BLASTP 2.2.25+


Query= D89965_1 [66 - 155] Rattus norvegicus mRNA for RSS, complete cds.

Length=30

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.335    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 4472


Query= D89965_2 [56 - 169] Rattus norvegicus mRNA for RSS, complete cds.

Length=38

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.308    0.106    0.269 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 5239


Query= D89965_3 [245 - 316] Rattus norvegicus mRNA for RSS, complete cds.

Length=24

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.339    0.147    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 4224


Query= D89965_4 [332 - 379] Rattus norvegicus mRNA for RSS, complete cds.

Length=16

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.327    0.128    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 2816


Query= D89965_5 [163 - 432] Rattus norvegicus mRNA for RSS, complete cds.

Length=90

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


 Score = 12.3 bits (20),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 4/10 (40%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  8   FTFKQFEQRK  17
           FT  +  +RK
Sbjct  55  FTLFELFERK  64



Lambda     K      H
   0.327    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 12312


Query= D89965_6 [433 - 350] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=28

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 4325


Query= D89965_7 [341 - 297] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=15

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


 Score = 11.5 bits (18),  Expect = 0.84, Method: Composition-based stats.
 Identities = 3/8 (38%), Positives = 5/8 (63%), Gaps = 0/8 (0%)

Query  2   WSSLVMVR  9
           W +  M+R
Sbjct  83  WRTDRMLR  90



Lambda     K      H
   0.331    0.134    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 2640


Query= D89965_8 [218 - 3] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=72

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


***** No hits found *****



Lambda     K      H
   0.327    0.132    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 9840


Query= D89965_9 [294 - 1] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=98

Subject= sp|P0A7B8|HSLV_ECOLI ATP-dependent protease subunit HslV
OS=Escherichia coli (strain K12) GN=hslV PE=1 SV=2

Length=176


 Score =  200 bits (509),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)

Query  1    MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR  60
            MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR
Sbjct  28   MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR  87

Query  61   MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS  98
            MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS
Sbjct  88   MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS  125



Lambda     K      H
   0.320    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 13608




Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40