Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.3.0, (Release date: 6 PDT 20)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
DATABASE
sequence.fasta
Database contains
1
sequences,
28539
residues
MOTIFS meme.txt (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 12 | CTTAACAAAACG |
Random model letter frequencies
(from non-redundant database):
A 0.282 C 0.222 G 0.229 T 0.267
Motif | Sequence Name | Start | End | p-value | q-value |
---|---|---|---|---|---|
1 | NC_046965.1 | 64 | 75 | 8.96e-08 | 0.000851 |
1 | NC_046965.1 | 23773 | 23784 | 8.96e-08 | 0.000851 |
1 | NC_046965.1 | 25753 | 25764 | 8.96e-08 | 0.000851 |
1 | NC_046965.1 | 25342 | 25353 | 2.76e-07 | 0.00197 |
1 | NC_046965.1 | 25140 | 25151 | 2.77e-06 | 0.0158 |
1 | NC_046965.1 | 19978 | 19989 | 5.82e-06 | 0.0277 |
1 | NC_046965.1 | 23530 | 23541 | 8.26e-06 | 0.0319 |
1 | NC_046965.1 | 19342 | 19353 | 8.94e-06 | 0.0319 |
1 | NC_046965.1 | 15494 | 15505 | 7.37e-05 | 0.234 |
1 | NC_046965.1 | 23924 | 23935 | 8.3e-05 | 0.237 |
1 | NC_046965.1 | 22640 | 22651 | 9.31e-05 | 0.241 |
Command line:
fimo --o result_gen --motif 1 --norc meme.txt sequence.fasta
Settings:
output directory = result_gen | MEME file name = meme.txt | sequence file name = sequence.fasta |
background file name = (null) | motif name = motif | allow clobber = false |
compute q-values = true | output p-threshold set = false | output q-threshold set = false |
text only = false | scan both strands = false | max sequence length = 250000000 |
output q-value threshold = 1 | output p-value threshold = 0.0001 | pseudocount = 0.1 |
verbosity = 2 | selected motif = 1 | = |
This information can be useful in the event you wish to report a problem with the FIMO software.