BLASTP 2.2.26+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: proteo.fasta
           48,182 sequences; 14,146,411 total letters



Query= CLPX_BACSU

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding sub...   840    0.0   
  sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub...   733    0.0   
  sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding sub...   712    0.0   
  sp|Q891J8|CLPX_CLOTE ATP-dependent Clp protease ATP-binding sub...   596    0.0   
  sp|A7FYI1|CLPX_CLOB1 ATP-dependent Clp protease ATP-binding sub...   593    0.0   
  sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding sub...   580    0.0   
  tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s...   560    0.0   
  sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU;     101    2e-23 
  sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU;     100    5e-23 
  sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY;     100    8e-23 
  sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU;    97.8    4e-22 
  C3F5U0_BACAN ATP-dependent protease ATPase subunit HslU             97.8    5e-22 
  tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit;   65.9    2e-11 
  B0AY46_BACAN Negative regulator of genetic competence ClpC/MecB     60.5    1e-09 
  tr|Q890L5|Q890L5_CLOTE Negative regulator of genetic competence...  57.4    9e-09 
  sp|P37571|CLPC_BACSU Negative regulator of genetic competence C...  56.6    2e-08 
  sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding sub...  54.7    6e-08 
  tr|Q899V4|Q899V4_CLOTE Negative regulator of genetic competence...  52.4    4e-07 
  tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s...  51.2    8e-07 
  tr|A7FZ97|A7FZ97_CLOB1 Putative negative regulator of genetic c...  51.2    1e-06 
  tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH;     50.4    1e-06 
  tr|A7FYT8|A7FYT8_CLOB1 ATP-dependent zinc metalloprotease FtsH;     49.3    3e-06 
  tr|Q82YZ7|Q82YZ7_ENTFA ATP-dependent Clp protease, ATP-binding ...  45.4    7e-05 
  tr|Q899H3|Q899H3_CLOTE ATP-dependent zinc metalloprotease FtsH;     45.1    7e-05 
  tr|B0S3J0|B0S3J0_FINM2 ATP-dependent protease Clp ATP-binding s...  45.1    8e-05 
  tr|A7FZB1|A7FZB1_CLOB1 ATP-dependent zinc metalloprotease FtsH;     43.5    2e-04 
  tr|Q891B9|Q891B9_CLOTE ATP-dependent zinc metalloprotease FtsH;     42.7    4e-04 
  tr|Q837W9|Q837W9_ENTFA ATP-dependent Clp protease, ATP-binding ...  42.4    5e-04 
  tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH;     42.0    6e-04 
  B1SHF4_BACAN ATP-dependent zinc metalloprotease FtsH                41.6    8e-04 
  C2NBK7_BACAN ATP-dependent zinc metalloprotease FtsH                41.6    8e-04 
  B0AWL5_BACAN ATP-dependent zinc metalloprotease FtsH                41.6    8e-04 




#далее приводились сами выравнивания




Lambda     K      H
   0.315    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 2935727346


  Database: proteo.fasta
    Posted date:  Mar 10, 2013  10:45 PM
  Number of letters in database: 14,146,411
  Number of sequences in database:  48,182



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40