAEQVK TH GR GRY Sbjct 540 ALVETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRY 599 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 +VE YD ++L+P+G +S + F +LSESAT+VYNEREF+NRKLHHIA G A NT+EE Y Sbjct 600 SVEPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQY 659 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 ++ +A+ T+HEYVYDVD R+C K+E A GLVLVG+LTNPPYHE AYEGLR RPA PY Sbjct 660 KVCKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIE 719 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 +GV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV + R + I+ RTVDS+LLN Sbjct 720 TLGVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLN 779 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 298 G + VDVLYVDEAFACH+GTL+ALIA+V+PR+KVVLCGDPKQ FFN+MQ+KVN+N+ Sbjct 780 GWKKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPE 839 Query 299 -NICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 357 ++CT ++K ISRRCT PVTAIVS+LHY+GKMRTTN + I +D GSTKP GD+VL Sbjct 840 RDLCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVL 899 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 417 TCFRGWVKQ QIDY G AASQGLTR+GVYAVRQKVNENPLYA SEHVNVLLTRT Sbjct 900 TCFRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRT 959 Query 418 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANV 477 E ++VWKTL GDPWIK L N PKGNF AT++EW+ EH IM I + D F +K N Sbjct 960 EDRIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNT 1019 Query 478 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 537 CWAK+++PIL TAGI+L QW + F+ D+ YS AL+ ICT+M+G+DL SG+FS+ Sbjct 1020 CWAKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSR 1079 Query 538 PLV--SVHYAD-----NHWDNRPGGKMFGFNPEAASILERKYP--FTKGKWNTNKQICVT 588 P + + H AD HWDN PGG+ FG+N +A +KYP GK + QI Sbjct 1080 PEIPLTFHPADVGRVRAHWDNSPGGQKFGYN-KAVIPTCKKYPVYLRAGKGD---QILPI 1135 Query 589 TRRIEDFNPNTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPT 648 R+ + N++P NR LPHSL A + + + +N++ GH +LLVS + Sbjct 1136 YGRVSVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVS 1195 Query 649 KRVTWVAPLGIRGADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQML 708 KR+TWVAPLG+RGAD+ ++L G P L RYDLV++N+ P+R HHYQQC +HA ++ L Sbjct 1196 KRITWVAPLGVRGADHNHDLHFGFPP-LSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTL 1254 Query 709 GGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSN 768 +L LKPGG+L ++AYG+AD SE VV L RKF + A++P C NTEMFF+F Sbjct 1255 ARSALNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQ 1314 Query 769 FDNGR-RNFTTHVMNNQLNAAF 789 DN R R FT H +N ++ F Sbjct 1315 LDNDRERQFTQHHLNLAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1329 Score:929 bits(2402), Expect:0.0, Method:Compositional matrix adjust., Identities:448/799(56%), Positives:567/799(70%), Gaps:6/799(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 AVE Y G+++VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTK DL+LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+LVP+L+TAGI L QW+ + FKED+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPH+LV +H V+K+ G VL+V G + + K V W++ Sbjct 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSETP-- 1190 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 780 + + YGYADR SE ++ + R+F+ SR KP TE+ F+F FD R + Sbjct 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 Query 781 MNNQLNAAFVGQAT-RAGC 798 +++ L + G AGC Sbjct 1311 LSSTLTNIYTGSGLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1328 Score:929 bits(2400), Expect:0.0, Method:Compositional matrix adjust., Identities:451/802(56%), Positives:573/802(71%), Gaps:13/802(1%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPR IKVT P + ++G Y VLSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 VE Y GR++VPSG AI DFQ+LSESAT+VYNEREFVNR LHHIA++G ALNTDEE Y Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +++R+ E EYV+D+D ++C KK EA + LVGDL +PP+HEFAYE L+ RPA P+K Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++++ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G PVD LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT +TKP D++LTCF Sbjct 833 CTEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL G F AT++EW+ EH +IM + D +QNK +VCWA Sbjct 953 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWA 1012 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+L P+L TA I L QW + I AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P V Sbjct 1013 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 1071 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + Y + HWDN PG +G A L R+YP +T + V T I D+NP N Sbjct 1072 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMIN 1131 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPHSLV HR L++K+ G +L++ G + +P KRV + P Sbjct 1132 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVI-GTPINVPGKRVETLGP---- 1186 Query 661 GADYTY--NLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 718 G TY +L+LG+P+ +G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1187 GPQCTYKADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 1246 Query 719 GGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGR----R 774 GG+ + YG ADR +E ++ + R FR SR +P C NTE+ F+F DNG + Sbjct 1247 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQ 1306 Query 775 NFTTHVMNNQLNAAFVGQATRA 796 + + V+NN + +A RA Sbjct 1307 DQLSVVLNNIYQGSTQYEAGRA 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1328 Score:927 bits(2397), Expect:0.0, Method:Compositional matrix adjust., Identities:451/802(56%), Positives:575/802(71%), Gaps:13/802(1%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPR IKVT P + +G Y VLSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 VE Y GR++VPSG AI DFQ+LSESAT+VYNEREFVNR LHHIA++G A+NTDEE Y Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +++R+ + EYV+D+D R+C KK +A + LVG+L +PP+HEFAYE L+ RPA P+K Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G PVD LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT +TKP D++LTCF Sbjct 833 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL G F AT++EW+ EH +IM I + D +QNK +VCWA Sbjct 953 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 1012 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+L P+L TA I L QW + I AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P V Sbjct 1013 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 1071 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 + Y + HWDN PG +G A L R+YP +T + V T I+D++P N Sbjct 1072 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 1131 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPHSLV HR L++K+ G VL++ G + +P KRV + P Sbjct 1132 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 1186 Query 661 GADYTY--NLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 718 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1187 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 1246 Query 719 GGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGR----R 774 GG+ + YG ADR +E ++ + R FR SR +P C NTE+ F+F DNG + Sbjct 1247 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQ 1306 Query 775 NFTTHVMNNQLNAAFVGQATRA 796 + + V+NN + +A RA Sbjct 1307 DQLSIVLNNIYQGSTQYEAGRA 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1300 Score:914 bits(2363), Expect:0.0, Method:Compositional matrix adjust., Identities:437/772(57%), Positives:565/772(73%), Gaps:5/772(0%) Query 1 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 60 G +ETPRG I+VT+ P + +G Y +LSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 VE Y G+++VP G A+ +DFQ+LSESAT+V+NEREFVNR LHHIA++G ALNTDEE Y Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 + V+ + T+ EYV+D+D R+C K+E+A L L GDL +PP+HEFAYE L+ RPA P+K Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++++ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 832 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTG+TKP DL+LTCF Sbjct 833 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 480 +VWKTL+GDPWIKTL G+F A++ +W+ EH +IMA + + T D FQNK NVCWA Sbjct 953 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 1012 Query 481 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 540 K+L P+L TA I L +QW + + FK DRAYSPE+ALN CTR +GVDLDSGLFS P V Sbjct 1013 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 1071 Query 541 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 600 ++ Y D HWDN PG M+G N E A L R+YP +T + + I+D++P N Sbjct 1072 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 1131 Query 601 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 660 ++P NRRLPHSL+ +H+ ++K+ G VL++ G + +P K+V + PL Sbjct 1132 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 1190 Query 661 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 720 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1191 T--IRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 1248 Query 721 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNG 772 + + YG ADR +E ++ + R FR +R +P NTE+ F+F DNG Sbjct 1249 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 1300 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 566 to 1369 Score:645 bits(1664), Expect:0.0, Method:Compositional matrix adjust., Identities:359/806(45%), Positives:483/806(59%), Gaps:42/806(5%) Query 2 IIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLS-LIHALAEQVKTCTHSGRAGRY 60 II+ RG +KV D+++GEYLVLSP TVLR++KL+ L+ LAE+V H GR GRY Sbjct 566 IIDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRY 625 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 A+E + ++L+P+G ++ + FQ+L+ESAT+ YN+ F R L +A G A NTDE Y Sbjct 626 AIEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYY 685 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +LV A + EYVY++ ++C KKE+A G VL GD+ NPPYH+FAYE LR RPA + Sbjct 686 KLVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVH 745 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSL Sbjct 746 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYG 805 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 V+ LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YNH I Sbjct 806 AYRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEI 865 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 +V K+ISRRCT +TAIVS+L+YEG+M+TTN KP+++DTTGSTKPD LVLTCF Sbjct 866 SDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCF 925 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVK L+ Y +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 926 RGWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDE 985 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGI---CNHQVTFDTFQNKANV 477 LVWKTL DP I L PPKG++ AT+++WE EH I+A + C ++ F K N Sbjct 986 LVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNF--AHGKRNT 1043 Query 478 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 537 CWA + +L AG+++ +++I AF+ED+ +S AL+ + T ++G+D SG+ S Sbjct 1044 CWAVTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSG 1103 Query 538 PLVSVHYADNHWDNRPGGKMFGFNPEAASILERKYP-FTKGKWNTNKQIC--VTTRRIED 594 + ++HW N G +G N +A E P K + C + T ++ Sbjct 1104 KGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVP 1163 Query 595 FNPNTNIIPANRRLPHSLVAEHRPVKGERME--WLVNKINGHHVLLV-SGYNLVLPTKRV 651 +P +P NR +PH LV K +E V++ + H + TKRV Sbjct 1164 LDPARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRV 1223 Query 652 TW-------VAPLGI----------------------RGADYTYNLELGLPATLGRYDLV 682 ++ AP G+ RGA G LG +DLV Sbjct 1224 SYNSVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLNNLGIFDLV 1283 Query 683 IINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLG 742 + P R HHY QC DHA+ + GG +++AYG ADR +ER V Sbjct 1284 FCDAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTA 1343 Query 743 RKFRSSRALKP-PCVTSNTEMFFLFS 767 R FRS KP +N E+FF FS Sbjct 1344 RYFRSVSVEKPVSSRITNVEVFFKFS 1369 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 565 to 1368 Score:637 bits(1643), Expect:0.0, Method:Compositional matrix adjust., Identities:358/806(44%), Positives:484/806(60%), Gaps:42/806(5%) Query 2 IIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLS-LIHALAEQVKTCTHSGRAGRY 60 II+ RG +KV D+ +GEYLVLSP TVLR++KL+ L+ LAE+V H GR GRY Sbjct 565 IIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRY 624 Query 61 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 120 A+E + ++L+P+G ++ FQ+L+ESAT+ YN+ F R L +A G A NTDE Y Sbjct 625 AIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYY 684 Query 121 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 180 +LV A + + EYVY++ ++C KKE+A G VL GD+ NPPYH+FA+E LR RPA + Sbjct 685 KLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVH 744 Query 181 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 240 IG++GVPG+GK+AII VT +DLV SGKKENC++I V+ +R L+I+ARTVDSLL Sbjct 745 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYG 804 Query 241 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 300 VD LYVDEA+ACHSGTLLALIA VRP KVVLCGDPKQ G N +QM+++YNH I Sbjct 805 AYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEI 864 Query 301 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 360 +V K+ISRRCT +TAIVS+L+YEG+M+TTN KP+++DTTGSTKPD LVLTCF Sbjct 865 SDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCF 924 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 420 RGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 925 RGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDE 984 Query 421 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGI---CNHQVTFDTFQNKANV 477 LVWKTL DP I L PPKG++ AT+++WE EH I+A + C ++ F K N Sbjct 985 LVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNF--AHGKRNT 1042 Query 478 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 537 CWA + +L AG+ + +++I AF+ED+ +S AL+ + ++G+D SG+ S Sbjct 1043 CWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSG 1102 Query 538 PLVSVHYADNHWDNRPGGKMFGFNPEAASILERKYP-FTKGKWNTNKQIC--VTTRRIED 594 + ++HW N G +G N +A E P K + C + T ++ Sbjct 1103 KGSFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVP 1162 Query 595 FNPNTNIIPANRRLPHSLVAEHRPVKGERME--WLVNKINGHHVLLV-SGYNLVLPTKRV 651 +P +P NR +PH LV K +E V++ + H + TKRV Sbjct 1163 MDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRV 1222 Query 652 TWVAPLGI---RGADYTYNLELGLPAT--------------------------LGRYDLV 682 ++ + L + RG Y ++ G T LG +DLV Sbjct 1223 SYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDLV 1282 Query 683 IINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLG 742 + P R HHY QC DHA + + GG +++AYG ADR +ER V Sbjct 1283 FCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTA 1342 Query 743 RKFRSSRALKP-PCVTSNTEMFFLFS 767 R F+S KP +N E+FF FS Sbjct 1343 RYFKSVSVEKPVSSRITNVEVFFKFS 1368 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 816 to 1111 Score:79.7 bits(195), Expect:6e-14, Method:Compositional matrix adjust., Identities:86/308(28%), Positives:140/308(45%), Gaps:34/308(11%) Query 176 PYKTAVIGVFGVPGSGKSA-IIKNLVTRQDLVTSGKKENCQEISTDVMRQ---RNLEISA 231 P V V GVPG GK+ I++ + +DL+ KE C+ I + R + + Sbjct 816 PSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATKDNV 875 Query 232 RTVDSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQ 291 RTVDS L++ + + L++DE H+G + LIAL R+ +V GD +Q F N + Sbjct 876 RTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVF-GDTEQIPFINRVA 934 Query 292 MKVNYNHNICTQVY-HKSISR---RCTLPVTAIVSSLHYEGKMRTTNEYNKPI---VVDT 344 Y + T VY H+ + R RC VT ++S Y+GK+ TN+ + + VV Sbjct 935 -NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS-KYDGKVLCTNDVIRSVDAEVVRG 992 Query 345 TG----STKPDPGDLVLTCFRGWVKQLQIDYRGH-------EVMTAAASQGLTRKGVYAV 393 G +KP G ++ + ++ RG+ E+ T QG T + V V Sbjct 993 KGVFNPKSKPLKGKIITFT---QSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVV 1049 Query 394 RQKVNENPLYASTSEHVNVLLTRTEGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVE 453 R L + +S HV V LTR + ++ DP +K + K + ++ ++ Sbjct 1050 RLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSK------VSDFILD 1103 Query 454 HASIMAGI 461 + AGI Sbjct 1104 MYKVDAGI 1111 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 821 to 1111 Score:79.0 bits(193), Expect:1e-13, Method:Compositional matrix adjust., Identities:83/302(27%), Positives:137/302(45%), Gaps:32/302(10%) Query 181 VIGVFGVPGSGKSA-IIKNLVTRQDLVTSGKKENCQEISTDVMRQ---RNLEISARTVDS 236 V V GVPG GK+ I++ + +DL+ KE C+ I + R + RTVDS Sbjct 821 VTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDS 880 Query 237 LLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNY 296 L++ + + L++DE H+G + L+AL R+ +V GD +Q F N + Sbjct 881 FLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVF-GDAEQIPFINRVANFPYP 939 Query 297 NHNICTQVYHKSISR---RCTLPVTAIVSSLHYEGKMRTTNEYNKPI---VVDTTG---- 346 H T +YH+ + R RC VT ++S Y+GK+ TN+ + + VV G Sbjct 940 KHFRYTCLYHREVRRLSLRCPADVTHFMNS-KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998 Query 347 STKPDPGDLVLTCFRGWVKQLQIDYRGH-------EVMTAAASQGLTRKGVYAVRQKVNE 399 +KP G ++ + ++ RG+ E+ T QG T + V VR Sbjct 999 KSKPLKGKIITFT---QSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTP 1055 Query 400 NPLYASTSEHVNVLLTRTEGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMA 459 L + +S HV V LTR + ++ DP +K + K + ++ ++ + A Sbjct 1056 LELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSK------VSDFILDMYKVDA 1109 Query 460 GI 461 GI Sbjct 1110 GI 1111 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 861 to 1117 Score:67.0 bits(162), Expect:6e-10, Method:Compositional matrix adjust., Identities:78/270(29%), Positives:119/270(44%), Gaps:37/270(13%) Query 184 VFGVPGSGKSA-IIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEI---------SART 233 V GVPG GK+A II + + DLV + +E + ++R+R + + RT Sbjct 861 VDGVPGCGKTAEIIARVNWKTDLVLTPGRE-----AAAMIRRRACALHKSPVATNDNVRT 915 Query 234 VDSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMK 293 DS ++N D +YVDE H+G LL + +K + GD KQ F N + M Sbjct 916 FDSFVMNRKIFKFDAVYVDEGLMVHTG-LLNFALKISGCKKAFVFGDAKQIPFINRV-MN 973 Query 294 VNYNHN----ICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTN---EYNKPIVVDTTG 346 +Y I V + ++ RC VT+ ++++ Y+ + TT+ K I V G Sbjct 974 FDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTI-YKAAVATTSPVVHSVKAIKVSGAG 1032 Query 347 STKPDPGDLVLTCFRGWV-------KQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNE 399 +P+ LT +G + KQ I ++V T QG T + VR Sbjct 1033 ILRPE-----LTKIKGKIITFTQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTP 1087 Query 400 NPLYASTSEHVNVLLTRTEGKLVWKTLSGD 429 L A S HV V LTR +V+ T+ D Sbjct 1088 IGLIARDSPHVLVALTRHTKAMVYYTVVFD 1117 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 826 to 1090 Score:59.3 bits(142), Expect:1e-07, Method:Compositional matrix adjust., Identities:72/272(26%), Positives:117/272(43%), Gaps:24/272(8%) Query 181 VIGVFGVPGSGK-SAIIKNLVTRQDLVTSGKKENCQEI-----STDVMRQRNLEISARTV 234 ++ V GVPG GK + +DL+ K+ I S+ ++R + RTV Sbjct 826 MVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLIRATMDNV--RTV 883 Query 235 DSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKV 294 DSLL++ R L++DE H+G + L+ L+ + GD +Q F N +Q Sbjct 884 DSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLV-LISGCDIAYIYGDTQQIPFINRVQNFP 942 Query 295 NYNHNICTQVYHKSISR---RCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGS---- 347 H QV + R RC V + S YEG + TT+ + + + G Sbjct 943 YPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS-KYEGAVTTTSTVQRSVSSEMIGGKGVL 1001 Query 348 ---TKPDPGDLVLTCFRGWVKQLQIDYRGHE-VMTAAASQGLTRKGVYAVRQKVNENPLY 403 +KP G +V + +++ +G++ V T QG T + V VR L Sbjct 1002 NSVSKPLKGKIVTFT---QADKFELEEKGYKNVNTVHEIQGETFEDVSLVRLTATPLTLI 1058 Query 404 ASTSEHVNVLLTRTEGKLVWKTLSGDPWIKTL 435 + +S HV V LTR + T+ DP ++ + Sbjct 1059 SKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 822 to 1095 Score:56.2 bits(134), Expect:1e-06, Method:Compositional matrix adjust., Identities:78/280(28%), Positives:117/280(41%), Gaps:23/280(8%) Query 181 VIGVFGVPGSGKSA-IIKNLVTRQDLVTSGKKENCQEI-----STDVMRQRNLEISARTV 234 VI V GVPG GK+ II+ + +DL+ KE + I V+R + RTV Sbjct 822 VILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRADKDNV--RTV 879 Query 235 DSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKV 294 DS L++ R L++DE H+G + L+ L + V GD KQ F + Sbjct 880 DSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVY-GDTKQIPFICRVA-NF 937 Query 295 NYNHNICTQVYHKSISRRCTLPVTAIVSSL---HYEGKMRTTNEYNKPI---VVDTTGS- 347 Y + V + RR TL A V+ Y+G + T+ + + VV G+ Sbjct 938 PYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAEVVRGKGAL 997 Query 348 ---TKPDPGDLVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYA 404 T P G ++ + L+ Y+ +V T QG T + VR + + Sbjct 998 NPITLPLEGKILTFTQADKFELLEKGYK--DVNTVHEVQGETYEKTAIVRLTSTPLEIIS 1055 Query 405 STSEHVNVLLTRTEGKLVWKTLSGDPWIKTLQNPPK-GNF 443 S S HV V LTR + T+ DP + + K NF Sbjct 1056 SASPHVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNF 1095 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:51.2 bits(121), Expect:4e-05, Method:Compositional matrix adjust., Identities:67/279(24%), Positives:112/279(40%), Gaps:47/279(16%) Query 188 PGSGKSAIIKNLVTR-----QDLVTSGKKENCQEISTDVMR----QRNLEISAR----TV 234 PG GK+ + + L+ + K + +EI V R + + + R T+ Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 235 DSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKV 294 DS L+N VLY+DE F H+G +A I + +L GD +Q + ++ Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTKC-DSAILFGDSRQIRYGRCSELDT 2369 Query 295 NYNHNICTQVYHKS-----ISRRCTLPVTAIVSSLHYEGKMRTTN--------------- 334 ++ V +S +S RC V A +S+ Y + TTN Sbjct 2370 AVLSDLNRFVDDESRVYGEVSYRCPWDVCAWLSTF-YPKTVATTNLVSAGQSSMQVREIE 2428 Query 335 -----EYNKPIVVDTTGSTKPDPGDLVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKG 389 EY+ V T + + DL+ + + K+ + V+T +QG T + Sbjct 2429 SVDDVEYSSEFVYLTM--LQSEKKDLL----KSFGKRSRSSVEKPTVLTVHEAQGETYRK 2482 Query 390 VYAVRQKVNENPLYASTSEHVNVLLTRTEGKLVWKTLSG 428 V VR K E+ + S + H+ V L+R L + LS Sbjct 2483 VNLVRTKFQEDDPFRSEN-HITVALSRHVESLTYSVLSS 2520 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 812 to 1091 Score:50.8 bits(120), Expect:5e-05, Method:Compositional matrix adjust., Identities:75/282(27%), Positives:116/282(41%), Gaps:16/282(5%) Query 176 PYKTA-VIGVFGVPGSGKSA-IIKNLVTRQDLVTSGKKENCQEI---STDVMRQRNLEIS 230 P TA ++ V GVPG GK+ I++ + +DLV KE + I + R + + Sbjct 812 PEPTAKLVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDN 871 Query 231 ARTVDSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMM 290 RTVDS L++ R L++DE H+G + L+ L V D +Q F + Sbjct 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYV-DTQQIPFICRV 930 Query 291 QMKVNYNHNICTQVYHKSISRRCTLPVTAIVSSL---HYEGKMRTTNEYNKPI---VVDT 344 Y + V + RR TL A V+ Y+G + T+ + + VV Sbjct 931 A-NFPYPAHFAKLVVDEKEDRRVTLRCPADVTYFLNQKYDGSVLCTSSVERSVSAEVVRG 989 Query 345 TGSTKPD--PGDLVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 G+ P P + + F K +D +V T QG T + VR + Sbjct 990 KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049 Query 403 YASTSEHVNVLLTRTEGKLVWKTLSGDPWIKTLQNPPK-GNF 443 + S HV V LTR + + T+ DP + + K NF Sbjct 1050 ISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNF 1091