******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= housekeeping.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ NIGNEABH_00002 1.0000 100 NIGNEABH_00030 1.0000 100 NIGNEABH_00036 1.0000 100 NIGNEABH_00045 1.0000 100 NIGNEABH_00049 1.0000 100 NIGNEABH_00050 1.0000 100 NIGNEABH_00054 1.0000 100 NIGNEABH_00059 1.0000 100 NIGNEABH_00060 1.0000 100 NIGNEABH_00062 1.0000 100 NIGNEABH_00063 1.0000 100 NIGNEABH_00076 1.0000 100 NIGNEABH_00087 1.0000 100 NIGNEABH_00092 1.0000 100 NIGNEABH_00113 1.0000 100 NIGNEABH_00117 1.0000 100 NIGNEABH_00130 1.0000 100 NIGNEABH_00133 1.0000 100 NIGNEABH_00148 1.0000 100 NIGNEABH_00157 1.0000 100 NIGNEABH_00173 1.0000 100 NIGNEABH_00180 1.0000 100 NIGNEABH_00197 1.0000 100 NIGNEABH_00214 1.0000 100 NIGNEABH_00248 1.0000 100 NIGNEABH_00251 1.0000 100 NIGNEABH_00258 1.0000 100 NIGNEABH_00292 1.0000 100 NIGNEABH_00294 1.0000 100 NIGNEABH_00322 1.0000 100 NIGNEABH_00349 1.0000 100 NIGNEABH_00351 1.0000 100 NIGNEABH_00399 1.0000 100 NIGNEABH_00468 1.0000 100 NIGNEABH_00489 1.0000 100 NIGNEABH_00497 1.0000 100 NIGNEABH_00499 1.0000 100 NIGNEABH_00510 1.0000 100 NIGNEABH_00520 1.0000 100 NIGNEABH_00619 1.0000 100 NIGNEABH_00671 1.0000 100 NIGNEABH_00674 1.0000 100 NIGNEABH_00680 1.0000 100 NIGNEABH_00681 1.0000 100 NIGNEABH_00682 1.0000 100 NIGNEABH_00691 1.0000 100 NIGNEABH_00692 1.0000 100 NIGNEABH_00693 1.0000 100 NIGNEABH_00694 1.0000 100 NIGNEABH_00698 1.0000 100 NIGNEABH_00701 1.0000 100 NIGNEABH_00708 1.0000 100 NIGNEABH_00709 1.0000 100 NIGNEABH_00713 1.0000 100 NIGNEABH_00716 1.0000 100 NIGNEABH_00724 1.0000 100 NIGNEABH_00725 1.0000 100 NIGNEABH_00726 1.0000 100 NIGNEABH_00727 1.0000 100 NIGNEABH_00733 1.0000 100 NIGNEABH_00742 1.0000 100 NIGNEABH_00743 1.0000 100 NIGNEABH_00744 1.0000 100 NIGNEABH_00745 1.0000 100 NIGNEABH_00746 1.0000 100 NIGNEABH_00747 1.0000 100 NIGNEABH_00748 1.0000 100 NIGNEABH_00749 1.0000 100 NIGNEABH_00750 1.0000 100 NIGNEABH_00751 1.0000 100 NIGNEABH_00752 1.0000 100 NIGNEABH_00756 1.0000 100 NIGNEABH_00757 1.0000 100 NIGNEABH_00758 1.0000 100 NIGNEABH_00759 1.0000 100 NIGNEABH_00760 1.0000 100 NIGNEABH_00761 1.0000 100 NIGNEABH_00762 1.0000 100 NIGNEABH_00763 1.0000 100 NIGNEABH_00764 1.0000 100 NIGNEABH_00765 1.0000 100 NIGNEABH_00772 1.0000 100 NIGNEABH_00777 1.0000 100 NIGNEABH_00778 1.0000 100 NIGNEABH_00779 1.0000 100 NIGNEABH_00812 1.0000 100 NIGNEABH_00839 1.0000 100 NIGNEABH_00849 1.0000 100 NIGNEABH_00870 1.0000 100 NIGNEABH_00875 1.0000 100 NIGNEABH_00931 1.0000 100 NIGNEABH_01050 1.0000 100 NIGNEABH_01071 1.0000 100 NIGNEABH_01076 1.0000 100 NIGNEABH_01077 1.0000 100 NIGNEABH_01105 1.0000 100 NIGNEABH_01110 1.0000 100 NIGNEABH_01144 1.0000 100 NIGNEABH_01176 1.0000 100 NIGNEABH_01195 1.0000 100 NIGNEABH_01220 1.0000 100 NIGNEABH_01238 1.0000 100 NIGNEABH_01248 1.0000 100 NIGNEABH_01261 1.0000 100 NIGNEABH_01292 1.0000 100 NIGNEABH_01294 1.0000 100 NIGNEABH_01319 1.0000 100 NIGNEABH_01328 1.0000 100 NIGNEABH_01340 1.0000 100 NIGNEABH_01360 1.0000 100 NIGNEABH_01373 1.0000 100 NIGNEABH_01374 1.0000 100 NIGNEABH_01377 1.0000 100 NIGNEABH_01380 1.0000 100 NIGNEABH_01381 1.0000 100 NIGNEABH_01382 1.0000 100 NIGNEABH_01383 1.0000 100 NIGNEABH_01384 1.0000 100 NIGNEABH_01385 1.0000 100 NIGNEABH_01386 1.0000 100 NIGNEABH_01387 1.0000 100 NIGNEABH_01470 1.0000 100 NIGNEABH_01484 1.0000 100 NIGNEABH_01543 1.0000 100 NIGNEABH_01558 1.0000 100 NIGNEABH_01590 1.0000 100 NIGNEABH_01621 1.0000 100 NIGNEABH_01624 1.0000 100 NIGNEABH_01634 1.0000 100 NIGNEABH_01644 1.0000 100 NIGNEABH_01648 1.0000 100 NIGNEABH_01665 1.0000 100 NIGNEABH_01717 1.0000 100 NIGNEABH_01718 1.0000 100 NIGNEABH_01731 1.0000 100 NIGNEABH_01732 1.0000 100 NIGNEABH_01733 1.0000 100 NIGNEABH_01775 1.0000 100 NIGNEABH_01803 1.0000 100 NIGNEABH_01812 1.0000 100 NIGNEABH_01820 1.0000 100 NIGNEABH_01872 1.0000 100 NIGNEABH_01926 1.0000 100 NIGNEABH_01944 1.0000 100 NIGNEABH_02031 1.0000 100 NIGNEABH_02032 1.0000 100 NIGNEABH_02033 1.0000 100 NIGNEABH_02063 1.0000 100 NIGNEABH_02068 1.0000 100 NIGNEABH_02094 1.0000 100 NIGNEABH_02106 1.0000 100 NIGNEABH_02122 1.0000 100 NIGNEABH_02134 1.0000 100 NIGNEABH_02147 1.0000 100 NIGNEABH_02168 1.0000 100 NIGNEABH_02169 1.0000 100 NIGNEABH_02170 1.0000 100 NIGNEABH_02171 1.0000 100 NIGNEABH_02182 1.0000 100 NIGNEABH_02208 1.0000 100 NIGNEABH_02209 1.0000 100 NIGNEABH_02247 1.0000 100 NIGNEABH_02311 1.0000 100 NIGNEABH_02374 1.0000 100 NIGNEABH_02380 1.0000 100 NIGNEABH_02405 1.0000 100 NIGNEABH_02453 1.0000 100 NIGNEABH_02456 1.0000 100 NIGNEABH_02490 1.0000 100 NIGNEABH_02506 1.0000 100 NIGNEABH_02507 1.0000 100 NIGNEABH_02511 1.0000 100 NIGNEABH_02512 1.0000 100 NIGNEABH_02515 1.0000 100 NIGNEABH_02544 1.0000 100 NIGNEABH_02545 1.0000 100 NIGNEABH_02575 1.0000 100 NIGNEABH_02576 1.0000 100 NIGNEABH_02639 1.0000 100 NIGNEABH_02662 1.0000 100 NIGNEABH_02669 1.0000 100 NIGNEABH_02670 1.0000 100 NIGNEABH_02681 1.0000 100 NIGNEABH_02728 1.0000 100 NIGNEABH_02757 1.0000 100 NIGNEABH_02760 1.0000 100 NIGNEABH_02779 1.0000 100 NIGNEABH_02781 1.0000 100 NIGNEABH_02843 1.0000 100 NIGNEABH_02844 1.0000 100 NIGNEABH_02845 1.0000 100 NIGNEABH_02851 1.0000 100 NIGNEABH_02852 1.0000 100 NIGNEABH_02859 1.0000 100 NIGNEABH_02861 1.0000 100 NIGNEABH_02884 1.0000 100 NIGNEABH_02896 1.0000 100 NIGNEABH_02917 1.0000 100 NIGNEABH_02923 1.0000 100 NIGNEABH_02926 1.0000 100 NIGNEABH_02979 1.0000 100 NIGNEABH_02980 1.0000 100 NIGNEABH_03007 1.0000 100 NIGNEABH_03028 1.0000 100 NIGNEABH_03030 1.0000 100 NIGNEABH_03031 1.0000 100 NIGNEABH_03046 1.0000 100 NIGNEABH_03051 1.0000 100 NIGNEABH_03054 1.0000 100 NIGNEABH_03071 1.0000 100 NIGNEABH_03119 1.0000 100 NIGNEABH_03133 1.0000 100 NIGNEABH_03201 1.0000 100 NIGNEABH_03206 1.0000 100 NIGNEABH_03207 1.0000 100 NIGNEABH_03209 1.0000 100 NIGNEABH_03211 1.0000 100 NIGNEABH_03232 1.0000 100 NIGNEABH_03248 1.0000 100 NIGNEABH_03279 1.0000 100 NIGNEABH_03316 1.0000 100 NIGNEABH_03323 1.0000 100 NIGNEABH_03329 1.0000 100 NIGNEABH_03339 1.0000 100 NIGNEABH_03373 1.0000 100 NIGNEABH_03392 1.0000 100 NIGNEABH_03419 1.0000 100 NIGNEABH_03435 1.0000 100 NIGNEABH_03438 1.0000 100 NIGNEABH_03457 1.0000 100 NIGNEABH_03462 1.0000 100 NIGNEABH_03466 1.0000 100 NIGNEABH_03469 1.0000 100 NIGNEABH_03502 1.0000 100 NIGNEABH_03509 1.0000 100 NIGNEABH_03546 1.0000 100 NIGNEABH_03570 1.0000 100 NIGNEABH_03573 1.0000 100 NIGNEABH_03586 1.0000 100 NIGNEABH_03595 1.0000 100 NIGNEABH_03627 1.0000 100 NIGNEABH_03628 1.0000 100 NIGNEABH_03641 1.0000 100 NIGNEABH_03642 1.0000 100 NIGNEABH_03643 1.0000 100 NIGNEABH_03644 1.0000 100 NIGNEABH_03645 1.0000 100 NIGNEABH_03646 1.0000 100 NIGNEABH_03667 1.0000 100 NIGNEABH_03671 1.0000 100 NIGNEABH_03742 1.0000 100 NIGNEABH_03759 1.0000 100 NIGNEABH_03760 1.0000 100 NIGNEABH_03768 1.0000 100 NIGNEABH_03784 1.0000 100 NIGNEABH_03826 1.0000 100 NIGNEABH_03859 1.0000 100 NIGNEABH_03896 1.0000 100 NIGNEABH_03906 1.0000 100 NIGNEABH_03907 1.0000 100 NIGNEABH_03932 1.0000 100 NIGNEABH_03982 1.0000 100 NIGNEABH_04025 1.0000 100 NIGNEABH_04028 1.0000 100 NIGNEABH_04036 1.0000 100 NIGNEABH_04055 1.0000 100 NIGNEABH_04110 1.0000 100 NIGNEABH_04114 1.0000 100 NIGNEABH_04120 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme housekeeping.fasta -dna -mod zoops -nmotifs 3 -minw 6 -maxw 50 -maxsites 50 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 26900 N= 269 sample: seed= 0 hsfrac= 0 searchsize= 26900 norand= no csites= 1000 Letter frequencies in dataset: A 0.201 C 0.304 G 0.304 T 0.191 Background letter frequencies (from file dataset with add-one prior applied): A 0.201 C 0.304 G 0.304 T 0.191 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 width = 40 sites = 7 llr = 217 E-value = 2.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :43::711a:::4:6:::471::9::9:19:39:34:::: pos.-specific C 9:17::91:1:43:116361:a::1::1:1:3::6:363a probability G :661a3:7:3a33a:936::7:a:1a199:94:a:3647: matrix T 1::1:::::6:3::3:11:11::17:::::1:1:131::: bits 2.4 * 2.2 * 1.9 * 1.7 * * * * *** ** * ** * Relative 1.4 * * * * *** ** * ** * Entropy 1.2 * *** * * * * * *** ****** ** * (44.7 bits) 1.0 ** *** * * *** ** ********** ** ** 0.7 ** ******** *** ************* **** *** 0.5 *********** ******************* ******** 0.2 **************************************** 0.0 ---------------------------------------- Multilevel CGGCGACGATGCAGAGCGCAGCGATGAGGAGGAGCAGCGC consensus AA G G GC T GCA A AGCGC sequence TG C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------------------- NIGNEABH_00746 11 2.74e-22 CGGCCTAGCC CGGCGACGATGCAGAGCGAAGCGATGAGGAGGAGCAGGGC AATGCGGCCT NIGNEABH_01377 59 1.36e-21 TGACCCGCGC CAGCGACGATGCAGAGCGAAGCGATGAGGAGAAGCGGCGC CA NIGNEABH_01803 59 2.17e-18 TTTCGTGGAC CGGTGACGATGCAGAGCGCAGCGATGAGAAGGAGCGGCGC TT NIGNEABH_00760 4 6.85e-15 GCG CAGCGGCGAGGGGGCCGCAAGCGATGAGGAGGAGTAGCGC TCGATGACCG NIGNEABH_01385 7 3.85e-13 GGTGCC CGACGAACATGTCGAGGCCCTCGACGAGGATAAGCTCGCC AAGGAAGCCG NIGNEABH_00745 17 1.21e-12 ACGTGCTGCG TGCCGACGACGTGGTGTTCAGCGTTGAGGCGCTGAATGCC TATATCGCGG NIGNEABH_00762 32 3.05e-12 CCGATCCGTA CAAGGGCAAGGGCGTGCGCTACGAGGGCGAGCAGATCCGC CGCAAGGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- NIGNEABH_00746 2.7e-22 10_[+1]_50 NIGNEABH_01377 1.4e-21 58_[+1]_2 NIGNEABH_01803 2.2e-18 58_[+1]_2 NIGNEABH_00760 6.8e-15 3_[+1]_57 NIGNEABH_01385 3.8e-13 6_[+1]_54 NIGNEABH_00745 1.2e-12 16_[+1]_44 NIGNEABH_00762 3e-12 31_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC width=40 seqs=7 NIGNEABH_00746 ( 11) CGGCGACGATGCAGAGCGAAGCGATGAGGAGGAGCAGGGC 1 NIGNEABH_01377 ( 59) CAGCGACGATGCAGAGCGAAGCGATGAGGAGAAGCGGCGC 1 NIGNEABH_01803 ( 59) CGGTGACGATGCAGAGCGCAGCGATGAGAAGGAGCGGCGC 1 NIGNEABH_00760 ( 4) CAGCGGCGAGGGGGCCGCAAGCGATGAGGAGGAGTAGCGC 1 NIGNEABH_01385 ( 7) CGACGAACATGTCGAGGCCCTCGACGAGGATAAGCTCGCC 1 NIGNEABH_00745 ( 17) TGCCGACGACGTGGTGTTCAGCGTTGAGGCGCTGAATGCC 1 NIGNEABH_00762 ( 32) CAAGGGCAAGGGCGTGCGCTACGAGGGCGAGCAGATCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 40 n= 16409 bayes= 11.038 E= 2.5e-009 -945 149 -945 -41 109 -945 91 -945 50 -109 91 -945 -945 123 -109 -41 -945 -945 172 -945 183 -945 -9 -945 -49 149 -945 -945 -49 -109 123 -945 231 -945 -945 -945 -945 -109 -9 158 -945 -945 172 -945 -945 49 -9 58 109 -9 -9 -945 -945 -945 172 -945 150 -109 -945 58 -945 -109 149 -945 -945 91 -9 -41 -945 -9 91 -41 109 91 -945 -945 183 -109 -945 -41 -49 -945 123 -41 -945 172 -945 -945 -945 -945 172 -945 209 -945 -945 -41 -945 -109 -109 190 -945 -945 172 -945 209 -945 -109 -945 -945 -109 149 -945 -49 -945 149 -945 209 -109 -945 -945 -945 -945 149 -41 50 -9 49 -945 209 -945 -945 -41 -945 -945 172 -945 50 91 -945 -41 109 -945 -9 58 -945 -9 91 -41 -945 91 49 -945 -945 -9 123 -945 -945 172 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 40 nsites= 7 E= 2.5e-009 0.000000 0.857143 0.000000 0.142857 0.428571 0.000000 0.571429 0.000000 0.285714 0.142857 0.571429 0.000000 0.000000 0.714286 0.142857 0.142857 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.142857 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.285714 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.285714 0.285714 0.428571 0.285714 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.571429 0.142857 0.000000 0.285714 0.000000 0.142857 0.857143 0.000000 0.000000 0.571429 0.285714 0.142857 0.000000 0.285714 0.571429 0.142857 0.428571 0.571429 0.000000 0.000000 0.714286 0.142857 0.000000 0.142857 0.142857 0.000000 0.714286 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.142857 0.142857 0.714286 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.000000 0.857143 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.285714 0.285714 0.428571 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.285714 0.571429 0.000000 0.142857 0.428571 0.000000 0.285714 0.285714 0.000000 0.285714 0.571429 0.142857 0.000000 0.571429 0.428571 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRCGACGAKGBVGWGSSMAGCGATGAGGAGVAGMDSSGC MEME-1 regular expression -------------------------------------------------------------------------------- C[GA][GA]CG[AG]CGA[TG]G[CGT][ACG]G[AT]G[CG][GC][CA]AGCGATGAGGAG[GAC]AG[CA][AGT][GC][CG][GC]C -------------------------------------------------------------------------------- Time 29.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 width = 49 sites = 7 llr = 204 E-value = 6.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 141:37:76316a6341:6194::4471364114141636:17193:31 pos.-specific C 1:731:6:::4::1::31:3::4113:6::43:33:::4143:311:7: probability G ::::3:1:33:::13113:41:43:1:14::14::11:1164:1:49:: matrix T 761733331444:1444641:6164131341443647411:134:11:9 bits 2.4 * 2.2 * 1.9 * 1.7 * * * * Relative 1.4 * * * * ** * ** * * * * * * Entropy 1.2 ** * * * ** * ** * * ** * * * * (42.1 bits) 1.0 ** * * * ** * ** * * ** * * *** 0.7 **** * ****** ** ** ** ** * ** ****** * * * *** 0.5 **** *********** ** ***** * *** ****** ** * * *** 0.2 ******************* ********************* ******* 0.0 ------------------------------------------------- Multilevel TTCTAACAATCAAATATTAGATCTAAACGAATGATATACAGGATAGGCT consensus A CGTTTGATT ATCGTC AGGTCT ATCCTCCT TA CCTC A A sequence T G G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------------------- NIGNEABH_00349 46 2.77e-20 GGCGGCTCCC TTCTGATAATCAAATGTTTGATGTAAACGAATGCTTATCACGATAGGAT GCAGCT NIGNEABH_02917 46 3.83e-15 GAAGTCATAC TTCTTTCAAGCTAATTAGACGTTCTAACGACTACTATTAAGAAAAAGCT CCGGTA NIGNEABH_02094 26 1.97e-14 TACCCAGTCA TATCGATTATTAAGAAGTAAATGTAATCGTAATAATTACACGTCACGCT GCGAGGCGTC NIGNEABH_02106 44 1.69e-13 GTATAGACGA TACCTACATGTTAAGTCGAGAACGACAATATGGTCATATACCACATGAT AAACTAGA NIGNEABH_03932 44 2.10e-13 CCCGGCCAAC ATATCAGAATATATGATCATATGTTCATTTATTTCTTTGGGGATAGGCT GCCTAACC NIGNEABH_02757 20 4.81e-13 GCCTCCCGAC TTCTAACAGACAACAATTTGAACGTTAGATCCTATAGACTGTATCGTCA AGTGTTTTGT NIGNEABH_00092 39 5.49e-13 CACGCATCCG CACTATCTGATAAATTCTTCAACTCGTCAACCGATGTAACGCTGAAGCT CTCAGGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- NIGNEABH_00349 2.8e-20 45_[+2]_6 NIGNEABH_02917 3.8e-15 45_[+2]_6 NIGNEABH_02094 2e-14 25_[+2]_26 NIGNEABH_02106 1.7e-13 43_[+2]_8 NIGNEABH_03932 2.1e-13 43_[+2]_8 NIGNEABH_02757 4.8e-13 19_[+2]_32 NIGNEABH_00092 5.5e-13 38_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT width=49 seqs=7 NIGNEABH_00349 ( 46) TTCTGATAATCAAATGTTTGATGTAAACGAATGCTTATCACGATAGGAT 1 NIGNEABH_02917 ( 46) TTCTTTCAAGCTAATTAGACGTTCTAACGACTACTATTAAGAAAAAGCT 1 NIGNEABH_02094 ( 26) TATCGATTATTAAGAAGTAAATGTAATCGTAATAATTACACGTCACGCT 1 NIGNEABH_02106 ( 44) TACCTACATGTTAAGTCGAGAACGACAATATGGTCATATACCACATGAT 1 NIGNEABH_03932 ( 44) ATATCAGAATATATGATCATATGTTCATTTATTTCTTTGGGGATAGGCT 1 NIGNEABH_02757 ( 20) TTCTAACAGACAACAATTTGAACGTTAGATCCTATAGACTGTATCGTCA 1 NIGNEABH_00092 ( 39) CACTATCTGATAAATTCTTCAACTCGTCAACCGATGTAACGCTGAAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 13988 bayes= 11.5698 E= 6.0e+000 -49 -109 -945 190 109 -945 -945 158 -49 123 -945 -41 -945 -9 -945 190 50 -109 -9 58 183 -945 -945 58 -945 91 -109 58 183 -945 -945 58 150 -945 -9 -41 50 -945 -9 117 -49 49 -945 117 150 -945 -945 117 231 -945 -945 -945 150 -109 -109 -41 50 -945 -9 117 109 -945 -109 117 -49 -9 -109 117 -945 -109 -9 158 150 -945 -945 117 -49 -9 49 -41 209 -945 -109 -945 109 -945 -945 158 -945 49 49 -41 -945 -109 -9 158 109 -109 -945 117 109 -9 -109 -41 183 -945 -945 58 -49 91 -109 -41 50 -945 49 58 150 -945 -945 117 109 49 -945 -41 -49 -9 -109 117 -49 -945 49 117 109 -9 -945 58 -49 -9 -945 158 109 -945 -109 117 -49 -945 -109 190 150 -945 -945 117 50 49 -109 -41 150 -109 -109 -41 -945 49 91 -945 -49 -9 49 -41 183 -945 -945 58 -49 -9 -109 117 209 -109 -945 -945 50 -109 49 -41 -945 -945 149 -41 50 123 -945 -945 -49 -945 -945 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 7 E= 6.0e+000 0.142857 0.142857 0.000000 0.714286 0.428571 0.000000 0.000000 0.571429 0.142857 0.714286 0.000000 0.142857 0.000000 0.285714 0.000000 0.714286 0.285714 0.142857 0.285714 0.285714 0.714286 0.000000 0.000000 0.285714 0.000000 0.571429 0.142857 0.285714 0.714286 0.000000 0.000000 0.285714 0.571429 0.000000 0.285714 0.142857 0.285714 0.000000 0.285714 0.428571 0.142857 0.428571 0.000000 0.428571 0.571429 0.000000 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 0.571429 0.142857 0.142857 0.142857 0.285714 0.000000 0.285714 0.428571 0.428571 0.000000 0.142857 0.428571 0.142857 0.285714 0.142857 0.428571 0.000000 0.142857 0.285714 0.571429 0.571429 0.000000 0.000000 0.428571 0.142857 0.285714 0.428571 0.142857 0.857143 0.000000 0.142857 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.428571 0.428571 0.142857 0.000000 0.142857 0.285714 0.571429 0.428571 0.142857 0.000000 0.428571 0.428571 0.285714 0.142857 0.142857 0.714286 0.000000 0.000000 0.285714 0.142857 0.571429 0.142857 0.142857 0.285714 0.000000 0.428571 0.285714 0.571429 0.000000 0.000000 0.428571 0.428571 0.428571 0.000000 0.142857 0.142857 0.285714 0.142857 0.428571 0.142857 0.000000 0.428571 0.428571 0.428571 0.285714 0.000000 0.285714 0.142857 0.285714 0.000000 0.571429 0.428571 0.000000 0.142857 0.428571 0.142857 0.000000 0.142857 0.714286 0.571429 0.000000 0.000000 0.428571 0.285714 0.428571 0.142857 0.142857 0.571429 0.142857 0.142857 0.142857 0.000000 0.428571 0.571429 0.000000 0.142857 0.285714 0.428571 0.142857 0.714286 0.000000 0.000000 0.285714 0.142857 0.285714 0.142857 0.428571 0.857143 0.142857 0.000000 0.000000 0.285714 0.142857 0.428571 0.142857 0.000000 0.000000 0.857143 0.142857 0.285714 0.714286 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWCTNAYARDYWAADWYKWSAWSKWMACDWMYKHYWTWMASSAYARGCT MEME-2 regular expression -------------------------------------------------------------------------------- T[TA]C[TC][AGT][AT][CT][AT][AG][TAG][CT][AT]AA[TAG][AT][TC][TG][AT][GC]A[TA][CG][TG][AT][AC][AT]C[GAT][AT][AC][TC][GT][ACT][TC][AT]T[AT][CA]A[GC][GC][AT][TC]A[GA]G[CA]T -------------------------------------------------------------------------------- Time 59.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 width = 29 sites = 7 llr = 160 E-value = 3.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6414:4936:a1379:9143:::61a37 pos.-specific C ::19:611::7::6::117343::1::1: probability G :41:13::74::41:17:::17:3:1:1: matrix T a:3:414:::3:4:3:1:131:a737:43 bits 2.4 * * * * 2.2 * * * * 1.9 * * * * 1.7 * * * * * * * Relative 1.4 * * * ** * ** * * Entropy 1.2 * * * * ** * ** ** * (32.9 bits) 1.0 ** * ***** ** * ****** * 0.7 ** ** ******* ****** ****** * 0.5 ** ***************** ****** * 0.2 ***************************** 0.0 ----------------------------- Multilevel TAACACAAGACAGCAAGACACGTTATATA consensus GT TGT AGT TAT CAC GT AT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- NIGNEABH_01872 14 1.99e-13 TAAAGCTTAG TAACACTAGGCATAAAGCCAAGTGATATA ACGTCAACAC NIGNEABH_00727 43 1.17e-12 GACCGCGGCA TAACTGAAAACATCAACACTGCTTTTATA AGCACTAACA NIGNEABH_00351 5 7.24e-12 AGCG TAGCTCAAGGTATATAGAAACCTTATAAT CTAAGGCGGC NIGNEABH_00733 39 2.01e-11 CGTCCAGAGC TGTCGCTAGGCAGCTAGACCTGTGTTATA CCGTAGCTCA NIGNEABH_03209 13 3.93e-11 CCACCGACAT TGACTTTAGATAGGAAGACCAGTTAAACT GCCGATGGCT NIGNEABH_00674 64 1.39e-10 CGGCCATCGC TACAACACAACAGCAAGACTCGTTAGAGA GAACGGAT NIGNEABH_01484 20 3.18e-10 TACCGAATTG TGTCAGCAGACAACAGTATACGTTCTAAA TAATCAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- NIGNEABH_01872 2e-13 13_[+3]_58 NIGNEABH_00727 1.2e-12 42_[+3]_29 NIGNEABH_00351 7.2e-12 4_[+3]_67 NIGNEABH_00733 2e-11 38_[+3]_33 NIGNEABH_03209 3.9e-11 12_[+3]_59 NIGNEABH_00674 1.4e-10 63_[+3]_8 NIGNEABH_01484 3.2e-10 19_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRWCWSWAGRCAKMAAGACHMGTTWTAWA width=29 seqs=7 NIGNEABH_01872 ( 14) TAACACTAGGCATAAAGCCAAGTGATATA 1 NIGNEABH_00727 ( 43) TAACTGAAAACATCAACACTGCTTTTATA 1 NIGNEABH_00351 ( 5) TAGCTCAAGGTATATAGAAACCTTATAAT 1 NIGNEABH_00733 ( 39) TGTCGCTAGGCAGCTAGACCTGTGTTATA 1 NIGNEABH_03209 ( 13) TGACTTTAGATAGGAAGACCAGTTAAACT 1 NIGNEABH_00674 ( 64) TACAACACAACAGCAAGACTCGTTAGAGA 1 NIGNEABH_01484 ( 20) TGTCAGCAGACAACAGTATACGTTCTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 19368 bayes= 12.0394 E= 3.7e-001 -945 -945 -945 239 150 -945 49 -945 109 -109 -109 58 -49 149 -945 -945 109 -945 -109 117 -945 91 -9 -41 109 -109 -945 117 209 -109 -945 -945 50 -945 123 -945 150 -945 49 -945 -945 123 -945 58 231 -945 -945 -945 -49 -945 49 117 50 91 -109 -945 183 -945 -945 58 209 -945 -109 -945 -945 -109 123 -41 209 -109 -945 -945 -49 123 -945 -41 109 -9 -945 58 50 49 -109 -41 -945 -9 123 -945 -945 -945 -945 239 -945 -945 -9 190 150 -109 -945 58 -49 -945 -109 190 231 -945 -945 -945 50 -109 -109 117 183 -945 -945 58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 7 E= 3.7e-001 0.000000 0.000000 0.000000 1.000000 0.571429 0.000000 0.428571 0.000000 0.428571 0.142857 0.142857 0.285714 0.142857 0.857143 0.000000 0.000000 0.428571 0.000000 0.142857 0.428571 0.000000 0.571429 0.285714 0.142857 0.428571 0.142857 0.000000 0.428571 0.857143 0.142857 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.714286 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.428571 0.428571 0.285714 0.571429 0.142857 0.000000 0.714286 0.000000 0.000000 0.285714 0.857143 0.000000 0.142857 0.000000 0.000000 0.142857 0.714286 0.142857 0.857143 0.142857 0.000000 0.000000 0.142857 0.714286 0.000000 0.142857 0.428571 0.285714 0.000000 0.285714 0.285714 0.428571 0.142857 0.142857 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.571429 0.142857 0.000000 0.285714 0.142857 0.000000 0.142857 0.714286 1.000000 0.000000 0.000000 0.000000 0.285714 0.142857 0.142857 0.428571 0.714286 0.000000 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWCWSWAGRCAKMAAGACHMGTTWTAWA MEME-3 regular expression -------------------------------------------------------------------------------- T[AG][AT]C[AT][CG][AT]A[GA][AG][CT]A[GT][CA][AT]AGAC[ACT][CA][GC]T[TG][AT]TA[TA][AT] -------------------------------------------------------------------------------- Time 88.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- NIGNEABH_00002 5.36e-01 100 NIGNEABH_00030 5.49e-01 100 NIGNEABH_00036 9.83e-01 100 NIGNEABH_00045 9.96e-01 100 NIGNEABH_00049 1.95e-01 100 NIGNEABH_00050 6.89e-01 100 NIGNEABH_00054 4.80e-01 100 NIGNEABH_00059 9.83e-01 100 NIGNEABH_00060 9.79e-01 100 NIGNEABH_00062 3.91e-01 100 NIGNEABH_00063 6.22e-01 100 NIGNEABH_00076 5.54e-01 100 NIGNEABH_00087 7.41e-02 100 NIGNEABH_00092 1.43e-09 38_[+2(5.49e-13)]_13 NIGNEABH_00113 8.39e-01 100 NIGNEABH_00117 4.12e-01 100 NIGNEABH_00130 9.19e-01 100 NIGNEABH_00133 5.13e-01 100 NIGNEABH_00148 2.46e-02 100 NIGNEABH_00157 6.43e-01 100 NIGNEABH_00173 2.99e-01 100 NIGNEABH_00180 2.94e-01 100 NIGNEABH_00197 2.05e-01 100 NIGNEABH_00214 5.50e-02 100 NIGNEABH_00248 3.17e-01 100 NIGNEABH_00251 7.73e-02 100 NIGNEABH_00258 4.15e-01 100 NIGNEABH_00292 6.41e-02 100 NIGNEABH_00294 1.13e-01 100 NIGNEABH_00322 3.80e-01 100 NIGNEABH_00349 2.95e-16 45_[+2(2.77e-20)]_6 NIGNEABH_00351 8.44e-09 4_[+3(7.24e-12)]_67 NIGNEABH_00399 1.92e-01 100 NIGNEABH_00468 6.50e-01 100 NIGNEABH_00489 7.32e-01 100 NIGNEABH_00497 4.63e-02 100 NIGNEABH_00499 3.24e-01 100 NIGNEABH_00510 8.72e-01 100 NIGNEABH_00520 1.91e-01 100 NIGNEABH_00619 1.76e-01 100 NIGNEABH_00671 7.89e-01 100 NIGNEABH_00674 5.77e-07 63_[+3(1.39e-10)]_8 NIGNEABH_00680 8.81e-01 100 NIGNEABH_00681 4.86e-01 100 NIGNEABH_00682 5.88e-01 100 NIGNEABH_00691 3.21e-01 100 NIGNEABH_00692 6.36e-01 100 NIGNEABH_00693 8.53e-01 100 NIGNEABH_00694 1.44e-01 100 NIGNEABH_00698 1.11e-01 100 NIGNEABH_00701 2.53e-01 100 NIGNEABH_00708 9.07e-01 100 NIGNEABH_00709 2.44e-02 59_[+3(5.51e-05)]_12 NIGNEABH_00713 6.91e-01 100 NIGNEABH_00716 8.17e-02 28_[+1(8.90e-05)]_32 NIGNEABH_00724 3.06e-01 100 NIGNEABH_00725 2.18e-01 100 NIGNEABH_00726 9.31e-02 100 NIGNEABH_00727 3.11e-09 42_[+3(1.17e-12)]_29 NIGNEABH_00733 2.95e-09 38_[+3(2.01e-11)]_33 NIGNEABH_00742 1.69e-02 23_[+1(4.80e-05)]_37 NIGNEABH_00743 7.41e-02 100 NIGNEABH_00744 2.62e-01 100 NIGNEABH_00745 5.57e-09 16_[+1(1.21e-12)]_44 NIGNEABH_00746 8.17e-18 10_[+1(2.74e-22)]_50 NIGNEABH_00747 8.66e-01 100 NIGNEABH_00748 2.13e-01 100 NIGNEABH_00749 6.86e-01 100 NIGNEABH_00750 4.57e-01 100 NIGNEABH_00751 6.17e-01 100 NIGNEABH_00752 8.51e-01 100 NIGNEABH_00756 8.91e-01 100 NIGNEABH_00757 7.65e-01 100 NIGNEABH_00758 1.81e-01 100 NIGNEABH_00759 8.79e-01 100 NIGNEABH_00760 6.74e-11 3_[+1(6.85e-15)]_57 NIGNEABH_00761 2.29e-01 100 NIGNEABH_00762 8.49e-10 31_[+1(3.05e-12)]_29 NIGNEABH_00763 9.58e-01 100 NIGNEABH_00764 7.29e-01 100 NIGNEABH_00765 6.40e-01 100 NIGNEABH_00772 6.65e-01 100 NIGNEABH_00777 4.37e-01 100 NIGNEABH_00778 5.62e-01 100 NIGNEABH_00779 2.08e-01 100 NIGNEABH_00812 3.41e-01 100 NIGNEABH_00839 1.74e-01 100 NIGNEABH_00849 7.88e-01 100 NIGNEABH_00870 8.87e-01 100 NIGNEABH_00875 1.26e-01 100 NIGNEABH_00931 5.62e-01 100 NIGNEABH_01050 9.39e-01 100 NIGNEABH_01071 2.95e-01 100 NIGNEABH_01076 5.11e-01 100 NIGNEABH_01077 2.63e-01 100 NIGNEABH_01105 2.28e-01 100 NIGNEABH_01110 8.14e-01 100 NIGNEABH_01144 3.28e-01 100 NIGNEABH_01176 2.43e-01 100 NIGNEABH_01195 5.34e-01 100 NIGNEABH_01220 1.99e-01 100 NIGNEABH_01238 9.63e-01 100 NIGNEABH_01248 2.87e-01 100 NIGNEABH_01261 6.89e-01 100 NIGNEABH_01292 7.30e-01 100 NIGNEABH_01294 1.90e-01 100 NIGNEABH_01319 5.96e-01 100 NIGNEABH_01328 8.37e-01 100 NIGNEABH_01340 8.41e-01 100 NIGNEABH_01360 5.02e-01 100 NIGNEABH_01373 1.61e-01 100 NIGNEABH_01374 9.75e-01 100 NIGNEABH_01377 2.52e-17 58_[+1(1.36e-21)]_2 NIGNEABH_01380 7.60e-01 100 NIGNEABH_01381 5.91e-01 100 NIGNEABH_01382 3.08e-01 100 NIGNEABH_01383 8.92e-01 100 NIGNEABH_01384 5.07e-01 100 NIGNEABH_01385 2.31e-09 6_[+1(3.85e-13)]_54 NIGNEABH_01386 8.46e-01 100 NIGNEABH_01387 2.61e-02 100 NIGNEABH_01470 2.33e-01 100 NIGNEABH_01484 4.51e-09 19_[+3(3.18e-10)]_52 NIGNEABH_01543 6.75e-01 100 NIGNEABH_01558 7.76e-01 100 NIGNEABH_01590 5.90e-01 100 NIGNEABH_01621 9.77e-02 100 NIGNEABH_01624 1.94e-01 100 NIGNEABH_01634 4.34e-01 100 NIGNEABH_01644 9.05e-01 100 NIGNEABH_01648 9.36e-01 100 NIGNEABH_01665 9.63e-01 100 NIGNEABH_01717 8.04e-01 100 NIGNEABH_01718 9.15e-01 100 NIGNEABH_01731 6.95e-01 100 NIGNEABH_01732 1.40e-01 100 NIGNEABH_01733 9.58e-01 100 NIGNEABH_01775 7.22e-01 100 NIGNEABH_01803 8.04e-14 58_[+1(2.17e-18)]_2 NIGNEABH_01812 9.77e-01 100 NIGNEABH_01820 1.41e-01 100 NIGNEABH_01872 6.56e-11 13_[+3(1.99e-13)]_58 NIGNEABH_01926 7.76e-01 100 NIGNEABH_01944 1.96e-01 100 NIGNEABH_02031 6.83e-01 100 NIGNEABH_02032 7.68e-01 100 NIGNEABH_02033 6.37e-01 100 NIGNEABH_02063 8.83e-01 100 NIGNEABH_02068 6.24e-01 100 NIGNEABH_02094 1.71e-12 25_[+2(1.97e-14)]_26 NIGNEABH_02106 9.77e-10 43_[+2(1.69e-13)]_8 NIGNEABH_02122 3.32e-02 100 NIGNEABH_02134 8.67e-01 100 NIGNEABH_02147 7.73e-01 100 NIGNEABH_02168 7.98e-01 100 NIGNEABH_02169 7.56e-01 100 NIGNEABH_02170 6.10e-01 100 NIGNEABH_02171 1.39e-01 100 NIGNEABH_02182 9.70e-01 100 NIGNEABH_02208 2.63e-01 100 NIGNEABH_02209 9.64e-01 100 NIGNEABH_02247 3.58e-01 100 NIGNEABH_02311 7.48e-01 100 NIGNEABH_02374 2.60e-01 100 NIGNEABH_02380 8.07e-01 100 NIGNEABH_02405 9.61e-01 100 NIGNEABH_02453 3.64e-01 100 NIGNEABH_02456 8.73e-01 100 NIGNEABH_02490 2.33e-01 100 NIGNEABH_02506 9.13e-01 100 NIGNEABH_02507 9.02e-01 100 NIGNEABH_02511 9.64e-01 100 NIGNEABH_02512 9.43e-01 100 NIGNEABH_02515 1.31e-01 100 NIGNEABH_02544 1.04e-01 100 NIGNEABH_02545 2.95e-01 100 NIGNEABH_02575 5.89e-01 100 NIGNEABH_02576 7.76e-01 100 NIGNEABH_02639 1.55e-01 100 NIGNEABH_02662 2.94e-01 100 NIGNEABH_02669 2.08e-01 100 NIGNEABH_02670 7.63e-01 100 NIGNEABH_02681 5.92e-01 100 NIGNEABH_02728 1.47e-02 [+2(7.35e-05)]_51 NIGNEABH_02757 7.50e-10 19_[+2(4.81e-13)]_32 NIGNEABH_02760 2.48e-01 100 NIGNEABH_02779 2.18e-02 100 NIGNEABH_02781 9.79e-01 100 NIGNEABH_02843 7.94e-01 100 NIGNEABH_02844 5.14e-01 100 NIGNEABH_02845 9.36e-01 100 NIGNEABH_02851 7.25e-01 100 NIGNEABH_02852 6.04e-01 100 NIGNEABH_02859 9.25e-01 100 NIGNEABH_02861 1.27e-01 100 NIGNEABH_02884 3.17e-01 100 NIGNEABH_02896 7.25e-01 100 NIGNEABH_02917 2.48e-11 45_[+2(3.83e-15)]_6 NIGNEABH_02923 3.53e-01 100 NIGNEABH_02926 8.33e-01 100 NIGNEABH_02979 8.72e-01 100 NIGNEABH_02980 6.80e-01 100 NIGNEABH_03007 5.93e-01 100 NIGNEABH_03028 8.66e-01 100 NIGNEABH_03030 6.82e-01 100 NIGNEABH_03031 9.60e-01 100 NIGNEABH_03046 6.99e-01 100 NIGNEABH_03051 8.34e-01 100 NIGNEABH_03054 9.45e-01 100 NIGNEABH_03071 2.27e-01 100 NIGNEABH_03119 5.87e-02 100 NIGNEABH_03133 4.73e-01 100 NIGNEABH_03201 9.69e-01 100 NIGNEABH_03206 9.55e-01 100 NIGNEABH_03207 7.17e-01 100 NIGNEABH_03209 3.20e-09 12_[+3(3.93e-11)]_59 NIGNEABH_03211 9.68e-01 100 NIGNEABH_03232 9.08e-01 100 NIGNEABH_03248 5.68e-01 100 NIGNEABH_03279 8.54e-01 100 NIGNEABH_03316 9.07e-01 100 NIGNEABH_03323 9.61e-01 100 NIGNEABH_03329 3.93e-01 100 NIGNEABH_03339 1.65e-01 100 NIGNEABH_03373 4.94e-01 100 NIGNEABH_03392 9.61e-01 100 NIGNEABH_03419 8.49e-01 100 NIGNEABH_03435 3.74e-01 100 NIGNEABH_03438 9.97e-01 100 NIGNEABH_03457 4.68e-01 100 NIGNEABH_03462 9.92e-01 100 NIGNEABH_03466 3.71e-01 100 NIGNEABH_03469 9.55e-01 100 NIGNEABH_03502 8.48e-01 100 NIGNEABH_03509 4.34e-02 100 NIGNEABH_03546 2.07e-01 100 NIGNEABH_03570 7.89e-01 100 NIGNEABH_03573 9.56e-01 100 NIGNEABH_03586 1.01e-01 100 NIGNEABH_03595 8.99e-01 100 NIGNEABH_03627 7.89e-01 100 NIGNEABH_03628 2.09e-01 100 NIGNEABH_03641 8.61e-01 100 NIGNEABH_03642 6.56e-01 100 NIGNEABH_03643 5.22e-01 100 NIGNEABH_03644 9.80e-01 100 NIGNEABH_03645 9.81e-01 100 NIGNEABH_03646 2.91e-01 100 NIGNEABH_03667 6.27e-01 100 NIGNEABH_03671 9.78e-02 100 NIGNEABH_03742 9.67e-01 100 NIGNEABH_03759 5.22e-01 100 NIGNEABH_03760 2.73e-01 100 NIGNEABH_03768 5.46e-01 100 NIGNEABH_03784 7.71e-01 100 NIGNEABH_03826 1.89e-01 100 NIGNEABH_03859 3.15e-01 100 NIGNEABH_03896 6.03e-01 100 NIGNEABH_03906 3.63e-01 100 NIGNEABH_03907 8.43e-01 100 NIGNEABH_03932 1.72e-12 43_[+2(2.10e-13)]_8 NIGNEABH_03982 5.54e-01 100 NIGNEABH_04025 2.90e-01 100 NIGNEABH_04028 1.43e-01 100 NIGNEABH_04036 7.80e-01 100 NIGNEABH_04055 2.11e-01 100 NIGNEABH_04110 3.67e-01 100 NIGNEABH_04114 7.75e-01 100 NIGNEABH_04120 1.22e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************