REM -------------------------------------------------------------------- 2LH8 REM 2LH8 REM STRIDE: Knowledge-based secondary structure assignment 2LH8 REM Please cite: D.Frishman & P.Argos, Proteins XX, XXX-XXX, 1995 2LH8 REM 2LH8 REM Residue accessible surface area calculation 2LH8 REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LH8 REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LH8 REM 2LH8 REM ------------------------ General information ----------------------- 2LH8 REM 2LH8 HDR MEMBRANE PROTEIN 05-AUG-11 2LH8 2LH8 CMP MOL_ID: 1; 2LH8 CMP MOLECULE: MAJOR PRION PROTEIN; 2LH8 CMP CHAIN: A; 2LH8 CMP FRAGMENT: UNP RESIDUES 125-228; 2LH8 CMP SYNONYM: PRP, PRP27-30, PRP33-35C; 2LH8 CMP ENGINEERED: YES 2LH8 SRC MOL_ID: 1; 2LH8 SRC ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; 2LH8 SRC ORGANISM_COMMON: SYRIAN GOLDEN HAMSTER; 2LH8 SRC ORGANISM_TAXID: 10036; 2LH8 SRC GENE: PRNP, PRP; 2LH8 SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2LH8 SRC EXPRESSION_SYSTEM_TAXID: 562; 2LH8 SRC EXPRESSION_SYSTEM_STRAIN: B12(DE3); 2LH8 SRC EXPRESSION_SYSTEM_VECTOR: PET15B 2LH8 AUT R.PEREZ-PINEIRO,T.C.BJORNDAHL,M.BERJANSKII,D.HAU,L.LI,A.HUANG 2LH8 AUT E.GIBBS,C.LADNER,Y.WEI DONG,A.ABERA,N.R.CASHMAN,D.WISHART 2LH8 REM 2LH8 REM -------------------- Secondary structure summary ------------------- 2LH8 REM 2LH8 CHN /home/proj/stride/tmp/tmpTmj8a2pdb A 2LH8 REM 2LH8 REM . . . . . 2LH8 SEQ 1 LGGYMLGSAMSRPMMHFGNDWEDRYYRENMNRYPNQVYYRPVDQYNNQNN 50 2LH8 STR TTTTEEEEETTTT HHHHHHHHHHHTTT EEEE TTTT HHH 2LH8 REM 2LH8 REM . . . . . 2LH8 SEQ 51 FVHDCVNITIKQHTVTTTTKGENFTETDIKIMERVVEQMCTTQYQKESQA 100 2LH8 STR HHHHHHHHHHHHHHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHH 2LH8 REM 2LH8 REM 2LH8 SEQ 101 YYDG 104 2LH8 STR HHH 2LH8 REM 2LH8 REM 2LH8 REM 2LH8 LOC AlphaHelix ASP 54 A MET 64 A 2LH8 LOC AlphaHelix GLN 82 A THR 103 A 2LH8 LOC AlphaHelix GLU 110 A ASP 137 A 2LH8 LOC Strand MET 39 A ALA 43 A 2LH8 LOC Strand GLN 70 A TYR 73 A 2LH8 LOC TurnIV LEU 35 A TYR 38 A 2LH8 LOC TurnIV MET 44 A PRO 47 A 2LH8 LOC TurnI MET 64 A TYR 67 A 2LH8 LOC TurnI VAL 76 A TYR 79 A 2LH8 LOC TurnIV THR 103 A GLU 106 A 2LH8 REM 2LH8 REM --------------- Detailed secondary structure assignment------------- 2LH8 REM 2LH8 REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LH8 ASG LEU A 35 1 T Turn 360.00 -54.75 132.0 2LH8 ASG GLY A 36 2 T Turn 122.96 -43.27 84.1 2LH8 ASG GLY A 37 3 T Turn 163.19 67.11 32.5 2LH8 ASG TYR A 38 4 T Turn -138.66 153.29 47.3 2LH8 ASG MET A 39 5 E Strand -145.16 129.50 108.2 2LH8 ASG LEU A 40 6 E Strand -75.16 118.86 81.3 2LH8 ASG GLY A 41 7 E Strand -65.20 -37.98 16.8 2LH8 ASG SER A 42 8 E Strand 132.27 -176.72 78.3 2LH8 ASG ALA A 43 9 E Strand -68.45 144.88 56.8 2LH8 ASG MET A 44 10 T Turn -57.01 129.32 22.0 2LH8 ASG SER A 45 11 T Turn -75.52 63.05 117.5 2LH8 ASG ARG A 46 12 T Turn 36.85 70.94 202.3 2LH8 ASG PRO A 47 13 T Turn -42.11 -40.05 23.7 2LH8 ASG MET A 48 14 C Coil 50.55 30.73 189.4 2LH8 ASG MET A 49 15 C Coil -83.31 -162.40 111.0 2LH8 ASG HIS A 50 16 C Coil -155.67 167.96 142.9 2LH8 ASG PHE A 51 17 C Coil -119.20 -38.64 27.7 2LH8 ASG GLY A 52 18 C Coil 95.15 7.37 64.9 2LH8 ASG ASN A 53 19 C Coil -133.99 103.72 89.9 2LH8 ASG ASP A 54 20 H AlphaHelix -62.02 -30.02 126.3 2LH8 ASG TRP A 55 21 H AlphaHelix -61.90 -29.74 195.8 2LH8 ASG GLU A 56 22 H AlphaHelix -87.04 -32.57 28.9 2LH8 ASG ASP A 57 23 H AlphaHelix -51.48 -54.94 75.2 2LH8 ASG ARG A 58 24 H AlphaHelix -63.13 -48.72 130.8 2LH8 ASG TYR A 59 25 H AlphaHelix -63.12 -25.56 62.5 2LH8 ASG TYR A 60 26 H AlphaHelix -62.81 -59.06 26.1 2LH8 ASG ARG A 61 27 H AlphaHelix -63.15 -20.02 197.6 2LH8 ASG GLU A 62 28 H AlphaHelix -98.48 -18.22 87.7 2LH8 ASG ASN A 63 29 H AlphaHelix -130.60 -0.77 7.0 2LH8 ASG MET A 64 30 H AlphaHelix -54.10 -20.82 67.6 2LH8 ASG ASN A 65 31 T Turn -69.76 -26.49 133.0 2LH8 ASG ARG A 66 32 T Turn -99.97 -36.08 133.7 2LH8 ASG TYR A 67 33 T Turn -66.04 147.77 13.1 2LH8 ASG PRO A 68 34 C Coil -70.71 97.17 2.2 2LH8 ASG ASN A 69 35 C Coil -90.58 17.27 48.5 2LH8 ASG GLN A 70 36 E Strand -145.37 158.11 49.7 2LH8 ASG VAL A 71 37 E Strand -130.70 137.62 3.0 2LH8 ASG TYR A 72 38 E Strand -111.55 130.46 53.1 2LH8 ASG TYR A 73 39 E Strand -133.68 154.75 6.6 2LH8 ASG ARG A 74 40 C Coil -68.98 149.02 73.1 2LH8 ASG PRO A 75 41 C Coil -57.56 149.66 58.2 2LH8 ASG VAL A 76 42 T Turn -71.91 -11.40 7.2 2LH8 ASG ASP A 77 43 T Turn -55.16 -34.16 70.4 2LH8 ASG GLN A 78 44 T Turn -86.71 4.13 120.5 2LH8 ASG TYR A 79 45 T Turn -131.60 171.32 67.8 2LH8 ASG ASN A 80 46 C Coil -152.66 1.12 124.7 2LH8 ASG ASN A 81 47 C Coil -156.67 136.88 91.1 2LH8 ASG GLN A 82 48 H AlphaHelix -73.39 -54.26 86.5 2LH8 ASG ASN A 83 49 H AlphaHelix -56.67 -41.27 111.2 2LH8 ASG ASN A 84 50 H AlphaHelix -70.74 -47.93 118.8 2LH8 ASG PHE A 85 51 H AlphaHelix -56.81 -44.40 5.3 2LH8 ASG VAL A 86 52 H AlphaHelix -67.68 -34.55 1.0 2LH8 ASG HIS A 87 53 H AlphaHelix -59.64 -45.34 110.5 2LH8 ASG ASP A 88 54 H AlphaHelix -65.83 -37.42 58.3 2LH8 ASG CYS A 89 55 H AlphaHelix -65.08 -47.58 0.6 2LH8 ASG VAL A 90 56 H AlphaHelix -64.45 -40.20 4.4 2LH8 ASG ASN A 91 57 H AlphaHelix -58.56 -52.44 77.5 2LH8 ASG ILE A 92 58 H AlphaHelix -68.31 -37.17 26.7 2LH8 ASG THR A 93 59 H AlphaHelix -71.55 -43.04 0.2 2LH8 ASG ILE A 94 60 H AlphaHelix -63.08 -46.18 31.1 2LH8 ASG LYS A 95 61 H AlphaHelix -56.85 -51.59 142.3 2LH8 ASG GLN A 96 62 H AlphaHelix -72.11 -47.78 88.4 2LH8 ASG HIS A 97 63 H AlphaHelix -77.01 -29.23 32.7 2LH8 ASG THR A 98 64 H AlphaHelix -61.98 -46.53 15.0 2LH8 ASG VAL A 99 65 H AlphaHelix -58.76 -45.79 84.5 2LH8 ASG THR A 100 66 H AlphaHelix -59.19 -38.25 83.3 2LH8 ASG THR A 101 67 H AlphaHelix -91.66 -34.42 16.6 2LH8 ASG THR A 102 68 H AlphaHelix -57.92 -43.74 56.1 2LH8 ASG THR A 103 69 H AlphaHelix -76.27 -7.32 119.4 2LH8 ASG LYS A 104 70 T Turn -85.29 -19.25 182.9 2LH8 ASG GLY A 105 71 T Turn 133.08 5.41 66.6 2LH8 ASG GLU A 106 72 T Turn -81.58 166.40 23.6 2LH8 ASG ASN A 107 73 C Coil -152.18 91.64 121.1 2LH8 ASG PHE A 108 74 C Coil -55.52 152.72 77.0 2LH8 ASG THR A 109 75 C Coil -122.87 175.28 53.4 2LH8 ASG GLU A 110 76 H AlphaHelix -55.52 -30.01 131.2 2LH8 ASG THR A 111 77 H AlphaHelix -65.56 -50.96 39.7 2LH8 ASG ASP A 112 78 H AlphaHelix -62.55 -42.47 9.6 2LH8 ASG ILE A 113 79 H AlphaHelix -56.70 -44.52 33.1 2LH8 ASG LYS A 114 80 H AlphaHelix -66.47 -36.38 94.5 2LH8 ASG ILE A 115 81 H AlphaHelix -64.55 -46.40 0.0 2LH8 ASG MET A 116 82 H AlphaHelix -61.77 -58.30 2.8 2LH8 ASG GLU A 117 83 H AlphaHelix -52.53 -44.11 94.8 2LH8 ASG ARG A 118 84 H AlphaHelix -60.41 -54.42 140.1 2LH8 ASG VAL A 119 85 H AlphaHelix -80.44 -35.92 6.7 2LH8 ASG VAL A 120 86 H AlphaHelix -61.25 -52.13 1.4 2LH8 ASG GLU A 121 87 H AlphaHelix -56.32 -43.72 85.0 2LH8 ASG GLN A 122 88 H AlphaHelix -58.41 -48.26 90.1 2LH8 ASG MET A 123 89 H AlphaHelix -65.44 -40.89 38.1 2LH8 ASG CYS A 124 90 H AlphaHelix -59.23 -47.85 0.0 2LH8 ASG THR A 125 91 H AlphaHelix -66.34 -36.95 32.1 2LH8 ASG THR A 126 92 H AlphaHelix -71.89 -37.55 45.9 2LH8 ASG GLN A 127 93 H AlphaHelix -66.46 -40.26 37.5 2LH8 ASG TYR A 128 94 H AlphaHelix -54.87 -45.09 15.6 2LH8 ASG GLN A 129 95 H AlphaHelix -57.94 -48.86 138.4 2LH8 ASG LYS A 130 96 H AlphaHelix -69.22 -47.52 139.0 2LH8 ASG GLU A 131 97 H AlphaHelix -66.49 -36.32 51.7 2LH8 ASG SER A 132 98 H AlphaHelix -70.86 -35.19 42.6 2LH8 ASG GLN A 133 99 H AlphaHelix -63.99 -46.02 130.6 2LH8 ASG ALA A 134 100 H AlphaHelix -64.39 -38.69 42.3 2LH8 ASG TYR A 135 101 H AlphaHelix -63.84 -27.02 140.8 2LH8 ASG TYR A 136 102 H AlphaHelix -80.15 -32.98 211.8 2LH8 ASG ASP A 137 103 H AlphaHelix -76.78 -41.64 136.6 2LH8 ASG GLY A 138 104 C Coil 143.99 360.00 127.3 2LH8