TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: lm_genome.fasta
           12 sequences; 2,945,078 total letters



Query= sp|P80643|ACP_BACSU Acyl carrier protein OS=Bacillus subtilis
(strain 168) GN=acpA PE=1 SV=1

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL591981|AL591981 Listeria monocytogenes strain EGD, compl...  79.7    3e-17


> embl|AL591981|AL591981 Listeria monocytogenes strain EGD, complete 
genome, segment 9/12 
Length=347050

 Score = 79.7 bits (195),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 60/74 (82%), Positives = 66/74 (90%), Gaps = 0/74 (0%)
 Frame = -2

Query  1       MADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSldvvelvmeledefdmeISDEDA  60
               MA+ LE+VTKIIVDRLGV+E+ V LEASFKEDLGADSLDVVELVMELEDEF +EISD DA
Sbjct  128274  MAEVLEKVTKIIVDRLGVEESKVTLEASFKEDLGADSLDVVELVMELEDEFGVEISDGDA  128095

Query  61      EKIATVGDAVNYIQ  74
               E I TVGDAV YI+
Sbjct  128094  ENINTVGDAVKYIE  128053



Lambda     K      H
   0.309    0.129    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 24526700


  Database: lm_genome.fasta
    Posted date:  Oct 24, 2012  10:18 PM
  Number of letters in database: 2,945,078
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40